BAC Information

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BAC

Clone NameB6Ng01-077N01
Chromosome3 (Build37)
Map Location 65,689,875 - 65,870,254
singlet/doubletdoublet
Overlap geneCcnl1, LOC625048, Veph1
Upstream geneLOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866
Downstream geneTpi-rs2, Ptx3, LOC625115, Shox2, Rsrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077N01.bB6Ng01-077N01.g
ACCDH893692DH893693
length1,108671
definitionDH893692|Mus musculus domesticus DNA, BAC clone: B6Ng01-077N01, 5' end.DH893693|Mus musculus domesticus DNA, BAC clone: B6Ng01-077N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,689,875 - 65,691,004)(65,869,584 - 65,870,254)
sequence
gaattcaaactgcacacttcatggtggtaatacatgtgctgaaaaatcca
cagtccctaattcaaatcccaggggtgagttaggcatggcagaattgggg
gaatctgataaaaagtcaaagaatgtgcatacctctggctacatgacacc
ctatagcatctgcagccacatcctgtgttcatttctctaaatgtctctgt
tgcagaaatagaatgtagggagcctatgtcaattcaagaatgacctttgt
atcaagtgtgctcatttcaggacatattttgcttccacataagttataag
tgcattttttttctttttggtactcagatctcttggggttttgaaactgt
aaagttgcttcctcttcatcatagagatgaacagcctgggagggaggttt
gccacattggttaatctataggagagatgaggctgagctcctaaccccca
gtgaggctccggaatccatggacacatggagtggtggctagtcttggttg
tcaatgtgactatatctgaattgagctacaatccagaaatggagggcatg
cccgtaaaaatttgtctgctttgtttgaagtgggtgaatctatttctaat
ctggacctttgaggcaggaagccacacctttgatctggatcctgaacctg
gaagacaccagtcttttacttggatcttgagatgggaagacataccttta
acatggcccataccttctgctggaagtctacccaagaacatagaaaaagg
agctcttgctttttaacattcttttttttttaaaaaaagatttatttagc
cgggtgtggtggcgcacgcctttaatcccagcactcaggaggcagaggca
ggcgaatttctgagttcgaggccagcctggtctacaaagtgagttccagg
acagccaggctccacagagaaaccctgtctcgaaaaccaaaaaaaaaaaa
gatttatttattttatgtatatggtacactgtagtgtacaaatggtgtga
gcttcatgtggtgtgagaaattgaactttagactcttactcgctccagtc
agtcccctcgctccaccgagattatttattatataaaataacacaactgt
agctttct
gaattcatgatggcctcagacaggtgttgttcatgtacagtgaggtatgc
ttgtttatatacaatgagatattgttctctatatgcagtgagatacggtt
ctttataggtggtgaggtatggctgtctataatggtgggatatggctatt
tttatgtagcgaggtatggttgtctataacagtgggatttggttgctttt
atgcagtgagtatggttgtctatatgcagtgaggtatttcaagatgggaa
aagcacacaaaacaaggagctcattagcctgaatggaagccagtgtgccc
gaggattagcagctacgcagacattactgtctactcagtgtttaagtcaa
ggttgaggtagaaagaagtgcaaccacagatgtcgtgggagatgatgcta
aggcagtcaagtcaccagtgacaacctctgtgaataaatcaatcagctat
tcaaaaaagttcgccgggtgtggtggcgcacgcctttaatcccagcactc
aggaggcagagacaggaggatttctgagttcgaggccagcctggtctaca
aagtgagttccaggacagccagggctacacagagaaaccctgtctcgaaa
aaccaaaaaaaaaaaaaagttcgctccttccttgtcagactgactttctc
acgggggagagaggggcgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_65689875_65691004
seq2: B6Ng01-077N01.b_46_1153

seq1  GAATTCAAACTGCACACTTCATGGTGGTAATACATGTGCTGAAAAATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTGCACACTTCATGGTGGTAATACATGTGCTGAAAAATCCA  50

seq1  CAGTCCCTAATTCAAATCCCAGGGGTGAGTTAGGCATGGCAGAATTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCTAATTCAAATCCCAGGGGTGAGTTAGGCATGGCAGAATTGGGG  100

seq1  GAATCTGATAAAAAGTCAAAGAATGTGCATACCTCTGGCTACATGACACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGATAAAAAGTCAAAGAATGTGCATACCTCTGGCTACATGACACC  150

seq1  CTATAGCATCTGCAGCCACATCCTGTGTTCATTTCTCTAAATGTCTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCATCTGCAGCCACATCCTGTGTTCATTTCTCTAAATGTCTCTGT  200

seq1  TGCAGAAATAGAATGTAGGGAGCCTATGTCAATTCAAGAATGACCTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAATAGAATGTAGGGAGCCTATGTCAATTCAAGAATGACCTTTGT  250

seq1  ATCAAGTGTGCTCATTTCAGGACATATTTTGCTTCCACATAAGTTATAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTGTGCTCATTTCAGGACATATTTTGCTTCCACATAAGTTATAAG  300

seq1  TGCATTTTTTTTCTTTTTGGTACTCAGATCTCTTGGGGTTTTGAAACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTTTTTCTTTTTGGTACTCAGATCTCTTGGGGTTTTGAAACTGT  350

seq1  AAAGTTGCTTCCTCTTCATCATAGAGATGAACAGCCTGGGAGGGAGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGCTTCCTCTTCATCATAGAGATGAACAGCCTGGGAGGGAGGTTT  400

seq1  GCCACATTGGTTAATCTATAGGAGAGATGAGGCTGAGCTCCTAACCCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATTGGTTAATCTATAGGAGAGATGAGGCTGAGCTCCTAACCCCCA  450

seq1  GTGAGGCTCCGGAATCCATGGACACATGGAGTGGTGGCTAGTCTTGGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCTCCGGAATCCATGGACACATGGAGTGGTGGCTAGTCTTGGTTG  500

seq1  TCAATGTGACTATATCTGAATTGAGCTACAATCCAGAAATGGAGGGCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTGACTATATCTGAATTGAGCTACAATCCAGAAATGGAGGGCATG  550

seq1  CCCGTAAAAATTTGTCTGCTTTGTTTGAAGTGGGTGAATCTATTTCTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTAAAAATTTGTCTGCTTTGTTTGAAGTGGGTGAATCTATTTCTAAT  600

seq1  CTGGACCTTTGAGGCAGGAAGCCACACCTTTGATCTGGATCCTGAACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCTTTGAGGCAGGAAGCCACACCTTTGATCTGGATCCTGAACCTG  650

seq1  GAAGACACCAGTCTTTTACTTGGATCTTGAGATGGGAAGACATACCTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACACCAGTCTTTTACTTGGATCTTGAGATGGGAAGACATACCTTTA  700

seq1  ACATGGCCCATACCTTCTGCTGGAAGTCTACCCAAGAACATAGAAAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCCCATACCTTCTGCTGGAAGTCTACCCAAGAACATAGAAAAAGG  750

seq1  AGCTCTTGCTTTTTAACATTCTTTTTTTTTTAAAAAAAGATTTATTTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTGCTTTTTAACATTCTTTTTTTTTTAAAAAAAGATTTATTTAGC  800

seq1  CGGGTGTGGTGGCGCACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGTGGTGGCGCACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCA  850

seq1  GGCGAATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGG  900

seq1  ACAGCCAGGGCTCCACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAA  950
      ||||||| ||||||||||||||||||||||||||||| |           
seq2  ACAGCCA-GGCTCCACAGAGAAACCCTGTCTCGAAAACC-----------  938

seq1  AAAAAAAAAAAAGATTTATTTATTTTATGTATATGGGTACACTGTAGTGT  1000
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAAAAAAAAAAAGATTTATTTATTTTATGTATAT-GGTACACTGTAGTGT  987

seq1  ACAAATGGTTGTGAGCCTTCATGTGGTTGTTGAG-AATTGAACTTTAGGA  1049
      |||||||| |||||| |||||||||||   |||| |||||||||||| ||
seq2  ACAAATGG-TGTGAG-CTTCATGTGGT--GTGAGAAATTGAACTTTA-GA  1032

seq1  CCTCTACTCGCTCCAGTCAGTCCCACTCGCTCCAACCCAAAGATTTATTT  1099
      |   |||||||||||||||||||| |||||||||   |  ||| ||||||
seq2  CTCTTACTCGCTCCAGTCAGTCCC-CTCGCTCCA---CCGAGA-TTATTT  1077

seq1  ATTATTATAAATAAACAC-ACTGTAGCTTTCT  1130
      |||| ||||||  ||||| |||||||||||||
seq2  ATTA-TATAAAATAACACAACTGTAGCTTTCT  1108

seq1: chr3_65869584_65870254
seq2: B6Ng01-077N01.g_66_736 (reverse)

seq1  CCCCGCCCCTCTCTCCCCCGTGAGAAAGTCAGTCTGACAAGGAAGGAGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCCCCTCTCTCCCCCGTGAGAAAGTCAGTCTGACAAGGAAGGAGCG  50

seq1  AACTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCC  100

seq1  TGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAA  150

seq1  ATCCTCCTGTCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCGCCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCTGTCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCGCCACC  200

seq1  ACACCCGGCGAACTTTTTTGAATAGCTGATTGATTTATTCACAGAGGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCGGCGAACTTTTTTGAATAGCTGATTGATTTATTCACAGAGGTTG  250

seq1  TCACTGGTGACTTGACTGCCTTAGCATCATCTCCCACGACATCTGTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGTGACTTGACTGCCTTAGCATCATCTCCCACGACATCTGTGGTT  300

seq1  GCACTTCTTTCTACCTCAACCTTGACTTAAACACTGAGTAGACAGTAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCTTTCTACCTCAACCTTGACTTAAACACTGAGTAGACAGTAATG  350

seq1  TCTGCGTAGCTGCTAATCCTCGGGCACACTGGCTTCCATTCAGGCTAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGTAGCTGCTAATCCTCGGGCACACTGGCTTCCATTCAGGCTAATG  400

seq1  AGCTCCTTGTTTTGTGTGCTTTTCCCATCTTGAAATACCTCACTGCATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTTGTTTTGTGTGCTTTTCCCATCTTGAAATACCTCACTGCATAT  450

seq1  AGACAACCATACTCACTGCATAAAAGCAACCAAATCCCACTGTTATAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACCATACTCACTGCATAAAAGCAACCAAATCCCACTGTTATAGAC  500

seq1  AACCATACCTCGCTACATAAAAATAGCCATATCCCACCATTATAGACAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATACCTCGCTACATAAAAATAGCCATATCCCACCATTATAGACAGC  550

seq1  CATACCTCACCACCTATAAAGAACCGTATCTCACTGCATATAGAGAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTCACCACCTATAAAGAACCGTATCTCACTGCATATAGAGAACAA  600

seq1  TATCTCATTGTATATAAACAAGCATACCTCACTGTACATGAACAACACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCATTGTATATAAACAAGCATACCTCACTGTACATGAACAACACCT  650

seq1  GTCTGAGGCCATCATGAATTC  671
      |||||||||||||||||||||
seq2  GTCTGAGGCCATCATGAATTC  671