BAC Information

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BAC

Clone NameB6Ng01-077L11
Chromosome3 (Build37)8 (Build37)
Map Location 41,059,187 - 41,059,7376,517,790 - 6,518,937
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077L11.bB6Ng01-077L11.g
ACCDH893618DH893619
length9771,140
definitionDH893618|Mus musculus domesticus DNA, BAC clone: B6Ng01-077L11, 5' end.DH893619|Mus musculus domesticus DNA, BAC clone: B6Ng01-077L11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,187 - 41,059,737)(6,517,790 - 6,518,937)
sequence
gaattctttgttcagctttgagtcccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattgtcccct
atctgatttaggataggtaaagaccctttcccaatctgttggtggtcttt
ttgtcttattgacggtgtcttttgccttgcagaagctttgcaactttatg
aggtcctatttatcgattcttgatcttacagcacaacccattgctgttct
attcaggaatttttcccctgtacccatatctttgagtcttttccctactt
tctcctctataagtttcattgtctctagttttatatggagttccttaatc
cacttagatttgaccttagtaaaaggagataggaatggattaattcacat
tcttctacatgatgactgccagttgtgccagcaccatttgttgaaaatgc
tgtcttttttccactggatggtttaactcccttgtcaaagatcaagtgac
cataggtgtgtgggttcatctatgactcttcaattctgttccattggtct
acttgtctgtcgctgtaccattaccatgcagtttttatcacaattgctct
gtagtacagctttaagtcaggcatggtgattccaccagaggttcttttat
ccttgagaagagtttttcctatctaaggtcttttgttattccagatgaat
ctgccgattgccctttctaatttgttgaagaattgaggtggaattttgat
ggggattgcattgaatctgtagattgcttttggcatgatagccattttta
ctatatagatcctgccaatctatgagcatgggagatctttccatcttctg
agatcttatttaatttctttcttagagacttgaaattcttttcatacaga
tctttcacttcctcagttagagtcagccaaggtattttatattattagtg
actattgagaagtgtgttgtttcccta
gaattcataaccacatgtataggagaggaaacagaaagccatcatgttca
tggtccagcccgagtgtctcctgggaggccctggacatagagaatacaag
gaccagactgctcagcacagcgctccattctcagtaaccaaccccatcaa
ctttctctacctacaatttgaagcaaataaattatcctctgactaggatc
atagttaaacgttcaattgaggccataatttaaaactcgatttataaatt
tgaaagtgtgtctggcaatttatttgtcatggttttggtctgtttgttgt
tttacagccagtcccactctttattacaggcaggcctcttaattgagcct
ctacattgccaaacttgtgacatcttacatgtactccctatcacacgtag
atccttttaatttttctaatttttaaaaacaaacaatcatagagctagaa
attcataaatgaaatattgtagaagacttatgagttttgatgaactttta
tgcacttttaatagacattgttttaaactatgggttttttttagagttac
cttttttgttgttgaaaaattaaaattgaaatctgtgtgctgtgtttgag
atgacacagtctcaggattttatccatctggtaatataatgctctataaa
tatttctacagaggaaagtgagaacgttgactataaatacagccaagatg
agaaaatttattgagtattttcagttttgcacactgcagttgcaatgcag
tctactttagctacacaatacaattttattgttggaagagaggagaaaaa
taacctattttttcctgaagaaaaggacagaagaaatcacataacaggaa
atttccccttataattagatggtaccgtttagttttgggaactagccaga
ccataagctcaagatttttaagcaatagaattattttatcttgtaactac
acaaaaaagttcattaaaactgaatgagttcatttaatcagaggacattt
ttctgaatacactgcagtctaccagaagttccccatgcacatgtacacct
gaatgtttaattcaatagtgaggagaaaatgaaagaactatatcacatat
attctggaaataaattcctccaataacatacctttatgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059187_41059737
seq2: B6Ng01-077L11.b_46_594 (reverse)

seq1  AGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATG  50
      |||||||||||| ||||||||||| ||| | | ||| |||||||||||||
seq2  AGACCAATGGAACAGAATTGAAGAGTCATAGATGAACCCACACACCTATG  50

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGAC  100
      ||||||||||||| |||||||||| | |||||||||||||||||||||||
seq2  GTCACTTGATCTTTGACAAGGGAG-TTAAACCATCCAGTGGAAAAAAGAC  99

seq1  AGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  150
      |||||||||||||||||||||||||||||||||  || ||||||||||||
seq2  AGCATTTTCAACAAATGGTGCTGGCACAACTGGCAGTCATCATGTAGAAG  149

seq1  AATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGT  200
      |||| ||||| ||||| |||||||||||| ||||||||||||||||||||
seq2  AATGTGAATTAATCCATTCCTATCTCCTTTTACTAAGGTCAAATCTAAGT  199

seq1  GGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  250
      |||| ||||||| ||| ||||||| ||||||| |||||||||||||||||
seq2  GGATTAAGGAACTCCATATAAAACTAGAGACAATGAAACTTATAGAGGAG  249

seq1  AAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCA  300
      ||||| |||||||| ||  |||||||||  |||||||||||||||||| |
seq2  AAAGTAGGGAAAAGACTCAAAGATATGGGTACAGGGGAAAAATTCCTGAA  299

seq1  TAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACC  350
      |||||||||||||| ||||||||||||||  ||||| || |||| |||||
seq2  TAGAACAGCAATGGGTTGTGCTGTAAGATCAAGAATCGATAAATAGGACC  349

seq1  TCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  400
      |||| ||  |||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGTTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  399

seq1  AAAAG-GCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  449
      |||||  |||||||||||||||||||| ||||||||||||||||||||||
seq2  AAAAGACCACCAACAGATTGGGAAAGGGTCTTTACCTATCCTAAATCAGA  449

seq1  TAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCA  499
      |||||||| |||||||||||||||| ||||||||||||||||||| ||||
seq2  TAGGGGAC-AATATCCAATATATATAAAGAACTCAAGAAGGTGGACTCCA  498

seq1  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAA  549
      |||||||||||||||||||| ||||||||| |||| |||| |||||||||
seq2  GAAAATCAAATAACCCCATT-AAAAATGGGACTCAAAGCTGAACAAAGAA  547

seq1  TT  551
      ||
seq2  TT  549

seq1: chr8_6517790_6518937
seq2: B6Ng01-077L11.g_69_1208

seq1  GAATTCATAACCACATGTATAGGAGAGGAAACAGAAAGCCATCATGTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAACCACATGTATAGGAGAGGAAACAGAAAGCCATCATGTTCA  50

seq1  TGGTCCAGCCCGAGTGTCTCCTGGGAGGCCCTGGACATAGAGAATACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCAGCCCGAGTGTCTCCTGGGAGGCCCTGGACATAGAGAATACAAG  100

seq1  GACCAGACTGCTCAGCACAGCGCTCCATTCTCAGTAACCAACCCCATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGACTGCTCAGCACAGCGCTCCATTCTCAGTAACCAACCCCATCAA  150

seq1  CTTTCTCTACCTACAATTTGAAGCAAATAAATTATCCTCTGACTAGGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTACCTACAATTTGAAGCAAATAAATTATCCTCTGACTAGGATC  200

seq1  ATAGTTAAACGTTCAATTGAGGCCATAATTTAAAACTCGATTTATAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAAACGTTCAATTGAGGCCATAATTTAAAACTCGATTTATAAATT  250

seq1  TGAAAGTGTGTCTGGCAATTTATTTGTCATGGTTTTGGTCTGTTTGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTGTGTCTGGCAATTTATTTGTCATGGTTTTGGTCTGTTTGTTGT  300

seq1  TTTACAGCCAGTCCCACTCTTTATTACAGGCAGGCCTCTTAATTGAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGCCAGTCCCACTCTTTATTACAGGCAGGCCTCTTAATTGAGCCT  350

seq1  CTACATTGCCAAACTTGTGACATCTTACATGTACTCCCTATCACACGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTGCCAAACTTGTGACATCTTACATGTACTCCCTATCACACGTAG  400

seq1  ATCCTTTTAATTTTTCTAATTTTTAAAAACAAACAATCATAGAGCTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTTAATTTTTCTAATTTTTAAAAACAAACAATCATAGAGCTAGAA  450

seq1  ATTCATAAATGAAATATTGTAGAAGACTTATGAGTTTTGATGAACTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAAATGAAATATTGTAGAAGACTTATGAGTTTTGATGAACTTTTA  500

seq1  TGCACTTTTAATAGACATTGTTTTAAACTATGGGTTTTTTTTAGAGTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTTTAATAGACATTGTTTTAAACTATGGGTTTTTTTTAGAGTTAC  550

seq1  CTTTTTTGTTGTTGAAAAATTAAAATTGAAATCTGTGTGCTGTGTTTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTGTTGTTGAAAAATTAAAATTGAAATCTGTGTGCTGTGTTTGAG  600

seq1  ATGACACAGTCTCAGGATTTTATCCATCTGGTAATATAATGCTCTATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACAGTCTCAGGATTTTATCCATCTGGTAATATAATGCTCTATAAA  650

seq1  TATTTCTACAGAGGAAAGTGAGAACGTTGACTATAAATACAGCCAAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTACAGAGGAAAGTGAGAACGTTGACTATAAATACAGCCAAGATG  700

seq1  AGAAAATTTATTGAGTATTTTCAGTTTTGCACACTGCAGTTGCAATGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTTATTGAGTATTTTCAGTTTTGCACACTGCAGTTGCAATGCAG  750

seq1  TCTACTTTAGCTACACAATACAATTTTATTGTTGGAAGAGAGGAGAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTTAGCTACACAATACAATTTTATTGTTGGAAGAGAGGAGAAAAA  800

seq1  TAACCTATTTTTTCCTGAAGAAAAGGACAGAAGAAATCACATAACAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTATTTTTTCCTGAAGAAAAGGACAGAAGAAATCACATAACAGGAA  850

seq1  ATTTCCCCTTATAATTAGATGGTACCGTTTAGTTTTGGGAACTAGCCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCCTTATAATTAGATGGTACCGTTTAGTTTTGGGAACTAGCCAGA  900

seq1  CCATAAGCTCAAGATTTTTAAGCAATAGAATTATTTTATCTTGTAACTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGCTCAAGATTTTTAAGCAATAGAATTATTTTATCTTGTAACTAC  950

seq1  ACAAAAAAGTTTCAATTAAAACTGAATTGAGTTCATTTAATCTAGAGGAC  1000
      |||||||||||   |||||||||||| ||||||||||||||| |||||||
seq2  ACAAAAAAGTT--CATTAAAACTGAA-TGAGTTCATTTAATC-AGAGGAC  996

seq1  A-TTTTCTGAATACACTGCAGTCTACCAGAAGTTCCCACATGCACAATGT  1049
      | ||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  ATTTTTCTGAATACACTGCAGTCTACCAGAAGTTCCC-CATGCAC-ATGT  1044

seq1  AACACCTGAATGTTTAAATCCAATAGTGAGGAGAAAATGAAGAAACTATA  1099
       |||||||||||||| ||| |||||||||||||||||||||  |||||||
seq2  -ACACCTGAATGTTT-AATTCAATAGTGAGGAGAAAATGAAAGAACTATA  1092

seq1  TCACATATATTCTGAAATATACATTCTTCAAATAACATACATTTATGTT  1148
      |||||||||||||| || ||| |||| || |||||||||| ||||||||
seq2  TCACATATATTCTGGAA-ATAAATTCCTCCAATAACATACCTTTATGTT  1140