BAC Information

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BAC

Clone NameB6Ng01-076B12
Chromosome3 (Build37)
Map Location 126,027,626 - 126,156,974
singlet/doubletdoublet
Overlap geneArsj
Upstream geneNdst4, Ugt8a
Downstream geneCamk2d, Ank2, LOC100043749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076B12.bB6Ng01-076B12.g
ACCDH892460DH892461
length1,122947
definitionDH892460|Mus musculus domesticus DNA, BAC clone: B6Ng01-076B12, 5' end.DH892461|Mus musculus domesticus DNA, BAC clone: B6Ng01-076B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,027,626 - 126,028,746)(126,156,033 - 126,156,974)
sequence
gaattctcctaagaatcagagaaactagagtacctttccgaaataaagtt
tcctctggaaggttcttatcaaaggtgtaacacaggcatgttctttctgc
agtgtgcacctcgacactcttgatttccagcagggagcctggtcatttca
gccaggcaaaacatccatcaccacacaaatcaccacctgttgttggtcca
gcaaaagctctgcagttttcaatttccactcttttgccgtctgttcacag
gcatccgaagctttgctcctaggggaactgagcacaggttgatcacaaga
actcttccatctggatttggacttcagtgttttcctttgcatctaggaaa
tggctaaaagggcatcactaagtacagagaacaaaacgagcacagtgctc
ataagaggagaggattgtggtttccatggcagcagcttgacagctacaaa
tgtttttaaagctattttcccctctaacataaaccagatatttggatata
tcaaatagctattgaatttaagtttaaaaggcctgccatctccactgtgg
gaaagtctttgttttattacactgggctcttttcaggagttccagcactg
tctctagtccggagtgacctctgtccaggctgcaacacatgattttatta
gaccacactgatgtctttattcctggttctcttctttccttctttcattt
ttctttcttctgtaaacagttaagtggctgaaaaaatcatgcattcatga
gtcctgcttaggcagaaacctaaggattattttcctcctatttagaaata
ttttagttacaacaaaaaattgttattatatatatataaatggtatattg
aacgctatggctaaaatgggatacctcattctctataattttcatttgtg
tttgattattcatgataagaaccttttgtacaatgctccaatatttgagc
tgtgtgagtctgtgctcattttgtcacatctttttcaaatgtaaaaactg
gggagtggctttatgtccttttaaaatcatataataggattttttgttat
ctctcttactaaagtcacagaatgcttatcttacaggtatatttcttaaa
gttttcccaatgggtggacatt
gaattcaaaatttgaaggacaaaccaaaattcttcaaagaaatattaaag
aaaaatagcagccaaatcaccagtaaactttcaaaactaaaaggacgttg
agcaatagtcaaaattccacatgccaagttgtctcactctgctttggttt
agatagtgaaattcaggtttcagaaagctaaaatctgtaaggaaacagta
tatcccacatgttttggtgtaagattaacgataagagtgctgggacactc
tccagtgtgagtgcgttagtgtttgatgaatatgtacaatttccaaatca
gcaaatgagatctacaggctgccaactaactgctcacagtgagataaatg
tcaaagagatgcacgctgtaaagggcaaatcaattatggagccgattaat
ttaataacatgctgcaaggaactcagagttttttcacgttaataaaaagc
aagatatacttgtgaactgtaaagagaatcgaagagcttacggtggagaa
gtggtcacaatgtgctttgagggaagggcaggttcgtggtattttaatta
aaagtttacttcttagtttaaatttggagaagttaggtaactcataaaat
gccgactctttcttcagattaatcagtttacttaagtcaaggataattca
aaccacatggcataaaaagtctttcagaatgtaatgcaaattaggcaaat
gcatcaatgcctgaaaatttagcagacttataatttaaatgtctctgttt
ttaaaagggttaatacagtgatattgttatgttcacaagcccttaaatta
tggatttgttaattagtatttattatgcatttgtggggcatgcctgatgt
gtatgtcccaggagtatatgtgttgtgtcaggagtggtgtgtgtgccagg
agtatatgtgtgccaggagtaatatgttgatgtgtctggagaatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_126027626_126028746
seq2: B6Ng01-076B12.b_47_1168

seq1  GAATTCTCCTAAGAATCAGAGAAACTAGAGTACCTTTCCGAAATAAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTAAGAATCAGAGAAACTAGAGTACCTTTCCGAAATAAAGTT  50

seq1  TCCTCTGGAAGGTTCTTATCAAAGGTGTAACACAGGCATGTTCTTTCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGAAGGTTCTTATCAAAGGTGTAACACAGGCATGTTCTTTCTGC  100

seq1  AGTGTGCACCTCGACACTCTTGATTTCCAGCAGGGAGCCTGGTCATTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCACCTCGACACTCTTGATTTCCAGCAGGGAGCCTGGTCATTTCA  150

seq1  GCCAGGCAAAACATCCATCACCACACAAATCACCACCTGTTGTTGGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCAAAACATCCATCACCACACAAATCACCACCTGTTGTTGGTCCA  200

seq1  GCAAAAGCTCTGCAGTTTTCAATTTCCACTCTTTTGCCGTCTGTTCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGCTCTGCAGTTTTCAATTTCCACTCTTTTGCCGTCTGTTCACAG  250

seq1  GCATCCGAAGCTTTGCTCCTAGGGGAACTGAGCACAGGTTGATCACAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCGAAGCTTTGCTCCTAGGGGAACTGAGCACAGGTTGATCACAAGA  300

seq1  ACTCTTCCATCTGGATTTGGACTTCAGTGTTTTCCTTTGCATCTAGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCCATCTGGATTTGGACTTCAGTGTTTTCCTTTGCATCTAGGAAA  350

seq1  TGGCTAAAAGGGCATCACTAAGTACAGAGAACAAAACGAGCACAGTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAAAAGGGCATCACTAAGTACAGAGAACAAAACGAGCACAGTGCTC  400

seq1  ATAAGAGGAGAGGATTGTGGTTTCCATGGCAGCAGCTTGACAGCTACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGGAGAGGATTGTGGTTTCCATGGCAGCAGCTTGACAGCTACAAA  450

seq1  TGTTTTTAAAGCTATTTTCCCCTCTAACATAAACCAGATATTTGGATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAAAGCTATTTTCCCCTCTAACATAAACCAGATATTTGGATATA  500

seq1  TCAAATAGCTATTGAATTTAAGTTTAAAAGGCCTGCCATCTCCACTGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGCTATTGAATTTAAGTTTAAAAGGCCTGCCATCTCCACTGTGG  550

seq1  GAAAGTCTTTGTTTTATTACACTGGGCTCTTTTCAGGAGTTCCAGCACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCTTTGTTTTATTACACTGGGCTCTTTTCAGGAGTTCCAGCACTG  600

seq1  TCTCTAGTCCGGAGTGACCTCTGTCCAGGCTGCAACACATGATTTTATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGTCCGGAGTGACCTCTGTCCAGGCTGCAACACATGATTTTATTA  650

seq1  GACCACACTGATGTCTTTATTCCTGGTTCTCTTCTTTCCTTCTTTCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACACTGATGTCTTTATTCCTGGTTCTCTTCTTTCCTTCTTTCATTT  700

seq1  TTCTTTCTTCTGTAAACAGTTAAGTGGCTGAAAAAATCATGCATTCATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTCTGTAAACAGTTAAGTGGCTGAAAAAATCATGCATTCATGA  750

seq1  GTCCTGCTTAGGCAGAAACCTAAGGATTATTTTCCTCCTATTTAGAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCTTAGGCAGAAACCTAAGGATTATTTTCCTCCTATTTAGAAATA  800

seq1  -TTTAGTTACAACAAAAAATTGTTATTATATATATATAAATGGTATATTG  849
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTACAACAAAAAATTGTTATTATATATATATAAATGGTATATTG  850

seq1  AACGCTATGGCTAAAATGGTATACCTCATTCTCTATAATTTTCATTTGTG  899
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AACGCTATGGCTAAAATGGGATACCTCATTCTCTATAATTTTCATTTGTG  900

seq1  TTTGATTATTCATGATAAGAACCTTTTGTACAATGCTCCAATATTTGAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTATTCATGATAAGAACCTTTTGTACAATGCTCCAATATTTGAGC  950

seq1  TGTGTGAGTCTGTGCCTCATTTTGTCACATCTTTTTCAAATGTAAAAACT  999
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGTCTGTG-CTCATTTTGTCACATCTTTTTCAAATGTAAAAACT  999

seq1  GGGAAGTGGCTTTATTGTTCCTTTTAAAATCATATAATAGGATTTTTTGT  1049
      ||| |||||||||||   ||||||||||||||||||||||||||||||||
seq2  GGGGAGTGGCTTTAT--GTCCTTTTAAAATCATATAATAGGATTTTTTGT  1047

seq1  TAATCTCTCTTACTAAAGTACACAG-ATGC-TATC-TACA-GTATATTTC  1095
      | ||||||||||||||||| ||||| |||| |||| |||| |||||||||
seq2  T-ATCTCTCTTACTAAAGT-CACAGAATGCTTATCTTACAGGTATATTTC  1095

seq1  TTATAGTTTTCCAAATGGGT-GACATT  1121
      ||| |||||||| ||||||| ||||||
seq2  TTAAAGTTTTCCCAATGGGTGGACATT  1122

seq1: chr3_126156033_126156974
seq2: B6Ng01-076B12.g_69_1015 (reverse)

seq1  TATATACTCCAGACACATACACATA-TACTCCTGGCACACATATACTCCT  49
      ||||| ||||||||||||  ||||| ||||||||||||||||||||||||
seq2  TATATTCTCCAGACACATCAACATATTACTCCTGGCACACATATACTCCT  50

seq1  GGCACACACA-CACTCCTGACACAACACATATACTCCTGGGACATACACA  98
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGCACACACACCACTCCTGACACAACACATATACTCCTGGGACATACACA  100

seq1  TCAGGCATG-CCCACAAATGCATAAT-AATACTAATTAACAAATCCATAA  146
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  TCAGGCATGCCCCACAAATGCATAATAAATACTAATTAACAAATCCATAA  150

seq1  TTTAAGGGCTTGTGAACATAACAATATCACTGTATTAACCCTTTTAAAAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGGCTTGTGAACATAACAATATCACTGTATTAACCCTTTTAAAAA  200

seq1  CAGAGACATTTAAATTATAAGTCTGCT-AACTTTCAGGCATTGATGCATT  245
      ||||||||||||||||||||||||||| || |||||||||||||||||||
seq2  CAGAGACATTTAAATTATAAGTCTGCTAAATTTTCAGGCATTGATGCATT  250

seq1  TGCCTAATTTGCATTACATTCTGAAAGACTTTTTATGCCATGTGGTTTGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAATTTGCATTACATTCTGAAAGACTTTTTATGCCATGTGGTTTGA  300

seq1  ATTATCCTTGACTTAAGTAAACTGATTAATCTGAAGAAAGAGTCGGCATT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCTTGACTTAAGTAAACTGATTAATCTGAAGAAAGAGTCGGCATT  350

seq1  TTATGAGTTACCTAACTTCTCCAAATTTAAACTAAGAAGTAAACTTTTAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGTTACCTAACTTCTCCAAATTTAAACTAAGAAGTAAACTTTTAA  400

seq1  TTAAAATACCACGAACCTGCCCTTCCCTCAAAGCACATTGTGACCACTTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATACCACGAACCTGCCCTTCCCTCAAAGCACATTGTGACCACTTC  450

seq1  TCCACCGTAAGCTCTTCGATTCTCTTTACAGTTCACAAGTATATCTTGCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCGTAAGCTCTTCGATTCTCTTTACAGTTCACAAGTATATCTTGCT  500

seq1  TTTTATTAACGTGAAAAAACTCTGAGTTCCTTGCAGCATGTTATTAAATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTAACGTGAAAAAACTCTGAGTTCCTTGCAGCATGTTATTAAATT  550

seq1  AATCGGCTCCATAATTGATTTGCCCTTTACAGCGTGCATCTCTTTGACAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGGCTCCATAATTGATTTGCCCTTTACAGCGTGCATCTCTTTGACAT  600

seq1  TTATCTCACTGTGAGCAGTTAGTTGGCAGCCTGTAGATCTCATTTGCTGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCACTGTGAGCAGTTAGTTGGCAGCCTGTAGATCTCATTTGCTGA  650

seq1  TTTGGAAATTGTACATATTCATCAAACACTAACGCACTCACACTGGAGAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAATTGTACATATTCATCAAACACTAACGCACTCACACTGGAGAG  700

seq1  TGTCCCAGCACTCTTATCGTTAATCTTACACCAAAACATGTGGGATATAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAGCACTCTTATCGTTAATCTTACACCAAAACATGTGGGATATAC  750

seq1  TGTTTCCTTACAGATTTTAGCTTTCTGAAACCTGAATTTCACTATCTAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTTACAGATTTTAGCTTTCTGAAACCTGAATTTCACTATCTAAA  800

seq1  CCAAAGCAGAGTGAGACAACTTGGCATGTGGAATTTTGACTATTGCTCAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCAGAGTGAGACAACTTGGCATGTGGAATTTTGACTATTGCTCAA  850

seq1  CGTCCTTTTAGTTTTGAAAGTTTACTGGTGATTTGGCTGCTATTTTTCTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTTTTAGTTTTGAAAGTTTACTGGTGATTTGGCTGCTATTTTTCTT  900

seq1  TAATATTTCTTTGAAGAATTTTGGTTTGTCCTTCAAATTTTGAATTC  942
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTCTTTGAAGAATTTTGGTTTGTCCTTCAAATTTTGAATTC  947