BAC Information

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BAC

Clone NameB6Ng01-084P04
Chromosome13 (Build37)3 (Build37)
Map Location 28,104,753 - 28,105,356126,606,192 - 126,606,381
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePrl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036
Downstream genePrl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084P04.bB6Ng01-084P04.g
ACCDH898756DH898757
length1,051963
definitionDH898756|Mus musculus domesticus DNA, BAC clone: B6Ng01-084P04, 5' end.DH898757|Mus musculus domesticus DNA, BAC clone: B6Ng01-084P04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(28,104,753 - 28,105,356)(126,606,192 - 126,606,381)
sequence
gaattcaccttttatggtagcaaaatgatagaagcagtctaggtgaccat
caaagaagaatgtcctgaagaaagataattgtgtgaagctgtggatgtgc
acctcagttgcaaaggagaccccacaacagtagagattacaggaccatgg
agagagactatggatatggaggtaagctggcctaagacagtgactatgaa
tattgcaagcagcagaggtggataggaagagctccccaaactcttcagaa
ttcaaatgatttttatcagtttatcagttactaaccctggaactgtagta
ttatccaatttgttctctgacttgatcaattcttgctataccactatagc
ttttttttgaagaggaatgtgtcttctgtgttgttctatatttattttat
tttactttattttattttattttattttattttattttattttattttgt
agtttcttacagttaaaggatagcattgcgattcataacagtgttgagag
tgttgaaatctatgaaggttataatggatggactgaaaacaatttatata
agatagttataagcagtaagaagaaaggatggaaagtcatgtagatttat
gtcaagttgatagtggctagagctgtaatagtacttgattgtcaacatga
cagaaatctctaataattttggagacagacctcaaagcatgtctgtgagt
agaattctagacagggttacccgaggtgggaagactaatgctaaatgtta
gtggcattattccaaggactagaacccaacaccaaattaaaaggagaagg
caaatggaactaaaatatttgccatcatttcctttctaggtgttaatgca
atgtgaccagctactgcacattacctgtgagggtgaaaatctccacacat
actcccaaagaaacatgttcctttacccatttttgagtgatagatagagt
ctgtatcagctaagagatcttcaccctggcaataccctgtcattctctga
gaaggatggagggagggaaggacaaagaaagggagggagggagaaagagg
g
gaattctaagccaggcatggtggcgcacgcctgtaatcccagcactcggg
aggcagaggcaggcggatttctgagttcgaggccagcctggtctacaaag
tgagttctaggacagacggggctatacagagaaaccctgtgtcgaaaaac
taagaaagaaagcaagcaagcaagcaagcaagcaagcaagcaagcaagaa
agaaagagagagagagagagagaattttaaacttacgttgctaagcttgc
cctgagatttctaactctatgtagtagatagtaatgcctgattcctttca
ctgtctctcttacaatactagaagcaattctgaatgttactgaataggca
acattcttactgaattccaagcccaggatcggctcaaggacaacctaggg
cattggtgaaggccaggaagcaaagttcaattttgcttaggtatttggca
agttattgcttggagacacctataataaaacaatactgaaagaaagcaca
cagatccattcgcaaggacaagtttggagcattcattatacggaatgcca
tggttccaggaggctaagtttccgtaaacttttcacctcaggactgaatt
accctgcaaagaagaaatagattttgcagtgggactgagggcaggtggag
gtaggaacagtaaggatgaggttgaagttagagggagagatgaaaagtac
cgggagagatctgtggaaacctattttagtagaaatttccttgaacctgt
gtgagtgactctagaaaggactcctagttatggaagatatggaacctgag
cagtccatcttctgtaaccaggcaaggctttcagtggtgtgacatggata
ctaactcagttacaaacctttgacttaaaacctgtccttcatgcaagatg
tactagggcaatggtggctcagagattttgggaagtgtacaacaaataat
aggtctaacttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_28104753_28105356
seq2: B6Ng01-084P04.b_499_1101 (reverse)

seq1  CCCTCTTTCTCCCTCCCTCCCTTTCTTTGTCCTTCCCTCCCTCCATCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTTCTCCCTCCCTCCCTTTCTTTGTCCTTCCCTCCCTCCATCCTT  50

seq1  CTCAGAGAATGACAGGGTATTTGCCAGGGTGAAGATCTCTTAGCTGATAC  100
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTCAGAGAATGACAGGGTA-TTGCCAGGGTGAAGATCTCTTAGCTGATAC  99

seq1  AGACTCTATCTATCACTCAAAAATGGGTAAAGGAACATGTTTCTTTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTATCTATCACTCAAAAATGGGTAAAGGAACATGTTTCTTTGGGA  149

seq1  GTATGTGTGGAGATTTTCACCCTCACAGGTAATGTGCAGTAGCTGGTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTGGAGATTTTCACCCTCACAGGTAATGTGCAGTAGCTGGTCAC  199

seq1  ATTGCATTAACACCTAGAAAGGAAATGATGGCAAATATTTTAGTTCCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATTAACACCTAGAAAGGAAATGATGGCAAATATTTTAGTTCCATT  249

seq1  TGCCTTCTCCTTTTAATTTGGTGTTGGGTTCTAGTCCTTGGAATAATGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTCCTTTTAATTTGGTGTTGGGTTCTAGTCCTTGGAATAATGCC  299

seq1  ACTAACATTTAGCATTAGTCTTCCCACCTCGGGTAACCCTGTCTAGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACATTTAGCATTAGTCTTCCCACCTCGGGTAACCCTGTCTAGAATT  349

seq1  CTACTCACAGACATGCTTTGAGGTCTGTCTCCAAAATTATTAGAGATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCACAGACATGCTTTGAGGTCTGTCTCCAAAATTATTAGAGATTTC  399

seq1  TGTCATGTTGACAATCAAGTACTATTACAGCTCTAGCCACTATCAACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGTTGACAATCAAGTACTATTACAGCTCTAGCCACTATCAACTTG  449

seq1  ACATAAATCTACATGACTTTCCATCCTTTCTTCTTACTGCTTATAACTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATCTACATGACTTTCCATCCTTTCTTCTTACTGCTTATAACTAT  499

seq1  CTTATATAAATTGTTTTCAGTCCATCCATTATAACCTTCATAGATTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATAAATTGTTTTCAGTCCATCCATTATAACCTTCATAGATTTCAA  549

seq1  CACTCTCAACACTGTTATGAATCGCAATGCTATCCTTTAACTGTAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCAACACTGTTATGAATCGCAATGCTATCCTTTAACTGTAAGAAA  599

seq1  CTAC  604
      ||||
seq2  CTAC  603

seq1: chr3_126606192_126606381
seq2: B6Ng01-084P04.g_74_292

seq1  TAAGCCAGGCGTGGTGGCGCACGCTTTTAATCCCAGCACTCGGGAGGCAG  50
      |||||||||| ||||||||||||| | |||||||||||||||||||||||
seq2  TAAGCCAGGCATGGTGGCGCACGCCTGTAATCCCAGCACTCGGGAGGCAG  50

seq1  AGGCA----GATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTT  96
      |||||    |||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTT  100

seq1  CCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAA  146
      | ||||||| | |||||| ||||||||||||||| ||||||||| || ||
seq2  CTAGGACAGACGGGGCTATACAGAGAAACCCTGTGTCGAAAAACTAAGAA  150

seq1  AAAAA-------------------------AAAAAAAAAAAAAAAAAAAG  171
      | |||                          ||  ||  || ||| ||||
seq2  AGAAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGAAAGAAAG  200

seq1  AGAGAGAGAGAGAGAGAAT  190
      |||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAAT  219