BAC Information

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BAC

Clone NameB6Ng01-084M24
Chromosome3 (Build37)
Map Location 51,441,012 - 51,579,775
singlet/doubletdoublet
Overlap geneMgst2, Maml3
Upstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684
Downstream geneLOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084M24.bB6Ng01-084M24.g
ACCDH898656DH898657
length1,1341,006
definitionDH898656|Mus musculus domesticus DNA, BAC clone: B6Ng01-084M24, 5' end.DH898657|Mus musculus domesticus DNA, BAC clone: B6Ng01-084M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,578,633 - 51,579,775)(51,441,012 - 51,442,009)
sequence
gaattctgagtcaacggagtgctgcggcacctgcttgtgatcccagaaca
ctggaagcagaggccagaggctcacgagttcaagtccattctgggttata
gtttaagactgaatctcaaaaaaagccgaacaagaaaaagaattgtggtc
gatgcttagttgttcctcagtaggctgtcctctcatcataaccagtgcct
ggcattcacaaaagacagatgtttctccttaaaatcttatgtactacaaa
tgcatatgctttgtcaacggtttagtatttaatctgttccttaattttaa
ctttttagtgggcagttttcttttttatgtattgccttctttgtttgtaa
tttcaagatatttaatgcctataaagaacttccttcctaccaaaatattt
aaatattgggctttctaaatgtttaaggaagttcatttttacagccatta
tatgattttcaaaaatgtatgtaggtgggctgtcaagcagggcaacctga
ctgagttcagtccccagaacccacatgatggaagaacagagctgactctc
agaggttgtcgtctgacttatacatcatatccacgtgtactcgtgcgtct
gtgcgctcacagacacaaataataagtaaataaatgtttctaccatgtac
gttggtctaagtgggaggctgaaaacttcctttgctagtagcccctcctg
tccccatccttcctagcagatgacaacctcagacaccttttctctcactg
agctgtggattctttctccctccgacccgcacagcttcctgtcctcatta
cgcgtgggtaggtcgagcacatcgtgtcactcctcgctggctccctgagc
tcctcctccagttgatagtttttaatataactataaaaaacattttcatt
taaatccctttgggatcccgagaactcgcgcagatctctgtaagttcaaa
ggcagccttgtctacatagtgagtcccaggacagtcaggctatagagaga
gacttcgtttcaaaaataaacaactaataaacaacaacaacccctctggg
atgtggttgagttacaataatattacgagtacttggactgaaccgtactt
tgataggcagtgttctttccactaatgaactctg
gaattccccacatagctggtgactgagcacggagcaccaattggaggtga
gatagctcaaggaacgggcctttgcctagtgagcctttgtgagtaagaaa
gaaattcatcttggaacagtcagtctagatgtagttttaccactgatgaa
agatcaagcaactttgcatactgagaaagatgtctatcacagtcctaacg
tgctgcctccctgctgaggaaaggcggtaggtaaacactagtattgaaag
gctgctctctgcaatggaaccactacagttttataaagacgagcaggttt
atattcacactgcaattaataacatacaatgaacttgaatctgaactgag
atgtttcggcagtggtccacggtgtgctgtgtgattacatgcacagtgtg
tggagcatgctgtgtgttggcagccaatgatgggtcggaagtcacatgat
gtaacactggtgtgtcctccctgaaatacctcagattcattacaattttt
tattttgaattatggaattatattttggttgttgcttgtccagagacctt
ttttttctgttgccattttttttgcaagtctatgttcagttataacctgt
ggttttaagaagcgtcatcctagacccggtacccctttggttctgcccag
tgaatggctgcatccacagctgaaaggagagaatgaatgactaccccaga
agtttttaggcgagtatcataaatgctaagtttgtgacagagagctcttc
ttccttctccacggtccagagtttgaggtgtgatgatccccctgcctctg
ttccccaagtgctgggatgaggcaaaaaaactcacacatctcattgaggc
agtgctgggagatcaaagacaaggtttcatgttatgacgggccaacattt
caactcagctgaactacattctcagctcccaacaagtagtaagcttaata
agatacgagcagagaaggacattgtcaaatgcgtgggaagagtttggggt
tgcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_51578633_51579775
seq2: B6Ng01-084M24.b_46_1179 (reverse)

seq1  CAGAGTTCATTGTGAGTGGGAAG-ACACTGCTATACCAAAGGTACCGTTC  49
      |||||||||||   ||||| ||| |||||||  || |||| |||| ||||
seq2  CAGAGTTCATT---AGTGGAAAGAACACTGC-CTATCAAA-GTACGGTTC  45

seq1  AGTCCAAAGTACTCTGTATATTTATTGTAACTCAAACCAACATCCCAGAG  99
      ||||| |||||||| |||   ||||||||||||||  | |||||||||||
seq2  AGTCC-AAGTACTC-GTAATATTATTGTAACTCAA--CCACATCCCAGAG  91

seq1  GGGTTTGTTTGTTTGTTTATTAGTTGTTTATTTTTTGAAACGAAGTCTCT  149
      ||| |||||   |||||||||||||||||| |||||||||||||||||||
seq2  GGG-TTGTT--GTTGTTTATTAGTTGTTTA-TTTTTGAAACGAAGTCTCT  137

seq1  CTCTATAGCCCTGACTGTCCTGGGACTCACTATGTAGACCAGGCTGCCTT  199
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  CTCTATAG-CCTGACTGTCCTGGGACTCACTATGTAGACAAGGCTGCCTT  186

seq1  TGAACTTACAGAGATCTGCGCGAGTTCTC-GGATCCCAGAGGGATTT-AA  247
      ||||||||||||||||||||||||||||| |||||||| |||||||| ||
seq2  TGAACTTACAGAGATCTGCGCGAGTTCTCGGGATCCCAAAGGGATTTAAA  236

seq1  TG-AAATGTTTTTTATAGTTATATT-AAAACTATCAACTGGAGGAGGAGC  295
      || |||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGAAAATGTTTTTTATAGTTATATTAAAAACTATCAACTGGAGGAGGAGC  286

seq1  TCAGGGAGCCAGCGAGGAGTGACACGATGTGCTCGACCTACCCACGCGTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAGCCAGCGAGGAGTGACACGATGTGCTCGACCTACCCACGCGTA  336

seq1  ATGAGGACAGGAAGCTGTGCGGGTCGGAGGGAGAAAGAATCCACAGCTCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGACAGGAAGCTGTGCGGGTCGGAGGGAGAAAGAATCCACAGCTCA  386

seq1  GTGAGAGAAAAGGTGTCTGAGGTTGTCATCTGCTAGGAAGGATGGGGACA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAAAAGGTGTCTGAGGTTGTCATCTGCTAGGAAGGATGGGGACA  436

seq1  GGAGGGGCTACTAGCAAAGGAAGTTTTCAGCCTCCCACTTAGACCAACGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGCTACTAGCAAAGGAAGTTTTCAGCCTCCCACTTAGACCAACGT  486

seq1  ACATGGTAGAAACATTTATTTACTTATTATTTGTGTCTGTGAGCGCACAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTAGAAACATTTATTTACTTATTATTTGTGTCTGTGAGCGCACAG  536

seq1  ACGCACGAGTACACGTGGATATGATGTATAAGTCAGACGACAACCTCTGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCACGAGTACACGTGGATATGATGTATAAGTCAGACGACAACCTCTGA  586

seq1  GAGTCAGCTCTGTTCTTCCATCATGTGGGTTCTGGGGACTGAACTCAGTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGCTCTGTTCTTCCATCATGTGGGTTCTGGGGACTGAACTCAGTC  636

seq1  AGGTTGCCCTGCTTGACAGCCCACCTACATACATTTTTGAAAATCATATA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCCCTGCTTGACAGCCCACCTACATACATTTTTGAAAATCATATA  686

seq1  ATGGCTGTAAAAATGAACTTCCTTAAACATTTAGAAAGCCCAATATTTAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGTAAAAATGAACTTCCTTAAACATTTAGAAAGCCCAATATTTAA  736

seq1  ATATTTTGGTAGGAAGGAAGTTCTTTATAGGCATTAAATATCTTGAAATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGGTAGGAAGGAAGTTCTTTATAGGCATTAAATATCTTGAAATT  786

seq1  ACAAACAAAGAAGGCAATACATAAAAAAGAAAACTGCCCACTAAAAAGTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAGAAGGCAATACATAAAAAAGAAAACTGCCCACTAAAAAGTT  836

seq1  AAAATTAAGGAACAGATTAAATACTAAACCGTTGACAAAGCATATGCATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAGGAACAGATTAAATACTAAACCGTTGACAAAGCATATGCATT  886

seq1  TGTAGTACATAAGATTTTAAGGAGAAACATCTGTCTTTTGTGAATGCCAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTACATAAGATTTTAAGGAGAAACATCTGTCTTTTGTGAATGCCAG  936

seq1  GCACTGGTTATGATGAGAGGACAGCCTACTGAGGAACAACTAAGCATCGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGTTATGATGAGAGGACAGCCTACTGAGGAACAACTAAGCATCGA  986

seq1  CCACAATTCTTTTTCTTGTTCGGCTTTTTTTGAGATTCAGTCTTAAACTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATTCTTTTTCTTGTTCGGCTTTTTTTGAGATTCAGTCTTAAACTA  1036

seq1  TAACCCAGAATGGACTTGAACTCGTGAGCCTCTGGCCTCTGCTTCCAGTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCAGAATGGACTTGAACTCGTGAGCCTCTGGCCTCTGCTTCCAGTG  1086

seq1  TTCTGGGATCACAAGCAGGTGCCGCAGCACTCCGTTGACTCAGAATTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGATCACAAGCAGGTGCCGCAGCACTCCGTTGACTCAGAATTC  1134

seq1: chr3_51441012_51442009
seq2: B6Ng01-084M24.g_70_1075

seq1  GAATTCCCCACATAGCTGGTGACTGAGCACGGAGCACCAATTGGAGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCACATAGCTGGTGACTGAGCACGGAGCACCAATTGGAGGTGA  50

seq1  GATAGCTCAAGGAACGGGCCTTTGCCTAGTGAGCCTTTGTGAGTAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCTCAAGGAACGGGCCTTTGCCTAGTGAGCCTTTGTGAGTAAGAAA  100

seq1  GAAATTCATCTTGGAACAGTCAGTCTAGATGTAGTTTTACCACTGATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCATCTTGGAACAGTCAGTCTAGATGTAGTTTTACCACTGATGAA  150

seq1  AGATCAAGCAACTTTGCATACTGAGAAAGATGTCTATCACAGTCCTAACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAGCAACTTTGCATACTGAGAAAGATGTCTATCACAGTCCTAACG  200

seq1  TGCTGCCTCCCTGCTGAGGAAAGGCGGTAGGTAAACACTAGTATTGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCTCCCTGCTGAGGAAAGGCGGTAGGTAAACACTAGTATTGAAAG  250

seq1  GCTGCTCTCTGCAATGGAACCACTACAGTTTTATAAAGACGAGCAGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCTCTGCAATGGAACCACTACAGTTTTATAAAGACGAGCAGGTTT  300

seq1  ATATTCACACTGCAATTAATAACATACAATGAACTTGAATCTGAACTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCACACTGCAATTAATAACATACAATGAACTTGAATCTGAACTGAG  350

seq1  ATGTTTCGGCAGTGGTCCACGGTGTGCTGTGTGATTACATGCACAGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCGGCAGTGGTCCACGGTGTGCTGTGTGATTACATGCACAGTGTG  400

seq1  TGGAGCATGCTGTGTGTTGGCAGCCAATGATGGGTCGGAAGTCACATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCATGCTGTGTGTTGGCAGCCAATGATGGGTCGGAAGTCACATGAT  450

seq1  GTAACACTGGTGTGTCCTCCCTGAAATACCTCAGATTCATTACAATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACACTGGTGTGTCCTCCCTGAAATACCTCAGATTCATTACAATTTTT  500

seq1  TATTTTGAATTATGGAATTATATTTTGGTTGTTGCTTGTCCAGAGACC-T  549
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TATTTTGAATTATGGAATTATATTTTGGTTGTTGCTTGTCCAGAGACCTT  550

seq1  TTTTTTCTGTTGCCATTTTTTTTGCAAGTCTATGTTCAGTTATAACCTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTGTTGCCATTTTTTTTGCAAGTCTATGTTCAGTTATAACCTGT  600

seq1  GG-TTTAAGAAGCGTCATCCTAGACCCGGTACCCCTTTGGTTCTGCCCAG  648
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTAAGAAGCGTCATCCTAGACCCGGTACCCCTTTGGTTCTGCCCAG  650

seq1  TGAATGGCTGCATCCACAGCTG-AAGGAGAGAATGAATGACTACCCCAGA  697
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGAATGGCTGCATCCACAGCTGAAAGGAGAGAATGAATGACTACCCCAGA  700

seq1  AGTTTTTAGGCGAGTATCATAAATGCTAAGTTTGTGACAGAGAGCTCTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTAGGCGAGTATCATAAATGCTAAGTTTGTGACAGAGAGCTCTTC  750

seq1  TTCCTTCTCCACGGTCCAGAGTTTGAGGTGTGATGATCCCCCTGCCTCTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTCCACGGTCCAGAGTTTGAGGTGTGATGATCCCCCTGCCTCTG  800

seq1  TTCCCCAAGTGCTGGGATGAGGCAAAAAAACTCACACATCTCATTGAGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAAGTGCTGGGATGAGGCAAAAAAACTCACACATCTCATTGAGGC  850

seq1  AGTGCT-GGAGATCAAAGACAAGGTTTCATG-TATGACGGGCCAACA-TT  894
      |||||| |||||||||||||||||||||||| ||||||||||||||| ||
seq2  AGTGCTGGGAGATCAAAGACAAGGTTTCATGTTATGACGGGCCAACATTT  900

seq1  CAAC-CAGCTGAACTACATCCTCAGC-CCCAACCAGTAGT-AGCTTAATA  941
      |||| |||||||||||||| |||||| |||||| |||||| |||||||||
seq2  CAACTCAGCTGAACTACATTCTCAGCTCCCAACAAGTAGTAAGCTTAATA  950

seq1  AGATACGAGCAGAGAAGGACATTGTTCAAATGCGTGGGAAGAGTTTTGGG  991
      |||||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  AGATACGAGCAGAGAAGGACATTG-TCAAATGCGTGGGAAGAGTTTGGGG  999

seq1  TTGCCCC  998
      |||||||
seq2  TTGCCCC  1006