BAC Information

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BAC

Clone NameB6Ng01-078I22
Chromosome5 (Build37)3 (Build37)
Map Location 19,662,014 - 19,663,15041,059,166 - 41,059,737
singlet/doubletsingletsinglet
Overlap geneMagi2
Upstream gene4921504A21Rik
Downstream geneLOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078I22.bB6Ng01-078I22.g
ACCDH894221DH894222
length1,153978
definitionDH894221|Mus musculus domesticus DNA, BAC clone: B6Ng01-078I22, 5' end.DH894222|Mus musculus domesticus DNA, BAC clone: B6Ng01-078I22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,662,014 - 19,663,150)(41,059,166 - 41,059,737)
sequence
gaattcctcaggctggttaatgttttgcttctgtgggagctcagcatcct
attacactctcatttgaatactcctggctaagctgggagttcgtagactg
cccaatggtggatcatctgttaagtgactaacaaacctattccttttctg
gaaagcatctaatcatgaaaaaccaattccttttgttgacaaaaatcttt
attccttgttattccccatcatgtgtactggtaccatactgattttgtct
tctagaacaaaatggctgctctatgtgatggatgtgcatcaagactgtgg
tcatgtcttcttgtctaaagatagtcctgaagaacactgggtgctgtatg
agcaacactgtctttccagcatggaaaaatggggctgttgttattttctt
ctttgatcttatatcactaattactaagttacattcgaatgtctttcttt
tattagacaaaaacaaagaaaatctctcccgatgaactcgtaagaagaaa
ctgctaagaaacatcagatagatttcaaaaatatattttgtttgtttgtt
gtgctttttaattactaaatgattttttaaaaaaatctcaaccaagtcaa
gataacaacttctttacatactgtttgtaggtagactgctctaatgttga
gcacattttattagaatcatgtcctatcaaagtgggtagtgtctttaagg
ggctcagtttttgatagacactatcagtcagcaaaaccccatcagctctg
agacaggaaatgaagctggaggagagctgcctcggggatctgtgtccagt
gcttgctgctgatcttgtggaacacagctttcatagaatgcccattccag
acaagcccagtctgtgactccacagggattaagataaaataaagagctcc
caattgtttgcatcttacaactccagaatgtacctttgcttcattccctc
tgctgcctagtgggaaatttactgcattcttctctccattttcaaaatcc
tctcttgcctacttaatgaaatccagtccagggaaatggtcttacttcct
tgagcctttaccaaatttaactaggtgcaactctaaccaatgactttttc
tttccacatggaacaacatgcttcaaatgcattacagttcctccaaccga
cag
gaattctttgtttagctctgagccccattttttaatggggtcatttgatt
ttctggaatccaccttcttgagttctttatatatattggatgttagtccc
ctatctgatttaggataggcaaaggtcctttcccaatttgttggtggcct
ttttgtcttattgacagtgacttttgccttgcagaagctttgcaatttta
tgaggtcccattagtcgattctcgatcttacagcacaagccattgctgtt
ctattcaggaaaatttcccctgtccccatatcttcgaggcttttccctac
tttctcctctataagtttcagtgtctctggatttatgtggagttccttag
tccacttaaattgaccttagtacaatgagataggaatggatcaaccgcat
ttttctacatgataaccaccagttgtgccagcaccatttgttgaaaatgc
tgtctttattcccctggatggttttagctcccttttcaaagaacaagtgc
ccataggtgtgtgggttcatttctgggtcttcaattctattccattgctc
tacttgtctgttcctataccagtaccatgcagtttttatcacaattgctc
tgtagtacagctttaggtcagtcatggtgattccaccagaggtttctttt
atccttgagaagagtttttgctatcctagattttttgttatttcagatga
atttgcagattgccctttctaattcattgaagaattgagttgggattttg
atggggattgcattgaatctgtagattgctttggcaagatagccattttt
actatattgatcctgccaatccatgagcatgggagatctttccatcttct
gagatcttcttaatttctttcttcagagacttgaagttcttatcatccag
atcttcacttccttagttagagtcacgccaaggtatttatattattgtga
ctatgagaacggtgttgttccctaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_19662014_19663150
seq2: B6Ng01-078I22.b_41_1193 (reverse)

seq1  CTGTC-GCTGGAGGAACTGAAATGCA-TTGAAGCATTGTGTGCCATGTGG  48
      ||||| | ||||||||||| |||||| |||||||||  ||| ||||||||
seq2  CTGTCGGTTGGAGGAACTGTAATGCATTTGAAGCATGTTGTTCCATGTGG  50

seq1  AAAGGACAAGTCATGGGTTAGAGTTGCA-CTAGGTAAATTTGGTAAAGGC  97
      |||| | ||||||| ||||||||||||| |||| ||||||||||||||||
seq2  AAAGAAAAAGTCATTGGTTAGAGTTGCACCTAGTTAAATTTGGTAAAGGC  100

seq1  TCAAGGAAGTGAGACCATTTCCCTGGACTGGATTTCA-TGAGTAGGC-AG  145
      |||||||||| |||||||||||||||||||||||||| | ||||||| ||
seq2  TCAAGGAAGTAAGACCATTTCCCTGGACTGGATTTCATTAAGTAGGCAAG  150

seq1  AGAGGATTTTGAAGATGGAGAG-AGAATGCAGTAAA-TTCCCACTAGGCA  193
      ||||||||||||| |||||||| ||||||||||||| |||||||||||||
seq2  AGAGGATTTTGAAAATGGAGAGAAGAATGCAGTAAATTTCCCACTAGGCA  200

seq1  GCAGAGGGAATGAAGC-AAGGTACATTCTGGAGTTGTAAGATGC-AACAA  241
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  GCAGAGGGAATGAAGCAAAGGTACATTCTGGAGTTGTAAGATGCAAACAA  250

seq1  -TGGGAGCTC-TTATTTTATCTTAAT-CCTGTGGAGTCACAGACTGGGCT  288
       ||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  TTGGGAGCTCTTTATTTTATCTTAATCCCTGTGGAGTCACAGACTGGGCT  300

seq1  TGTCTGGAATGGGCATTCTATG-AAGCTGTGTTCCAC-AGATCAGCAGC-  335
      |||||||||||||||||||||| |||||||||||||| ||||||||||| 
seq2  TGTCTGGAATGGGCATTCTATGAAAGCTGTGTTCCACAAGATCAGCAGCA  350

seq1  AGCACTGGACACAGATCCCCGAGGCAGCTCTCCTCCAGCTTCATTTCCTG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGACACAGATCCCCGAGGCAGCTCTCCTCCAGCTTCATTTCCTG  400

seq1  TCTCAGAGCTGATGGGGTTTTGCTGACTGATAGTGTCTATC-AAAACTGA  434
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTCAGAGCTGATGGGGTTTTGCTGACTGATAGTGTCTATCAAAAACTGA  450

seq1  GCCCCTTAAAGACACTACCCACTTTGATAGGACATGATTCTAATAAAATG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTAAAGACACTACCCACTTTGATAGGACATGATTCTAATAAAATG  500

seq1  TGCTCAACATTAGAGCAGTCTACCTACAAACAGTATGTAAAGAAGTTGTT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAACATTAGAGCAGTCTACCTACAAACAGTATGTAAAGAAGTTGTT  550

seq1  ATCTTGACTTGGTTGAGATTTTTTTAAAAAATCATTTAGTAATTAAAAAG  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGACTTGGTTGAGATTTTTTTAAAAAATCATTTAGTAATTAAAAAG  600

seq1  CACAACAAACAAACAAAATATATTTTTGAAATCTATCTGATGTTTCTTAG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAAACAAACAAAATATATTTTTGAAATCTATCTGATGTTTCTTAG  650

seq1  CAGTTTCTTCTTACGAGTTCATCGGGAGAGATTTTCTTTGTTTTTGTCTA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTTCTTACGAGTTCATCGGGAGAGATTTTCTTTGTTTTTGTCTA  700

seq1  ATAAAAGAAAGACATTCGAATGTAACTTAGTAATTAGTGATATAAGATCA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAAAGACATTCGAATGTAACTTAGTAATTAGTGATATAAGATCA  750

seq1  AAGAAGAAAATAACAACAGCCCCATTTTTCCATGCTGGAAAGACAGTGTT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAAATAACAACAGCCCCATTTTTCCATGCTGGAAAGACAGTGTT  800

seq1  GCTCATACAGCACCCAGTGTTCTTCAGGACTATCTTTAGACAAGAAGACA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATACAGCACCCAGTGTTCTTCAGGACTATCTTTAGACAAGAAGACA  850

seq1  TGACCACAGTCTTGATGCACATCCATCACATAGAGCAGCCATTTTGTTCT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACAGTCTTGATGCACATCCATCACATAGAGCAGCCATTTTGTTCT  900

seq1  AGAAGACAAAATCAGTATGGTACCAGTACACATGATGGGGAATAACAAGG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACAAAATCAGTATGGTACCAGTACACATGATGGGGAATAACAAGG  950

seq1  AATAAAGATTTTTGTCAACAAAAGGAATTGGTTTTTCATGATTAGATGCT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGATTTTTGTCAACAAAAGGAATTGGTTTTTCATGATTAGATGCT  1000

seq1  TTCCAGAAAAGGAATAGGTTTGTTAGTCACTTAACAGATGATCCACCATT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAAAAGGAATAGGTTTGTTAGTCACTTAACAGATGATCCACCATT  1050

seq1  GGGCAGTCTACGAACTCCCAGCTTAGCCAGGAGTATTCAAATGAGAGTGT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTCTACGAACTCCCAGCTTAGCCAGGAGTATTCAAATGAGAGTGT  1100

seq1  AATAGGATGCTGAGCTCCCACAGAAGCAAAACATTAACCAGCCTGAGGAA  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGATGCTGAGCTCCCACAGAAGCAAAACATTAACCAGCCTGAGGAA  1150

seq1  TTC  1137
      |||
seq2  TTC  1153

seq1: chr3_41059166_41059737
seq2: B6Ng01-078I22.g_71_641 (reverse)

seq1  CTGGTATAGTGACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCAG  50
      |||||||||  ||||||||| ||| ||||||||||||||||||||| |||
seq2  CTGGTATAGGAACAGACAAGTAGAGCAATGGAATAGAATTGAAGACCCAG  50

seq1  AAACGAATCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAA  100
      ||| ||| |||||||||||||| |||||| |||| || ||||||||||||
seq2  AAATGAACCCACACACCTATGGGCACTTGTTCTTTGAAAAGGGAGCTAAA  100

seq1  ACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAA  150
      ||||||||| |||| |||||||||||||||||||||||||||||||||||
seq2  ACCATCCAGGGGAATAAAGACAGCATTTTCAACAAATGGTGCTGGCACAA  150

seq1  CTGGTTGTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTT  200
      ||||| |||||||||||||| ||||||  |||||||| ||||||||| ||
seq2  CTGGTGGTTATCATGTAGAAAAATGCG-GTTGATCCATTCCTATCTCATT  199

seq1  GTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAG  250
      ||||||||||| ||| ||||||||  ||||||| ||||||||| ||||||
seq2  GTACTAAGGTC-AATTTAAGTGGACTAAGGAACTCCACATAAATCCAGAG  248

seq1  ACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGT  300
      |||||||||||||||||||||||||| ||||||||||| |||||||||| 
seq2  ACACTGAAACTTATAGAGGAGAAAGTAGGGAAAAGCCTCGAAGATATGGG  298

seq1  CACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGAT  350
       ||||||||||  |||||| ||||||||||||||||||||||||||||||
seq2  GACAGGGGAAATTTTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGAT  348

seq1  TGAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCA  400
       |||||| ||| ||||||||||||| ||| ||||||||||||||||||||
seq2  CGAGAATCGACTAATGGGACCTCATAAAATTGCAAAGCTTCTGCAAGGCA  398

seq1  AAAGACACCGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGAT  449
      |||| ||| |||||||||||||||||| |||||||| |||||||||||| 
seq2  AAAGTCACTGTCAATAAGACAAAAAGGCCACCAACAAATTGGGAAAGGAC  448

seq1  CTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAG  499
      |||| ||||||||||||||||||||||||||| ||||||||||||| |||
seq2  CTTTGCCTATCCTAAATCAGATAGGGGACTAACATCCAATATATATAAAG  498

seq1  AACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGG  549
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AACTCAAGAAGGTGGATTCCAGAAAATCAAATGACCCCATTAAAAAATGG  548

seq1  GGCTCAGAGCTAAACAAAGAATT  572
      |||||||||||||||||||||||
seq2  GGCTCAGAGCTAAACAAAGAATT  571