BAC Information

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BAC

Clone NameB6Ng01-079F06
Chromosome3 (Build37)
Map Location 6,030,817 - 6,167,646
singlet/doubletdoublet
Overlap geneLOC100041193, EG620570
Upstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165
Downstream geneLOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079F06.bB6Ng01-079F06.g
ACCDH894768DH894769
length1,1151,148
definitionDH894768|Mus musculus domesticus DNA, BAC clone: B6Ng01-079F06, 5' end.DH894769|Mus musculus domesticus DNA, BAC clone: B6Ng01-079F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,030,817 - 6,031,970)(6,166,447 - 6,167,646)
sequence
gaattctacaaaatgaataattagcttccttagttagggattttattgct
ttgaaaagacaccattaccaaggcaactcttatgacgaaaaacaattcat
tggagctggcttatagtttcagatgtttagtccattatcatgttggtcag
aaagaatggcagcttccaggcagacatggtactgaagaaaccaagagtta
tgcaacttgatcagaaggcagccaggaggagactagattccacgatgggt
aaagcttgaatataggagacctcaaagcctacccatatagtgacacactt
cctccaaccatgccacacctattcaaaaaaggcaataccttctctaatag
agtaccactccctatggaccaagtattcaaacacatgaatcaatgggggc
aagacctatttaaactaccacagccactatgcttcaaaaatctgtattaa
aggtgtgcattgattttggtcaaaatcatgtttcatcccatgtctagatc
atgatcaaaagcctgtgtcttctccagcctcaagatctggatcaaaggca
tgttgtcttcctgcctcaagatacaggtcagttatggtttccatttctgg
attgtagttcatttcagatatagtcaaagtgacatcccagaagagccatc
atagtagataaccccaatgtttcaagtatattggtaaaatattagttaca
ttttcatcctcataggactcttactgataatctgactgagctatactaga
atgattgagttttttctatatattgaaaggatatttttcatattatgtaa
aataaattattgacattggcaatagtgctcaaaatgtatctctgcagcag
tgaatgtatagtgtttaggacacgctcaccagcacagcaaaataaataac
caatatgctggcagcacagtccgctggttgatgacaatacctttcacctg
ttgctctgatgtgaaaccctctttaagcttctactgagtggggatgctct
ctctctctctctctctctcctctcctcctcctctctctacctctccatct
cctcctctctcgtccccccctagaattttctttattagaattcaatgtat
ccctcagtttcccct

gaattctctcatctgtatgatgattcacaaaaacaagagaaggacatgaa
tggcaaccagcaagaacaagaaaaaaagtgatgtgaggaaaatgcacaaa
agccagcaggctggcccctcatatgtgcagaactgtgtcaaagaaaatca
ggaaatcctagggcgcaggcaacagctagagacaccgagtgatgaggata
atgactcttccttaagtgagtgtctgtcttctccctcatctagtctccat
tttgggggctctgatacagtgacttcagatgaggataaagaagtctgggt
gagacatacccagcctgttctgagtgctaaaagcagaagtcacagtgcaa
ggtctcacaagtggcctcgaattgaggcagaacctgtgccaaatttatta
atgaaaagaccttgtttgcatggcaatgcactaaggagagtcccatgcag
aaagaggctgatgaagagcagctcctcgcagaggacacagaagcaggaga
ggatgctagtgcagaggaagaagtgggaggcgctagctcagaggaagtat
gctcttctctccagctccagtacctccagtgagaatgacctcagtagtga
ttcctcgtccagctcctccaccgatggagaagaggacctgtgtgcatctg
cagtgagaaccccagcaaccccgctgctcccccaggaagtattgatgaag
atttggggtgataaaagcttccttccctcctcaggtcactgccaatgaag
aaattaatgctaccacaactgacagtgatgtggagattgttaccaatcta
gtggagaaagctatcggtctcgttcaacccttggcactccaaatctcatt
ggagccaaggttcaagtttgcatacaggacggccacaggagcctcgaaac
cgcaataggatctctactgtatacagccctgagcagatgcagcagagttg
tgacctactgtgatgagatgacctatgtagtaccaccacttctgctagat
gactcccaactactagcgcttcatacatcaatcatctactctggcagctc
tgtatctactcactgtgtcagtagcagcttccagttcggactgagctatc
tacagcaatgccatgttctctgtgccatgagtgagaaactggatctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_6030817_6031970
seq2: B6Ng01-079F06.b_51_1165

seq1  GAATTCTACAAAATGAATAATTAGCTTCCTTAGTTAGGGATTTTATTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAAAATGAATAATTAGCTTCCTTAGTTAGGGATTTTATTGCT  50

seq1  TTGAAAAGACACCATTACCAAGGCAACTCTTATGACGAAAAACAATTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGACACCATTACCAAGGCAACTCTTATGACGAAAAACAATTCAT  100

seq1  TGGAGCTGGCTTATAGTTTCAGATGTTTAGTCCATTATCATGTTGGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTGGCTTATAGTTTCAGATGTTTAGTCCATTATCATGTTGGTCAG  150

seq1  AAAGAATGGCAGCTTCCAGGCAGACATGGTACTGAAGAAACCAAGAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGGCAGCTTCCAGGCAGACATGGTACTGAAGAAACCAAGAGTTA  200

seq1  TGCAACTTGATCAGAAGGCAGCCAGGAGGAGACTAGATTCCACGATGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTTGATCAGAAGGCAGCCAGGAGGAGACTAGATTCCACGATGGGT  250

seq1  AAAGCTTGAATATAGGAGACCTCAAAGCCTACCCATATAGTGACACACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTGAATATAGGAGACCTCAAAGCCTACCCATATAGTGACACACTT  300

seq1  CCTCCAACCATGCCACACCTATTCAAAAAAGGCAATACCTTCTCTAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAACCATGCCACACCTATTCAAAAAAGGCAATACCTTCTCTAATAG  350

seq1  AGTACCACTCCCTATGGACCAAGTATTCAAACACATGAATCAATGGGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCACTCCCTATGGACCAAGTATTCAAACACATGAATCAATGGGGGC  400

seq1  AAGACCTATTTAAACTACCACAGCCACTATGCTTCAAAAATCTGTATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTATTTAAACTACCACAGCCACTATGCTTCAAAAATCTGTATTAA  450

seq1  AGGTGTGCATTGATTTTGGTCAAAATCATGTTTCATCCCATGTCTAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGCATTGATTTTGGTCAAAATCATGTTTCATCCCATGTCTAGATC  500

seq1  ATGATCAAAAGCCTGTGTCTTCTCCAGCCTCAAGATCTGGATCAAAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCAAAAGCCTGTGTCTTCTCCAGCCTCAAGATCTGGATCAAAGGCA  550

seq1  TGTTGTCTTCCTGCCTCAAGATACAGGTCAGTTATGGTTTCCATTTCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCTTCCTGCCTCAAGATACAGGTCAGTTATGGTTTCCATTTCTGG  600

seq1  ATTGTAGTTCATTTCAGATATAGTCAAAGTGACATCCCAGAAGAGCCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGTTCATTTCAGATATAGTCAAAGTGACATCCCAGAAGAGCCATC  650

seq1  ATAGTAGATAACCCCAATGTTTCAAGTATATTGGTAAAATATTAGTTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGATAACCCCAATGTTTCAAGTATATTGGTAAAATATTAGTTACA  700

seq1  TTTTCATCCTCATAGGACTCTTACTGATAATCTGACTGAGCTATACTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATCCTCATAGGACTCTTACTGATAATCTGACTGAGCTATACTAGA  750

seq1  ATGATTGAGTTTTTTCTATATATTGAAAGGATATTTTTCATATTATGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTGAGTTTTTTCTATATATTGAAAGGATATTTTTCATATTATGTAA  800

seq1  AATAAATTATTGACATTGGCAATAGTGCTCAAAATGTATCTCTGCAGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTATTGACATTGGCAATAGTGCTCAAAATGTATCTCTGCAGCAG  850

seq1  TGAATGTATAGTGTTTAGGACACGCTCACCAGCACAGCAAAATAAATAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTATAGTGTTTAGGACACGCTCACCAGCACAGCAAAATAAATAAC  900

seq1  CAATATGCTGGCAGCACAGTCCGCTGGTTGATGACAAATACCTTTCACCT  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAATATGCTGGCAGCACAGTCCGCTGGTTGATGAC-AATACCTTTCACCT  949

seq1  GTTGCTCTGATGTGAAAACCCTCTTTAAGCTTCTACTGAGGTGGGGATGC  1000
      |||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  GTTGCTCTGATGTG-AAACCCTCTTTAAGCTTCTACTGA-GTGGGGATGC  997

seq1  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  1050
      |                     |||   |||   |||   || ||| || 
seq2  T--------------------CTCTCTCTCTCTCTCTCTCTCCTCTCCTC  1027

seq1  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCCTCTCTCT  1100
      || ||   ||| | ||| | ||| || ||   || ||       | | | 
seq2  CTCCTCTCTCTACCTCTCCATCTCCTCCTCTCTCGTC-------CCCCCC  1070

seq1  TAGATATTTTCTTTATTTAGATTTCAAATGTTATCCCCTTTCCCAGTTTC  1150
      |||| |||||||||| ||||| ||| |||| |||||     | |||||||
seq2  TAGA-ATTTTCTTTA-TTAGAATTC-AATG-TATCC-----CTCAGTTTC  1111

seq1  CCCT  1154
      ||||
seq2  CCCT  1115


seq1: chr3_6166447_6167646
seq2: B6Ng01-079F06.g_69_1216 (reverse)

seq1  TTAGATCCAGTTCTCCTCACTTCATTGCCCACAGAAGAACCATTTGCACT  50
      |||||||||||  | ||||| |||| || || |||| |     | ||   
seq2  TTAGATCCAGT--TTCTCAC-TCATGGCACAGAGAACA-----TGGC---  39

seq1  ATTGCTTGTAAGATTAGCTTCAGTCTCTGACACTGTGAAAGGCTGGCTAC  100
      ||||| ||| ||| |||| ||||  || || |||| |||  ||| |||||
seq2  ATTGC-TGT-AGA-TAGC-TCAG--TCCGA-ACTG-GAA--GCT-GCTAC  78

seq1  TGGGCACAGTTGAAGTAGTATCAGAGGCTTGCTCAGAGGTAGATGGATTT  150
      | | ||||||   |||||   |||||   ||| |||| |||||||   ||
seq2  T-GACACAGT--GAGTAGATACAGAG--CTGC-CAGA-GTAGATG--ATT  119

seq1  GAATTGTTAATGGAAGCGCTAGTAGTTTGTGAGTCCATTCTAGCAGAAGT  200
      ||  |||  || ||||||||||||| ||| |||||   ||||||||||||
seq2  GA--TGT--AT-GAAGCGCTAGTAG-TTGGGAGTC--ATCTAGCAGAAGT  161

seq1  GGTTGGTACTACAATAGGTTCATCTTCATCAACAGTAAGGTCCACAACTT  250
      || ||||||||| ||||| ||||| ||||| ||||| |||| |||||| |
seq2  GG-TGGTACTAC-ATAGG-TCATC-TCATC-ACAGT-AGGT-CACAAC-T  203

seq1  CTGCTGCATTCTGCCTCAGGGGCTGTATAACAGTAGAGATCCTATTGCGG  300
      |||||||| |||| |||| ||||||||| |||||||||||||||||||||
seq2  CTGCTGCA-TCTG-CTCA-GGGCTGTAT-ACAGTAGAGATCCTATTGCGG  249

seq1  TTTCGAGGCTCCTGTGGCCGTCCTGTATGCAAACTTGAACCTTGGCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGAGGCTCCTGTGGCCGTCCTGTATGCAAACTTGAACCTTGGCTCCA  299

seq1  ATGAGATTTGGAGTGCCCAAGGGTTGAACGAGACCGATAGCTTTCTCCAC  400
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGAGATTTGGAGTG-CCAAGGGTTGAACGAGACCGATAGCTTTCTCCAC  348

seq1  TAGATTGGTAACAATCTCCACATCACTGTCAGTTGTGGTAGCATTAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGGTAACAATCTCCACATCACTGTCAGTTGTGGTAGCATTAATTT  398

seq1  CTTCATTGGCAGTGACCTGAGGAGGGAAGGAAGCTTTTATCACCCCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTGGCAGTGACCTGAGGAGGGAAGGAAGCTTTTATCACCCCAAAT  448

seq1  CTTCATCAATACTTCCTGGGGGAGCAGCGGGGTTGCTGGGGTTCTCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCAATACTTCCTGGGGGAGCAGCGGGGTTGCTGGGGTTCTCACTG  498

seq1  CAGATGCACACAGGTCCTCTTCTCCATCGGTGGAGGAGCTGGACGAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCACACAGGTCCTCTTCTCCATCGGTGGAGGAGCTGGACGAGGAA  548

seq1  TCACTACTGAGGTCATTCTCACTGGAGGTACTGGAGCTGGAGAGAAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTACTGAGGTCATTCTCACTGGAGGTACTGGAGCTGGAGAGAAGAGC  598

seq1  ATACTTCCTCTGAGCTAGCGCCTCCCACTTCTTCCTCTGCACTAGCATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCCTCTGAGCTAGCGCCTCCCACTTCTTCCTCTGCACTAGCATCC  648

seq1  TCTCCTGCTTCTGTGTCCTCTGCGAGGAGCTGCTCTTCATCAGCCTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGCTTCTGTGTCCTCTGCGAGGAGCTGCTCTTCATCAGCCTCTTT  698

seq1  CTGCATGGGACTCTCCTTAGTGCATTGCCATGCAAACAAGGTCTTTTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGGGACTCTCCTTAGTGCATTGCCATGCAAACAAGGTCTTTTCAT  748

seq1  TAATAAATTTGGCACAGGTTCTGCCTCAATTCGAGGCCACTTGTGAGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATTTGGCACAGGTTCTGCCTCAATTCGAGGCCACTTGTGAGACC  798

seq1  TTGCACTGTGACTTCTGCTTTTAGCACTCAGAACAGGCTGGGTATGTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTGTGACTTCTGCTTTTAGCACTCAGAACAGGCTGGGTATGTCTC  848

seq1  ACCCAGACTTCTTTATCCTCATCTGAAGTCACTGTATCAGAGCCCCCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGACTTCTTTATCCTCATCTGAAGTCACTGTATCAGAGCCCCCAAA  898

seq1  ATGGAGACTAGATGAGGGAGAAGACAGACACTCACTTAAGGAAGAGTCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGACTAGATGAGGGAGAAGACAGACACTCACTTAAGGAAGAGTCAT  948

seq1  TATCCTCATCACTCGGTGTCTCTAGCTGTTGCCTGCGCCCTAGGATTTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCATCACTCGGTGTCTCTAGCTGTTGCCTGCGCCCTAGGATTTCC  998

seq1  TGATTTTCTTTGACACAGTTCTGCACATATGAGGGGCCAGCCTGCTGGCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTCTTTGACACAGTTCTGCACATATGAGGGGCCAGCCTGCTGGCT  1048

seq1  TTTGTGCATTTTCCTCACATCACTTTTTTTCTTGTTCTTGCTGGTTGCCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCATTTTCCTCACATCACTTTTTTTCTTGTTCTTGCTGGTTGCCA  1098

seq1  TTCATGTCCTTCTCTTGTTTTTGTGAATCATCATACAGATGAGAGAATTC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTCCTTCTCTTGTTTTTGTGAATCATCATACAGATGAGAGAATTC  1148


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