BAC Information

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BAC

Clone NameB6Ng01-083L22
Chromosome3 (Build37)13 (Build37)
Map Location 7,049,880 - 7,050,58482,135,665 - 82,136,707
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
Downstream geneEG667801, Pkia, LOC667807, 3110050N22Rik, Il7, LOC620822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083L22.bB6Ng01-083L22.g
ACCDH897919DH897920
length1,0001,038
definitionDH897919|Mus musculus domesticus DNA, BAC clone: B6Ng01-083L22, 5' end.DH897920|Mus musculus domesticus DNA, BAC clone: B6Ng01-083L22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(7,049,880 - 7,050,584)(82,135,665 - 82,136,707)
sequence
gaattcacgaagttgaatccttctcaacagtctgttttacgggaacactt
cattaccaccattccccagctgaacagttctgaattcacgcagttgaatc
cttctcaacagtctgttttacgggaacctttatgaccgtgacccgcagtt
ctggttctggaatgagggatcttccttgtgccagtgatggtaaccgtccc
aggttttctcgtcccgggatttctcgtcccaggtcttctcgtcccaggtc
ttctcgtcccagggcttctcgtcccaggtcttctcgtcccgggtcttctt
gtcccgtcccgggtctcagcaccaactcttacacgcattcatgcgaccgg
ccaggaagaacacaacaaaccgaatcttctgcggcaaaagctttattgct
tacatcttcaggagcaagagagcaagagtcagagcaagagaaagaaagaa
agcaagagtgcaagagcaagagcgcaagagccagagcaagagtgcaagaa
aaagaacaagaacaagaaagcaagagaaagaacaagaacaagaaagcaag
agagagaaaaagaatggcaaaaccccgtcccctttaaggagaattatcct
ccgcctaggacgtattactccctgattggctgcagcccatcggctcagtt
gtcatcacgagaaaggcagaacacatggcgggaaaactgcccctgcacgt
gtgcagattatgtttaccacttagaacacagctgtcagcgccatcttata
atggcaaatgtgagggcggctcccaacagtcaaatgctttctcagcatct
aatgagatgatcatgtgatttttgtctttgagtttgtttatatactggat
tgcattgatagatttccatatattgaactgtaaaggcattttctcaatta
gtgattctcaagtgctgggtttctcactcactaataggaaacagacttta
cataccctgatgcaaaagaaatccccccacaaagaaaagaaatcccttta

gtctcatcacctacaaccaacccttggtgattgctcctcttggtcctttt
cagtcttttgtgatagttgtgcaaatgtgtgtgaattaggtttccactgt
ggtcttgataatccttatttctaattactattgatgatagtgtttcaata
ttcttattggccatatgtacatattctttgaaaattcatattaaagtctt
gtttcatgtctttattgttttcttgttggctggaagttgaaccttggtct
ctgtgtacacaaagaaagcatcatttcattgagctatatatccttagggc
cccactcccccattttaaaattacattgcttagctttatgttgtcattgt
ttcaggtattacctatgcattttgcatattaatactttagtataactttt
acatttttctttcatttagtgggttactttgaactctgttgatactatta
tttgatattcaaattaacaatttgtccattttttgggactttgatgtcag
ttaaaaatactactatgaaatttattgtattaagtttcctacttcatata
ttttcgtccaagaattttgtagttctacaactcacaattagttctccgat
ccattttgcaataattagtttagttaaccagataataatatggtattcat
aagcatcaaacttctatttttttgattttagatatctagtttttctgatg
ccaattttctgaactattgcctttctgccttgaatgatgttggtagctga
ctattgctgtgaaggtttatttctggggtctctattccattttattggtc
cacatcacagtctttatatcaggttagtgttctgtttggaatcacttcaa
ttctaactgatcatatcattctctttgttctgattgtttaactcttgctt
ttgagtttctattacacagcattcattgacttcttgatattcccaaccat
acttgtctttcattatctttgtgatactttttataactttccaatattct
ctggtcttatctgttctgggatctcgtatctatctatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_7049880_7050584
seq2: B6Ng01-083L22.b_46_823 (reverse)

seq1  TGTTGGGAGCCGCCCTCACATTTGCCATTATAAGATGGCGCTGACAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGAGCCGCCCTCACATTTGCCATTATAAGATGGCGCTGACAGCTG  50

seq1  TGTTCTAAGTGGTAAACATAATCTGCACACGTGCAGGGGCAGTTTTCCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAAGTGGTAAACATAATCTGCACACGTGCAGGGGCAGTTTTCCCG  100

seq1  CCATGTGTTCTGCCTTTCTCGTGATGACAACTGGGCCGATGGGCTGCAGC  150
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCATGTGTTCTGCCTTTCTCGTGATGACAACTGAGCCGATGGGCTGCAGC  150

seq1  CAATCAGGGAGTAATACGTCCTAGGCGGAGGATAATTCTCCTTAAAAGGG  200
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAATCAGGGAGTAATACGTCCTAGGCGGAGGATAATTCTCCTTAAAGGGG  200

seq1  ACGGGGTTTTGCCATTCTT------TCTCTTGTTTTCTCACTCCTG----  240
      |||||||||||||||||||      ||||||| |||||   || ||    
seq2  ACGGGGTTTTGCCATTCTTTTTCTCTCTCTTGCTTTCTTGTTCTTGTTCT  250

seq1  CTCTCTTGCTTTCTTGTTCTTGTTCTTTTTCTTGCTTTCTTGCTCT----  286
       ||||||||||||||||||||||||||||||||||  |||||||||    
seq2  TTCTCTTGCTTTCTTGTTCTTGTTCTTTTTCTTGCACTCTTGCTCTGGCT  300

seq1  ------------CTCTTGCTCTCTTGC----------TCTCTTGCT----  310
                  ||||||| |||||||          |||||||||    
seq2  CTTGCGCTCTTGCTCTTGCACTCTTGCTTTCTTTCTTTCTCTTGCTCTGA  350

seq1  GTCTTGCTTTCTTGCTCCTGAAGATGTAAGCAATAAAGCTTTTGCCGCAG  360
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCTCTCTTGCTCCTGAAGATGTAAGCAATAAAGCTTTTGCCGCAG  400

seq1  AAGATTCCGGTTTGTTGTGTTCTTCCTGGCCGGTCGCGAGAATGCGTGTA  410
      |||||| ||||||||||||||||||||||||||||||  |||||||||||
seq2  AAGATT-CGGTTTGTTGTGTTCTTCCTGGCCGGTCGCATGAATGCGTGTA  449

seq1  AGAGTTGGTGCTG--------------------AGACCCGGGACGAGAAG  440
      |||||||||||||                    |||||||||||||||||
seq2  AGAGTTGGTGCTGAGACCCGGGACGGGACAAGAAGACCCGGGACGAGAAG  499

seq1  ACCTGGGACGAGAAAACCCGGGACGAGAAGACCTGGGACGAGAAAACCCG  490
      ||||||||||||||  || ||||||||||||||||||||||||| ||| |
seq2  ACCTGGGACGAGAAGCCCTGGGACGAGAAGACCTGGGACGAGAAGACCTG  549

seq1  GGACAAGA--------------AAAACCTGGGACGGTTACCATCACCGGC  526
      |||| |||              |||||||||||||||||||||||| |||
seq2  GGACGAGAAATCCCGGGACGAGAAAACCTGGGACGGTTACCATCACTGGC  599

seq1  GCAAGGAAGATTCCTCATTCCGGAACCAGAACTGCGGGTCATGGTCATAA  576
       |||||||||| ||||||||| ||||||||||||||||||| ||||||||
seq2  ACAAGGAAGATCCCTCATTCCAGAACCAGAACTGCGGGTCACGGTCATAA  649

seq1  AGGTTCCCGTAAAACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCAG  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCCGTAAAACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCAG  699

seq1  AACTCTTCAGCTGGGGAATGGTGGTAATGAAGTGTTCCCGTAAAACAGAC  676
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTCAGCTGGGGAATGGTGGTAATGAAGTGTTCCCGTAAAACAGAC  749

seq1  TGTTGAGAAGGATTCAACTGCGTGAATTC  705
      ||||||||||||||||||| |||||||||
seq2  TGTTGAGAAGGATTCAACTTCGTGAATTC  778

seq1: chr13_82135665_82136707
seq2: B6Ng01-083L22.g_75_1112

seq1  GTCTCATCACCTACAACCAACCCTTGGTGATTGCTCCTCTTGGTCCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATCACCTACAACCAACCCTTGGTGATTGCTCCTCTTGGTCCTTTT  50

seq1  CAGTCTTTTGTGATAGTTGTGCAAATGTGTGTGAATTAGGTTTCCACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTTGTGATAGTTGTGCAAATGTGTGTGAATTAGGTTTCCACTGT  100

seq1  GGTCTTGATAATCCTTATTTCTAATTACTATTGATGATAGTGTTTCAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGATAATCCTTATTTCTAATTACTATTGATGATAGTGTTTCAATA  150

seq1  TTCTTATTGGCCATATGTACATATTCTTTGAAAATTCATATTAAAGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTGGCCATATGTACATATTCTTTGAAAATTCATATTAAAGTCTT  200

seq1  GTTTCATGTCTTTATTGTTTTCTTGTTGGCTGGAAGTTGAACCTTGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATGTCTTTATTGTTTTCTTGTTGGCTGGAAGTTGAACCTTGGTCT  250

seq1  CTGTGTACACAAAGAAAGCATCATTTCATTGAGCTATATATCCTTAGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTACACAAAGAAAGCATCATTTCATTGAGCTATATATCCTTAGGGC  300

seq1  CCCACTCCCCCATTTTAAAATTACATTGCTTAGCTTTATGTTGTCATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCCCCCATTTTAAAATTACATTGCTTAGCTTTATGTTGTCATTGT  350

seq1  TTCAGGTATTACCTATGCATTTTGCATATTAATACTTTAGTATAACTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTATTACCTATGCATTTTGCATATTAATACTTTAGTATAACTTTT  400

seq1  ACATTTTTCTTTCATTTAGTGGGTTACTTTGAACTCTGTTGATACTATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTCTTTCATTTAGTGGGTTACTTTGAACTCTGTTGATACTATTA  450

seq1  TTTGATATTCAAATTAACAATTTGTCCATTTTTTGGGACTTTGATGTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATATTCAAATTAACAATTTGTCCATTTTTTGGGACTTTGATGTCAG  500

seq1  TTAAAAATACTACTATGAAATTTATTGTATTAAGTTTCCTACTTCATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATACTACTATGAAATTTATTGTATTAAGTTTCCTACTTCATATA  550

seq1  TTTTCGTCCAAGAATTTTGTAGTTCTACAACTCACAATTAGTTCTCCGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGTCCAAGAATTTTGTAGTTCTACAACTCACAATTAGTTCTCCGAT  600

seq1  CCATTTTGCAATAATTAGTTTAGTTAACCAGATAATAATATGGTATTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGCAATAATTAGTTTAGTTAACCAGATAATAATATGGTATTCAT  650

seq1  AAGCATCAAACTTCTATTTTTTTGATTTTAGATATCTAGTTTTTCTGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCAAACTTCTATTTTTTTGATTTTAGATATCTAGTTTTTCTGATG  700

seq1  CCAATTTTCTGAACTATTGCCTTTCTGCCTTGAATGATGTTGGTAGCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTTCTGAACTATTGCCTTTCTGCCTTGAATGATGTTGGTAGCTGA  750

seq1  CTATTGCTGTGAAGGTTTATTTCTGGGGTCTCTATTCCATTTTATTGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCTGTGAAGGTTTATTTCTGGGGTCTCTATTCCATTTTATTGGTC  800

seq1  CACATCACAGTCTTTATATCAGGTTAGTGTTCTGTTTGGAATCACTTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCACAGTCTTTATATCAGGTTAGTGTTCTGTTTGGAATCACTTCAA  850

seq1  TTCTAACTGATCATATCATTCTCTTTGTTCTGATTGTTTAACTCTTGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACTGATCATATCATTCTCTTTGTTCTGATTGTTTAACTCTTGCTT  900

seq1  TTGAGTTTCTATTACACAGCATTCATTGAACTTCTTGGATATTCCCAACC  950
      |||||||||||||||||||||||||||| ||||||| |||||||||||||
seq2  TTGAGTTTCTATTACACAGCATTCATTG-ACTTCTT-GATATTCCCAACC  948

seq1  ATACTTGTCTTTCATTATCTTTGTGATACTTTTTATAACTTTCCAATATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGTCTTTCATTATCTTTGTGATACTTTTTATAACTTTCCAATATT  998

seq1  CTCTGTTCTTTATCTGTTCTGGGATTCTCGTAATCTATCTATC  1043
      ||||| || ||||||||||||||| |||||| |||||||||||
seq2  CTCTGGTC-TTATCTGTTCTGGGA-TCTCGT-ATCTATCTATC  1038