BAC Information

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BAC

Clone NameB6Ng01-079H02
Chromosome3 (Build37)
Map Location 81,884,113 - 82,034,900
singlet/doubletdoublet
Overlap geneGucy1a3
Upstream genePdgfc, LOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3
Downstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079H02.bB6Ng01-079H02.g
ACCDH894851DH894852
length1,1081,171
definitionDH894851|Mus musculus domesticus DNA, BAC clone: B6Ng01-079H02, 5' end.DH894852|Mus musculus domesticus DNA, BAC clone: B6Ng01-079H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,033,779 - 82,034,900)(81,884,113 - 81,885,326)
sequence
gaattccttgcagttgtaggtcagagacacaaagctgcttagagcagcaa
cttcaagacctccagtttccagaaatctgtattctatcctttgctacttg
actccaaatgaccaaggaaagtctttgaagcatctgccagcaagatattt
gatttaccttgactctgtgctatagtttacaagccagatgtagacccagc
agacaaaaagggtacattatataaaactatggggaccaggaatggaactg
attcaagagggtcagcacagagtccattcatcacaatttatacttcagcc
tgcattgtttgacccttgtatcaacctgcagaaatctctgaagaatttta
tggaatgatgatgatcagattttcaacttctgaagatgaaaagggaggat
tgcaggagaagaccacaggataggtagaactttcaatagagctgggagcc
cataaagaaatggacaagttatggaaacttcacaatattgacaggagtta
ggatggatacacaaagacagtgtggctaaacagaggctaaatacaatgcc
agtacttctggatataaagggagtgtagtgctgtttactgaagaggagat
ttgtgggtgggaaggagaacttggaaaaaaattcaaatttcacttagtac
agggagaatgtgctatgttctggggatagtgcccaaagcagagagttagg
agagctctgggctgagacaaggcattcttatacaggtagaaatgaatgtc
acaacaagagacaaagtagtctggagaagagtctgagagaagagacaagg
gaagcccagtcatgtttcccagagaaacttgggttgtggcggggacgtgt
ttacacgccactccctagtgcattgctagacaagatgtcagaagtcccaa
ttacatcttttcatttgcctttcaaataattttagcataaaagtaaatac
attcttttatatatctttatgccctcatggcttctacagtgtctcaaaga
aaagacagccccaaagacagatgagattcttgatgaaagtgatagatgat
acattttaaaatagatattttctttattacattcaatgttatctcttctc
gatcctcg
gaattcattggctattaaacattctccatgagagagaaattcatgaagga
gacaagagaatgatattcacagaagtcctgctctttggcaactgtgaatc
ttatgaaacactaatttcttcttctaacataaggaaatcaagggtattca
atgtaacaatattttaaaggacatatagtgctttacatgtagcaaactct
tatcaattgggagcttcataatccatttaagtattgtgtttgttaaaaat
acaaataattcttattcacacatgttccatttgagttaaaaacaatgcac
ttaaacctcataccagcattacagcgtacataagccggattcatcatccc
ttcccttattctcgatggagctcaagaagcagtagccaatgtcaacagaa
cagtgggcccagatgtgtgtgattccattaatccatgtgaaacaaagtta
gtccactctggggtctgtcttaattcattatcttctaaattaaatgaatt
cagcttgtggagcagctcttatttattttgtctttggaattgatttcttt
cagttttattcttgccaagagactatttaaaatgcccatgaataattgat
ctttaagagcagactcactctttaggtgtcccgtggaagtcagtggtttc
ttccatctgaatgaacattaaaactgacttccaggaagaaaagagttact
cacatgtaaaaacagcagagttgacagaactgagtcaccagtactgagct
agcacttataggagagagaataagatcctatcttgtcaaaagtctataca
ctcatctccacagcctatgaagttatcaaatgacacagtaataggcaggt
agaaaatgtgattatttcaagaacactgatatggggacatttctctgaag
tattgaaactgaatcaaatttcaaaaggaatttaaagtaaaagtagaaca
tagtttgaagagctgtgaaccaacagcacagtgatgtctagatgctgcaa
gagtgattacctctagaaatcccctaaagtagctagatgacaccttgatt
tagagtctgtctgtagaatacaattgaaaattcatgtcacaaccacaagt
gtgggattgttaggtgcacttagctaggattgttctcggaccattcggaa
attccgatatgcatggcctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82033779_82034900
seq2: B6Ng01-079H02.b_44_1151 (reverse)

seq1  CGAGGAAAGAG----GATAACATTTGAAATGTAAATAAAGAAAATATCTA  46
      ||||||  |||    |||||||||   ||||| |||||||||||||||||
seq2  CGAGGATCGAGAAGAGATAACATT--GAATGT-AATAAAGAAAATATCTA  47

seq1  ATTTTTAAAAATGTAATCATCTATTCACTTTTCCTTCAAGAATCTTCATC  96
         ||| ||||||| |||||||| |||||||  | ||||||||| |||||
seq2  ---TTTTAAAATGT-ATCATCTA-TCACTTT--CATCAAGAATC-TCATC  89

seq1  TGTCTTTTGGGGGCTGTCTTTTCTTTTGAGACACTGTAGAAGCCATGAGG  146
      |||||||  |||||||||||||| ||||||||||||||||||||||||||
seq2  TGTCTTT--GGGGCTGTCTTTTC-TTTGAGACACTGTAGAAGCCATGAGG  136

seq1  GCATTAAAGATAATAATAAAAGAATGTATTTACTTTTATTGCTAAAATTA  196
      ||| ||||||||   ||||||||||||||||||||||| |||||||||||
seq2  GCA-TAAAGATA--TATAAAAGAATGTATTTACTTTTA-TGCTAAAATTA  182

seq1  TTTGAAAGGCAAATGAAAAGATGTAATTGGGACTTCTGACATCTTGTCTA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGGCAAATGAAAAGATGTAATTGGGACTTCTGACATCTTGTCTA  232

seq1  GCAATGCACTAGGGAGTGGCGTGTAAACACGTCCCCGCCACAACCCAAGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGCACTAGGGAGTGGCGTGTAAACACGTCCCCGCCACAACCCAAGT  282

seq1  TTCTCTGGGAAACATGACTGGGCTTCCCTTGTCTCTTCTCTCAGACTCTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGGAAACATGACTGGGCTTCCCTTGTCTCTTCTCTCAGACTCTT  332

seq1  CTCCAGACTACTTTGTCTCTTGTTGTGACATTCATTTCTACCTGTATAAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGACTACTTTGTCTCTTGTTGTGACATTCATTTCTACCTGTATAAG  382

seq1  AATGCCTTGTCTCAGCCCAGAGCTCTCCTAACTCTCTGCTTTGGGCACTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTGTCTCAGCCCAGAGCTCTCCTAACTCTCTGCTTTGGGCACTA  432

seq1  TCCCCAGAACATAGCACATTCTCCCTGTACTAAGTGAAATTTGAATTTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGAACATAGCACATTCTCCCTGTACTAAGTGAAATTTGAATTTTT  482

seq1  TTCCAAGTTCTCCTTCCCACCCACAAATCTCCTCTTCAGTAAACAGCACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGTTCTCCTTCCCACCCACAAATCTCCTCTTCAGTAAACAGCACT  532

seq1  ACACTCCCTTTATATCCAGAAGTACTGGCATTGTATTTAGCCTCTGTTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCCTTTATATCCAGAAGTACTGGCATTGTATTTAGCCTCTGTTTA  582

seq1  GCCACACTGTCTTTGTGTATCCATCCTAACTCCTGTCAATATTGTGAAGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACTGTCTTTGTGTATCCATCCTAACTCCTGTCAATATTGTGAAGT  632

seq1  TTCCATAACTTGTCCATTTCTTTATGGGCTCCCAGCTCTATTGAAAGTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAACTTGTCCATTTCTTTATGGGCTCCCAGCTCTATTGAAAGTTC  682

seq1  TACCTATCCTGTGGTCTTCTCCTGCAATCCTCCCTTTTCATCTTCAGAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATCCTGTGGTCTTCTCCTGCAATCCTCCCTTTTCATCTTCAGAAG  732

seq1  TTGAAAATCTGATCATCATCATTCCATAAAATTCTTCAGAGATTTCTGCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATCTGATCATCATCATTCCATAAAATTCTTCAGAGATTTCTGCA  782

seq1  GGTTGATACAAGGGTCAAACAATGCAGGCTGAAGTATAAATTGTGATGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGATACAAGGGTCAAACAATGCAGGCTGAAGTATAAATTGTGATGAA  832

seq1  TGGACTCTGTGCTGACCCTCTTGAATCAGTTCCATTCCTGGTCCCCATAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCTGTGCTGACCCTCTTGAATCAGTTCCATTCCTGGTCCCCATAG  882

seq1  TTTTATATAATGTACCCTTTTTGTCTGCTGGGTCTACATCTGGCTTGTAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATAATGTACCCTTTTTGTCTGCTGGGTCTACATCTGGCTTGTAA  932

seq1  ACTATAGCACAGAGTCAAGGTAAATCAAATATCTTGCTGGCAGATGCTTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGCACAGAGTCAAGGTAAATCAAATATCTTGCTGGCAGATGCTTC  982

seq1  AAAGACTTTCCTTGGTCATTTGGAGTCAAGTAGCAAAGGATAGAATACAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTTTCCTTGGTCATTTGGAGTCAAGTAGCAAAGGATAGAATACAG  1032

seq1  ATTTCTGGAAACTGGAGGTCTTGAAGTTGCTGCTCTAAGCAGCTTTGTGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGGAAACTGGAGGTCTTGAAGTTGCTGCTCTAAGCAGCTTTGTGT  1082

seq1  CTCTGACCTACAACTGCAAGGAATTC  1122
      ||||||||||||||||||||||||||
seq2  CTCTGACCTACAACTGCAAGGAATTC  1108

seq1: chr3_81884113_81885326
seq2: B6Ng01-079H02.g_66_1236

seq1  GAATTCATTGGCTATTAAACATTCTCCATGAGAGAGAAATTCATGAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGCTATTAAACATTCTCCATGAGAGAGAAATTCATGAAGGA  50

seq1  GACAAGAGAATGATATTCACAGAAGTCCTGCTCTTTGGCAACTGTGAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAGAATGATATTCACAGAAGTCCTGCTCTTTGGCAACTGTGAATC  100

seq1  TTATGAAACACTAATTTCTTCTTCTAACATAAGGAAATCAAGGGTATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAACACTAATTTCTTCTTCTAACATAAGGAAATCAAGGGTATTCA  150

seq1  ATGTAACAATATTTTAAAGGACATATAGTGCTTTACATGTAGCAAACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACAATATTTTAAAGGACATATAGTGCTTTACATGTAGCAAACTCT  200

seq1  TATCAATTGGGAGCTTCATAATCCATTTAAGTATTGTGTTTGTTAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATTGGGAGCTTCATAATCCATTTAAGTATTGTGTTTGTTAAAAAT  250

seq1  ACAAATAATTCTTATTCACACATGTTCCATTTGAGTTAAAAACAATGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAATTCTTATTCACACATGTTCCATTTGAGTTAAAAACAATGCAC  300

seq1  TTAAACCTCATACCAGCATTACAGCGTACATAAGCCGGATTCATCATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCTCATACCAGCATTACAGCGTACATAAGCCGGATTCATCATCCC  350

seq1  TTCCCTTATTCTCGATGGAGCTCAAGAAGCAGTAGCCAATGTCAACAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTATTCTCGATGGAGCTCAAGAAGCAGTAGCCAATGTCAACAGAA  400

seq1  CAGTGGGCCCAGATGTGTGTGATTCCATTAATCCATGTGAAACAAAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGCCCAGATGTGTGTGATTCCATTAATCCATGTGAAACAAAGTTA  450

seq1  GTCCACTCTGGGGTCTGTCTTAATTCATTATCTTCTAAATTAAATGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACTCTGGGGTCTGTCTTAATTCATTATCTTCTAAATTAAATGAATT  500

seq1  CAGCTTGTGGAGCAGCTCTTATTTATTTTGTCTTTGGAATTGATTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGTGGAGCAGCTCTTATTTATTTTGTCTTTGGAATTGATTTCTTT  550

seq1  CAGTTTTATTCTTGCCAAGAGACTATTTAAAATGCCCATGAATAATTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTATTCTTGCCAAGAGACTATTTAAAATGCCCATGAATAATTGAT  600

seq1  CTTTAAGAGCAGACTCACTCTTTAGGTGTCCCGTGGAAGTCAGTGGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGAGCAGACTCACTCTTTAGGTGTCCCGTGGAAGTCAGTGGTTTC  650

seq1  TTCCATCTGAATGAACATTAAAACTGACTTCCAGGAAGAAAAGAGTTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCTGAATGAACATTAAAACTGACTTCCAGGAAGAAAAGAGTTACT  700

seq1  CACATGTAAAAACAGCAGAGTTGACAGAACTGAGTCACCAGTACTGAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTAAAAACAGCAGAGTTGACAGAACTGAGTCACCAGTACTGAGCT  750

seq1  AGCACTTATAGGAGAGAGAATAAGATCCTATCTTGTCAAAAGTCTATACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTATAGGAGAGAGAATAAGATCCTATCTTGTCAAAAGTCTATACA  800

seq1  CTCATCTCCACAGCCTATGAAGTTATCAAATGACACAGTAATAGGCAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTCCACAGCCTATGAAGTTATCAAATGACACAGTAATAGGCAGGT  850

seq1  AGAAAATGTGATTATTTCAAGAACACTGATATGGGGACATTTCTCTGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGTGATTATTTCAAGAACACTGATATGGGGACATTTCTCTGAAG  900

seq1  TATTGAAACTGAATCAAAATTTCAAAAGGGAATTTAAAGTAAAAGGTAGG  950
      ||||||||||||||| ||||||||||| |||||||||||||||| ||| |
seq2  TATTGAAACTGAATC-AAATTTCAAAA-GGAATTTAAAGTAAAA-GTA-G  946

seq1  AACAATAGTTTGAAGAGGCTGTGAACCAACAGGCACAGGTGATGTCTAGA  1000
      ||| |||||||||||| |||||||||||||| ||||| ||||||||||||
seq2  AAC-ATAGTTTGAAGA-GCTGTGAACCAACA-GCACA-GTGATGTCTAGA  992

seq1  TGCTGCAAGGAGTTGATTACCTCTAGAAATTCCCCCTAAAAGTAGCCTAG  1050
      |||||||| ||| |||||||||||||||||  ||||| ||||||| ||||
seq2  TGCTGCAA-GAG-TGATTACCTCTAGAAAT--CCCCT-AAAGTAG-CTAG  1036

seq1  ATGACACCTTGATTTTAGGAAGTCTGGTCTGTAGAATTACAAAATGAAAA  1100
      |||||||||||| |||||  ||||| |||||||||| ||| || ||||||
seq2  ATGACACCTTGA-TTTAG--AGTCT-GTCTGTAGAA-TAC-AATTGAAAA  1080

seq1  TTTCTATGGTCACAACCCACCAAAGTTGTGGAATTTGTTATAGTGGCAAA  1150
      ||  |   ||||||| ||||  ||| ||||| | ||||||    ||   |
seq2  TTCAT---GTCACAA-CCAC--AAG-TGTGGGA-TTGTTA----GGTGCA  1118

seq1  CTCTAGCTAGCGATTTGTTTCTGAAACAAATTCTGAAATAATTCAGAGAG  1200
      || ||||||| ||||  | || ||     |||| ||   ||||| ||   
seq2  CT-TAGCTAG-GATTGTTCTCGGA---CCATTCGGA---AATTCCGA---  1157

seq1  TATGCATGGCCTGA  1214
      ||||||||||||||
seq2  TATGCATGGCCTGA  1171