BAC Information

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BAC

Clone NameB6Ng01-086M04
Chromosome3 (Build37)
Map Location 66,975,760 - 66,976,894
singlet/doubletsinglet
Overlap geneRsrc1
Upstream geneVeph1, Ptx3, LOC625115, Shox2
Downstream geneMlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412, EG208426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086M04.bB6Ng01-086M04.g
ACCDH900071DH900072
length1,1301,228
definitionDH900071|Mus musculus domesticus DNA, BAC clone: B6Ng01-086M04, 5' end.DH900072|Mus musculus domesticus DNA, BAC clone: B6Ng01-086M04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgtgtcccgggatcctgctggttactcccagtggtgttgaaac
agatgttgtgtcctactcacccctgatcctaagatcctgggtgagaagcc
ttctctgggtgctatgaaactggctgcagagtttgcaaccaaggtaaatt
cgtgcagcccaaaagccctcaagtcttctaagcctggtttcttatatagg
gaaggaccaccaacccaggactggtaccacccgcaatcgaattggccctg
ccacatcaattactaattaagaaaatgaaccacaggactgtctcaagaca
atttgattgaggcattttcttacttagggttccctcttctcaaatgattc
tagcttgtgtcaagctgacataaaactattcagtacacaccccatcacca
agtcacacaaagggaacaggattgccaccagggagggttatctgggatag
aaagtttgtgaaataaatgggagtggggaaatttctgggtgcgtatggag
tgagttgttttattttgttgttttcttttttattaatgtttttaaagaag
atggaaacgtttgaaggtagactaaaacagttaagtctcaccacttacac
tttcatattaccctggactaatctgccaggaacaatgacaattctccaat
aacattaaggaaaaagaaatttctacaatgtgttattaacatgactgaaa
aatacaaagtaattcagaaaagtttcacaaaagtattttaaaacaacaca
actcagaaataaaaaatttaaagactaattatgcttacattcccagtctg
gcacaaattttatacataaaactctccccacaaaaagcacagacagctgg
gcgtggtggtgcacacctttaatcccagctcttgtggggcagaggcaggc
agatttctgagttcaaggccagcctggttacagagtgagttccaggacag
ccggggtacacagagaaaccctgtctcaaaaacaaaacaaacaaacaaaa
aaagcacagacacgtgacacaaacttatataaatatgtatctggttctag
aagcagaatacctaaatttgaattcaatctcctaaaataaatccatacaa
gcctaagtgattttacaccacctctgctga
gaattcagaacttttcagctggggaacgagagtaccaaatgaagacaacc
cattttggttaccagaaagactcacccgaaaaatccagactgaccaaggg
aatactaatgtccctcgtcttggtgatgtccagggcgtcaataataaaga
gagagcagcgttgggggataatgtcgacatttccactcccaatgacggtg
atgtataatgctcaagtattctcctgcttttttaccactaactaggaact
gggtttggccttaattcagacagccttggctctgtctggacaggtccaga
tgactgacaccattaacactttgtcagcctcagtgactacagtcatagat
gaacaggcctcagctaatgtcaagatacagagaggtctcatgctggttaa
tcaactcatagatcttgtccagatacaactagatgtattatgacaaataa
ctcagcagggatgtgaacaaaagtttccgggattgtgtgttatttccatt
cagtatgttaaatttactaggacagctaatttgtcaaaaagtctttttca
gtatatgttacagaattggatggctgaatttgaacagatccttcgggaat
tgagacttcaggtcaactccacgcgcttggacctgtccctgaccaaagga
ttacccaattggatctcctcagcattttctttctttaaaaaatgggtggg
attaatattatttggagatacactttgctgtggattagtgttgcttcttt
gattggtctgtaagcttaaggcctaaactaggagagacaaggtggttatt
gcccaggcgcttgcaggactagaacatggagctccccctgatatatggtt
atctatgcttaggcaataggtcgctggccactcagctcttatatcccacg
aggctagtctcattgcacgggatagagtgagtgtgcttcagcagcccgag
agagttgcaagctaagcactgcaatggaaagctctgcgcatatatgagcc
tattctaggagacatgtcatctttcatgagttcagtgtctagttccttcc
ccaggcaaacgacacgggaacagtcaagatgctctggttaagctgggcta
aagctattctgtacatgcttctttactaacactggatttgactttatctc
caccctcataatggtgcaattgtctctctgtataagaaagcggcaatttg
gactcgctcccacaatttcgcgttcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_66975760_66976894
seq2: B6Ng01-086M04.b_44_1173 (reverse)

seq1  TCAGCAGAGGT-GTGTAAAATCAC-TAAGCTTGTATGGATTTATTTTA-G  47
      ||||||||||| |||||||||||| || |||||||||||||||||||| |
seq2  TCAGCAGAGGTGGTGTAAAATCACTTAGGCTTGTATGGATTTATTTTAGG  50

seq1  AGATTGAATTCAAATTTAGGTATTCTGCTTCTAGAACCAAGATAACATAT  97
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  AGATTGAATTCAAATTTAGGTATTCTGCTTCTAGAACC-AGAT-ACATAT  98

seq1  TTATATATGTTTGTGTCACGTTGTCTGTGCTTTTTTTTGTTTGTTTGTTT  147
      ||||||| |||||||||||| ||||||||| |||||||||||||||||||
seq2  TTATATAAGTTTGTGTCACG-TGTCTGTGC-TTTTTTTGTTTGTTTGTTT  146

seq1  TTGTTTTTTGAGACAGGGTTTCTCTGTGTAACCCCGGCTGTCCTGGAACT  197
      |   ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  T--GTTTTTGAGACAGGGTTTCTCTGTGT-ACCCCGGCTGTCCTGGAACT  193

seq1  CACTCTGTAAACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGC  247
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGT-AACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGC  242

seq1  CCCACAAGAGCTGGGATTAAAGGTGTGCACCACCACGCCCAGCTGTCTGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAGAGCTGGGATTAAAGGTGTGCACCACCACGCCCAGCTGTCTGT  292

seq1  GCTTTTTGTGGGGAGAGTTTTATGTATAAAATTTGTGCCAGACTGGGAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTGTGGGGAGAGTTTTATGTATAAAATTTGTGCCAGACTGGGAAT  342

seq1  GTAAGCATAATTAGTCTTTAAATTTTTTATTTCTGAGTTGTGTTGTTTTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCATAATTAGTCTTTAAATTTTTTATTTCTGAGTTGTGTTGTTTTA  392

seq1  AAATACTTTTGTGAAACTTTTCTGAATTACTTTGTATTTTTCAGTCATGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTTTGTGAAACTTTTCTGAATTACTTTGTATTTTTCAGTCATGT  442

seq1  TAATAACACATTGTAGAAATTTCTTTTTCCTTAATGTTATTGGAGAATTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACACATTGTAGAAATTTCTTTTTCCTTAATGTTATTGGAGAATTG  492

seq1  TCATTGTTCCTGGCAGATTAGTCCAGGGTAATATGAAAGTGTAAGTGGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTCCTGGCAGATTAGTCCAGGGTAATATGAAAGTGTAAGTGGTG  542

seq1  AGACTTAACTGTTTTAGTCTACCTTCAAACGTTTCCATCTTCTTTAAAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAACTGTTTTAGTCTACCTTCAAACGTTTCCATCTTCTTTAAAAA  592

seq1  CATTAATAAAAAAGAAAACAACAAAATAAAACAACTCACTCCATACGCAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATAAAAAAGAAAACAACAAAATAAAACAACTCACTCCATACGCAC  642

seq1  CCAGAAATTTCCCCACTCCCATTTATTTCACAAACTTTCTATCCCAGATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATTTCCCCACTCCCATTTATTTCACAAACTTTCTATCCCAGATA  692

seq1  ACCCTCCCTGGTGGCAATCCTGTTCCCTTTGTGTGACTTGGTGATGGGGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCCTGGTGGCAATCCTGTTCCCTTTGTGTGACTTGGTGATGGGGT  742

seq1  GTGTACTGAATAGTTTTATGTCAGCTTGACACAAGCTAGAATCATTTGAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTGAATAGTTTTATGTCAGCTTGACACAAGCTAGAATCATTTGAG  792

seq1  AAGAGGGAACCCTAAGTAAGAAAATGCCTCAATCAAATTGTCTTGAGACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGAACCCTAAGTAAGAAAATGCCTCAATCAAATTGTCTTGAGACA  842

seq1  GTCCTGTGGTTCATTTTCTTAATTAGTAATTGATGTGGCAGGGCCAATTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTGGTTCATTTTCTTAATTAGTAATTGATGTGGCAGGGCCAATTC  892

seq1  GATTGCGGGTGGTACCAGTCCTGGGTTGGTGGTCCTTCCCTATATAAGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCGGGTGGTACCAGTCCTGGGTTGGTGGTCCTTCCCTATATAAGAA  942

seq1  ACCAGGCTTAGAAGACTTGAGGGCTTTTGGGCTGCACGAATTTACCTTGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTTAGAAGACTTGAGGGCTTTTGGGCTGCACGAATTTACCTTGG  992

seq1  TTGCAAACTCTGCAGCCAGTTTCATAGCACCCAGAGAAGGCTTCTCACCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAACTCTGCAGCCAGTTTCATAGCACCCAGAGAAGGCTTCTCACCC  1042

seq1  AGGATCTTAGGATCAGGGGTGAGTAGGACACAACATCTGTTTCAACACCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTTAGGATCAGGGGTGAGTAGGACACAACATCTGTTTCAACACCA  1092

seq1  CTGGGAGTAACCAGCAGGATCCCGGGACACAGGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGTAACCAGCAGGATCCCGGGACACAGGAATTC  1130