BAC Information

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BAC

Clone NameB6Ng01-075L17
ChromosomeY (Build37)3 (Build37)
Map Location 385,597 - 385,76341,059,468 - 41,059,732
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y
Downstream geneTspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075L17.bB6Ng01-075L17.g
ACCDH892208DH892209
length732266
definitionDH892208|Mus musculus domesticus DNA, BAC clone: B6Ng01-075L17, 5' end.DH892209|Mus musculus domesticus DNA, BAC clone: B6Ng01-075L17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(385,597 - 385,763)(41,059,468 - 41,059,732)
sequence
gaattccattgaatctgtagattgcttttggcaagatatccatcttctga
gatcttctttgatttcttcagagacttgaagttctttttttttttctttc
tttctttagccctggctgtcctgtaactcactctgtagaccagactggcc
ttgaactcagaaatctgcctgcctctgcctcccgagtactgggattaaag
gcgtgtgccaccacgcccggctgagacttgaaggtcttatcctacagatc
tttcacttccttagagtcacaccaaggtattttatattatttgtgactat
tgtgaagggtgttgtttacctaatttctttctttgtgtagagaaaggcca
ctgattagtttgagttaattttatatccagctacttcactgaagctgttt
atcaggtttaggagttctctggttgaatttttcaggtcacttatatatac
tatcatatcatctgcaaatagtgatattttgacttctttctttccaattt
gtatccccttgacttccttttgttgtcaaactgctctggctaggacttca
agtactatattgaataggtagggagaaagtggtcagccttgtctagtctc
tgattttagtgggattgctttccagcttcttaccattttactttgatgtt
ggctactggtttgctgtagattgcttttatatgtttaggtatgctggtga
ggatgtggagaaagaggaacactccaccattg
tttgtttagctctgagccccattttttaatggggttatttgattttctgg
agtccaccttcttgagttctttatatatattggatattagtcccctatct
gatttaggataggtaaagatcctttcccaatctgttggtggcctttttgt
cttattgacggtgtcttttgccttacagaagctttgcagtttcatgaggt
cccatttgtcaattcttgatcttacagcacaagccattgctgttctattc
aggaattttccccctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_385597_385763
seq2: B6Ng01-075L17.b_128_267

seq1  TTCTTTTTTTTTTTTTTTTTTTTGGTTTTTTGAGACAGGTTTTCTCTATA  50
      |||||||||||||| ||                           ||| | 
seq2  TTCTTTTTTTTTTTCTT---------------------------TCTTTC  23

seq1  TATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGA  100
      | ||||||||||||||||| ||||||||||||||||||| ||||||| ||
seq2  TTTAGCCCTGGCTGTCCTGTAACTCACTCTGTAGACCAGACTGGCCTTGA  73

seq1  ACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCTT  150
      ||||||||||||||||||||||||||||||||| |||||||||||||| |
seq2  ACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTACTGGGATTAAAGGCGT  123

seq1  GCGCCACCACACCCGGC  167
      | |||||||| ||||||
seq2  GTGCCACCACGCCCGGC  140

seq1: chr3_41059468_41059732
seq2: B6Ng01-075L17.g_76_341 (reverse)

seq1  CAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTG  50
      |||||| |||||||||| ||||||||||||||||||||||||||||||  
seq2  CAGGGGGAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCA  50

seq1  AGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAA  100
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGAATTGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGTAAGGCAAA  100

seq1  AGACACCGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCT  149
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGACACCGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCT  150

seq1  TTACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAA  199
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAA  200

seq1  CTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGG  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAAAATGGGG  250

seq1  CTCAGAGCTAAACAAA  265
      ||||||||||||||||
seq2  CTCAGAGCTAAACAAA  266