BAC Information

Click to search

BAC

Clone NameB6Ng01-080I15
Chromosome3 (Build37)
Map Location 104,300,246 - 104,419,101
singlet/doubletdoublet
Overlap geneLrig2
Upstream geneSyt6, Atg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452, Rsbn1, Phtf1, Magi3, EG433634, LOC668622
Downstream geneSlc16a1, EG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik, 1700095B22Rik, Kcnd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080I15.bB6Ng01-080I15.g
ACCDH895650DH895651
length957489
definitionDH895650|Mus musculus domesticus DNA, BAC clone: B6Ng01-080I15, 5' end.DH895651|Mus musculus domesticus DNA, BAC clone: B6Ng01-080I15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,300,246 - 104,301,180)(104,418,607 - 104,419,101)
sequence
gaattcacttggtagaccaggctggcccctcccgagtgctggaattaaag
gcattcgataccacgccccacagagaagcttcttgaagtaaatggtaatt
aactaatcaatgtgcagaaagaaagaactttggaatgttcagccctaaat
gcaaaatctataccaaacctctcccatcaaggttcagaggtctatgaaaa
agaggaggcagaaagatcctaagaaccagaagtaatgggtaacttcaagg
aaacagctgtcttctcaacacaacagggcaaatgcacatacgaactcaga
gactgtgacagcaagcacaagacctgcacaagctcaagccagacaaaacc
ccaaggggaagtgggcacaaagtcccacttcaagacaaaaagctatttgc
aattggttaactgctaggagaggaaatctgttttcttcagtggagtgata
ctgagtctatcaaccatacgccagggaaggctccatgctcaggaagagat
agccaacacaaattagactccttgtttgcttgcttgcttgtttagttttt
gttcttttctattttatctaattttattttatatgcactggagttttgtt
tgcctgtatatctgtgtgaaagtgtcagatcttggagacagcagtgagca
gccatatgggtgctgggacttgaaccctggtcctttggaagagcagtcaa
cgctcataacccctgagccatcatctctccagccccttgtttttgttttt
taagagaaagaaagagtgctggatgtggtggcagaggtaggtagattttt
gtgagtttgaggccagcctgatccacaaagtgagttcctgtccagcaatg
gctacacagtgaaaccctttttcaaaaaacaaagacaaaaaagagagaga
atgtgaagttggcaatatagggaagtatgtaagatctggggaggagttgg
aggaaga
aagcccattctcaagtcagaggccaatatgaactgtatgagtccctgtct
aaaaggaaagaaaaagaaacccaacaacagtaatgaaagggaagcagggt
tgggcatagtggtacaagcctatcgtcccatcagtcagaaggcttaggca
aagaatatcgagttcaaggccaagctgggctatataacaagactgtctca
gagtaaaaggaggtgggtggggagaaggaaagggagggatacagtaaaaa
caagaacactcccaggggacttaaaatattttatataatctgtagttata
tttgagaatgagctcacaggctttaataaacttttactaaaataacttac
taacgctagatgttcctgaaatattaacctgaactcatccatttttgtct
cattattgttgcaatagtagctgactctgtagcccagcctgacctgagac
tcactgggtagtccaaggtgcttttgagttctcaggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_104300246_104301180
seq2: B6Ng01-080I15.b_62_995

seq1  GGCCCCTCCCGAGTGCTGGAATTAAAGGCATTCGATACCACGCCCCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTCCCGAGTGCTGGAATTAAAGGCATTCGATACCACGCCCCACAG  50

seq1  AGAAGCTTCTTGAAGTAAATGGTAATTAACTAATCAATGTGCAGAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTCTTGAAGTAAATGGTAATTAACTAATCAATGTGCAGAAAGAA  100

seq1  AGAACTTTGGAATGTTCAGCCCTAAATGCAAAATCTATACCAAACCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTGGAATGTTCAGCCCTAAATGCAAAATCTATACCAAACCTCTC  150

seq1  CCATCAAGGTTCAGAGGTCTATGAAAAAGAGGAGGCAGAAAGATCCTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAGGTTCAGAGGTCTATGAAAAAGAGGAGGCAGAAAGATCCTAAG  200

seq1  AACCAGAAGTAATGGGTAACTTCAAGGAAACAGCTGTCTTCTCAACACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAAGTAATGGGTAACTTCAAGGAAACAGCTGTCTTCTCAACACAA  250

seq1  CAGGGCAAATGCACATACGAACTCAGAGACTGTGACAGCAAGCACAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAAATGCACATACGAACTCAGAGACTGTGACAGCAAGCACAAGAC  300

seq1  CTGCACAAGCTCAAGCCAGACAAAACCCCAAGGGGAAGTGGGCACAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAAGCTCAAGCCAGACAAAACCCCAAGGGGAAGTGGGCACAAAGT  350

seq1  CCCACTTCAAGACAAAAAGCTATTTGCAATTGGTTAACTGCTAGGAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTCAAGACAAAAAGCTATTTGCAATTGGTTAACTGCTAGGAGAGG  400

seq1  AAATCTGTTTTCTTCAGTGGAGTGATACTGAGTCTATCAACCATACGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGTTTTCTTCAGTGGAGTGATACTGAGTCTATCAACCATACGCCA  450

seq1  GGGAAGGCTCCATGCTCAGGAAGAGATAGCCAACACAAATTAGACTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGCTCCATGCTCAGGAAGAGATAGCCAACACAAATTAGACTCCTT  500

seq1  GTTTGCTTGCTTGCTTGTTTAGTTTTTGTTCTTTTCTATTTTATCTAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTGCTTGCTTGTTTAGTTTTTGTTCTTTTCTATTTTATCTAATT  550

seq1  TTATTTTATATGCACTGGAGTTTTGTTTGCCTGTATATCTGTGTGAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATATGCACTGGAGTTTTGTTTGCCTGTATATCTGTGTGAAAGT  600

seq1  GTCAGATCTTGGAGACAGCAGTGAGCAGCCATATGGGTGCTGGGACTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATCTTGGAGACAGCAGTGAGCAGCCATATGGGTGCTGGGACTTGA  650

seq1  ACCCTGGTCCTTTGGAAGAGCAGTCAACGCTCATAACCCCTGAGCCATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGTCCTTTGGAAGAGCAGTCAACGCTCATAACCCCTGAGCCATCA  700

seq1  TCTCTCCAGCCCCTTGTTTTTGTTTTTTAAGAGAAAGAAAGAGTGCTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCAGCCCCTTGTTTTTGTTTTTTAAGAGAAAGAAAGAGTGCTGGA  750

seq1  TGTGGTGGCAGAGGTAGGTAGATTTTTGTGAGTTTGAGGCCAGCCTGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGGCAGAGGTAGGTAGATTTTTGTGAGTTTGAGGCCAGCCTGATC  800

seq1  CACAAAGTGAGTTCCTGTCCAGCAATGGCTACACAGTGAAACCCTTTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGTGAGTTCCTGTCCAGCAATGGCTACACAGTGAAACCCTTTTTC  850

seq1  AAAAAAACAAAGACAAAAAAGAGAGAGAATGTGAAGTTGGCAATATAGGG  900
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAAAACAAAGACAAAAAAGAGAGAGAATGTGAAGTTGGCAATATAGGG  899

seq1  AAGTATGTGAGGATCT-GGGAGGAGTTGGAGGAAGA  935
      |||||||| | ||||| |||||||||||||||||||
seq2  AAGTATGT-AAGATCTGGGGAGGAGTTGGAGGAAGA  934

seq1: chr3_104418607_104419101
seq2: B6Ng01-080I15.g_69_563 (reverse)

seq1  ACTCCTGAGAACTCAAAGGCACCTTGGACTACCCAGTGAGTCTCAGGTCA  50
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACTCCTGAGAACTCAAAAGCACCTTGGACTACCCAGTGAGTCTCAGGTCA  50

seq1  GGCTGGGCTACAGAGTCAGCTACTATTGCAACAATAATGAGACAAAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGCTACAGAGTCAGCTACTATTGCAACAATAATGAGACAAAAATG  100

seq1  GATGAGTTCAGGTTAATATTTCAGGAACATCTAGCGTTAGTAAGTTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTTCAGGTTAATATTTCAGGAACATCTAGCGTTAGTAAGTTATTT  150

seq1  TAGTAAAAGTTTATTAAAGCCTGTGAGCTCATTCTCAAATATAACTACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAAGTTTATTAAAGCCTGTGAGCTCATTCTCAAATATAACTACAG  200

seq1  ATTATATAAAATATTTTAAGTCCCCTGGGAGTGTTCTTGTTTTTACTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATAAAATATTTTAAGTCCCCTGGGAGTGTTCTTGTTTTTACTGTA  250

seq1  TCCCTCCCTTTCCTTCTCCCCACCCACCTCCTTTTACTCTGAGACAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTTTCCTTCTCCCCACCCACCTCCTTTTACTCTGAGACAGTCT  300

seq1  TGTTATATAGCCCAGCTTGGCCTTGAACTCGATATTCTTTGCCTAAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATATAGCCCAGCTTGGCCTTGAACTCGATATTCTTTGCCTAAGCCT  350

seq1  TCTGACTGATGGGACGATAGGCTTGTACCACTATGCCCAACCCTGCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTGATGGGACGATAGGCTTGTACCACTATGCCCAACCCTGCTTCC  400

seq1  CTTTCATTACTGTTGTTGGGTTTCTTTTTCTTTCCTTTTAGACAGGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTACTGTTGTTGGGTTTCTTTTTCTTTCCTTTTAGACAGGGACT  450

seq1  CATACAGTTCATATTGGCCTCTGACTTGAGAATGGGCTTGAATTC  495
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGTTCATATTGGCCTCTGACTTGAGAATGGGCTTGAATTC  495