BAC Information

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BAC

Clone NameB6Ng01-081O03
Chromosome3 (Build37)
Map Location 94,045,952 - 94,046,891
singlet/doubletsinglet
Overlap geneEG668385
Upstream geneEG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290
Downstream geneEG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081O03.bB6Ng01-081O03.g
ACCDH896602DH896603
length939777
definitionDH896602|Mus musculus domesticus DNA, BAC clone: B6Ng01-081O03, 5' end.DH896603|Mus musculus domesticus DNA, BAC clone: B6Ng01-081O03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagggctcacaaagccatcctagcagctcgctctccagttttcag
agccatgtttgaacatcaaatggaggagagactagcaaactgctttgaga
tccaggagctggattttcaagtctttaaggagatgatggacttcatctac
actgggaaggctccaaccctccatagccactccatggcctgtgatgtgct
ggcagctgctgacaagtatggccttgagggcttgaaggtcatatgtgagg
attccctctgcaggaacctctctgtggagaatgctgcacacactctcatc
gtggctgacctccacagcacagagcagctgaagactcgggctctctccat
ttcattgcagttcatgcttctgaggtctctaaaagctccgggtggaagtc
aatggtggagtcccatccccacttggtggatgaaagattccactccctgg
cttctgcacagagtgttttcttagaatcatcattcaaacgccttaaggga
ttttaggagctagacagatatgaccaacacctctcttccaaaatcaacaa
ccagtctcatctatagaactatgtcataacaccagctgtagccttacttt
ctgcctgcgtgcatctccttcgagtcccagagacaattcttttttaagat
cccacaggctaactcattgctgtattctagagcctaactccagaacacac
tcactgataactcactgtccaatcctgaggggaagcatggaagatgcctg
tagatcttcccttctccttcacttcttgtaaaaccacaactaccagtcta
atccccaactctatagaatctttctggtctgaccacttttcttttttttt
ttgtttgtttgtttgttttttgtttttcccagacagggtttctctgtgta
gcccttggctgttctggaactccctctgagacagggctg
gaattcttagtcatataagtctagaggctgtgattgggcaatgggaggag
ggagtagagtgaaaattttagaaagggtagaaacaaagacagggaaagag
agaaacaagacaggggatggagagaagatgaaggaagaagatgaaccata
acctcgtggtctgaaagagccacaggtagctatggatatcattgaaggtc
aattgagtaatttggcatacatttgccctgtctaggtatgcagcttgtcc
tattatcaattgacttttgaattctttgtgtaatcattttaggggttgat
gatttagtattataaatctgactgataaattacaagcctctggagtttta
ttttactgggttacagggacttgtgcaagcagcagctggctttctgctgg
ctacccaaaggaagcaattggactgggaagatctgggcagcttggcagcc
agtttgcagcagaaaccatgggggcaggtgagatctcggttgaaagcaag
tagccagacatattgtggattattttttataattacacgctacaattctt
tgaatcttttgcctacttttgggatccctttcctcctactgtgttgcttt
gtcctgccttagtatgagggcatgtgtcagtattattgtgacctgtttca
ttttggttgacatctttggcaggtctactatcttctgaaaaagaagcaaa
ggagtagacatagaagaagaagtctgggggggaaagtacttggaggaaag
gagtaagggaaatctggtgttgggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_94045952_94046891
seq2: B6Ng01-081O03.b_49_987 (reverse)

seq1  CAGCCCAGTCTACAGAGGGAGTTCCAGGACAGCC-AGGGCTACACAGAGA  49
      |||||| |||| ||||||||||||||| |||||| |||||||||||||||
seq2  CAGCCCTGTCT-CAGAGGGAGTTCCAGAACAGCCAAGGGCTACACAGAGA  49

seq1  AACCCTGTCTGGGAAAAAACAAAAAACAAACAAACAAACAAAAAAAAAAA  99
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTCTGGG-AAAAACAAAAAACAAACAAACAAACAAAAAAAAAAA  98

seq1  GAAAAGTGGTCAGACCAGAAAGATTCTATAGAGTTGGGGATTAGACTGGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGGTCAGACCAGAAAGATTCTATAGAGTTGGGGATTAGACTGGT  148

seq1  AGTTGTGGTTTTACAAGAAGTGAAGGAGAAGGGAAGATCTACAGGCATCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGGTTTTACAAGAAGTGAAGGAGAAGGGAAGATCTACAGGCATCT  198

seq1  TCCATGCTTCCCCTCAGGATTGGACAGTGAGTTATCAGTGAGTGTGTTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCTTCCCCTCAGGATTGGACAGTGAGTTATCAGTGAGTGTGTTCT  248

seq1  GGAGTTAGGCTCTAGAATACAGCAATGAGTTAGCCTGTGGGATCTTAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTAGGCTCTAGAATACAGCAATGAGTTAGCCTGTGGGATCTTAAAA  298

seq1  AAGAATTGTCTCTGGGACTCGAAGGAGATGCACGCAGGCAGAAAGTAAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTGTCTCTGGGACTCGAAGGAGATGCACGCAGGCAGAAAGTAAGG  348

seq1  CTACAGCTGGTGTTATGACATAGTTCTATAGATGAGACTGGTTGTTGATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCTGGTGTTATGACATAGTTCTATAGATGAGACTGGTTGTTGATT  398

seq1  TTGGAAGAGAGGTGTTGGTCATATCTGTCTAGCTCCTAAAATCCCTTAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGAGAGGTGTTGGTCATATCTGTCTAGCTCCTAAAATCCCTTAAG  448

seq1  GCGTTTGAATGATGATTCTAAGAAAACACTCTGTGCAGAAGCCAGGGAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTGAATGATGATTCTAAGAAAACACTCTGTGCAGAAGCCAGGGAGT  498

seq1  GGAATCTTTCATCCACCAAGTGGGGATGGGACTCCACCATTGACTTCCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTTTCATCCACCAAGTGGGGATGGGACTCCACCATTGACTTCCAC  548

seq1  CCGGAGCTTTTAGAGACCTCAGAAGCATGAACTGCAATGAAATGGAGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGCTTTTAGAGACCTCAGAAGCATGAACTGCAATGAAATGGAGAGA  598

seq1  GCCCGAGTCTTCAGCTGCTCTGTGCTGTGGAGGTCAGCCACGATGAGAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGAGTCTTCAGCTGCTCTGTGCTGTGGAGGTCAGCCACGATGAGAGT  648

seq1  GTGTGCAGCATTCTCCACAGAGAGGTTCCTGCAGAGGGAATCCTCACATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAGCATTCTCCACAGAGAGGTTCCTGCAGAGGGAATCCTCACATA  698

seq1  TGACCTTCAAGCCCTCAAGGCCATACTTGTCAGCAGCTGCCAGCACATCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTCAAGCCCTCAAGGCCATACTTGTCAGCAGCTGCCAGCACATCA  748

seq1  CAGGCCATGGAGTGGCTATGGAGGGTTGGAGCCTTCCCAGTGTAGATGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCATGGAGTGGCTATGGAGGGTTGGAGCCTTCCCAGTGTAGATGAA  798

seq1  GTCCATCATCTCCTTAAAGACTTGAAAATCCAGCTCCTGGATCTCAAAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCATCTCCTTAAAGACTTGAAAATCCAGCTCCTGGATCTCAAAGC  848

seq1  AGTTTGCTAGTCTCTCCTCCATTTGATGTTCAAACATGGCTCTGAAAACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCTAGTCTCTCCTCCATTTGATGTTCAAACATGGCTCTGAAAACT  898

seq1  GGAGAGCGAGCTGCTAGGATGGCTTTGTGAGCCCTGAATTC  940
      |||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCGAGCTGCTAGGATGGCTTTGTGAGCCCTGAATTC  939