BAC Information

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BAC

Clone NameB6Ng01-088P02
Chromosome3 (Build37)14 (Build37)
Map Location 127,237,405 - 127,237,69559,309,521 - 59,310,635
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCamk2d, Ank2, LOC100043749, LOC100043361, LOC100043364
Downstream geneLarp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382, EG668828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088P02.bB6Ng01-088P02.g
ACCDH901657DH901658
length8051,111
definitionDH901657|Mus musculus domesticus DNA, BAC clone: B6Ng01-088P02, 5' end.DH901658|Mus musculus domesticus DNA, BAC clone: B6Ng01-088P02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(127,237,405 - 127,237,695)(59,309,521 - 59,310,635)
sequence
gaattccttttaccctaaggtagtgcctatcattaatggtaaggtgaatt
tcttggaagtagtatttctaatccaatgaactagtttgtgtctttttatt
ggttaattaagaccattgatattcagggttattattaaaagatgtgaatt
aattcctaattaataattaattttgttgtttttatgatgttttcttttga
tgaacattcctggtgatgttaatttcctgtgacctcttggtgtgtttgtt
cttctcttgagacttaactattacatcctcccagcatcttctgtagagct
tgattagtgctcatgaattctattaatctgttttatcatgcaagctttct
tcttcaattttaatagatagtttgctgattttactagtctgagttgaaag
gtgggatctctcagaacatggaacacacttttcaggcttgtctggcttta
agagttcccatggaataatcagcttgatcgggtgtgtgtgcttttacata
aactggctgtcctctcacgctgtttccagatcttttctctattagagttc
tctctctctctctctctctctctctctctctctctctctctctgtctctc
tgtgtgtgtcacacactgagagagaatgtctctctcactcactgtgtatg
tggatcgtgcgtacggacagtcatcaaactaaataaacaaacaaaaatcg
cgtgcgtgtgtgtgcgctcactgtgtgtgtgtgtagtgtgtgggcgtggg
agaaaaatcaaaacaaataatgtgtatgtgtgagagtgtgcgcgcgtgtg
tgtgc
gaattctatattggtagccacagactcaggacatttttttccaacttcaa
aaaagatctaattggtagctctgctctgaacaactgcccagcagtcacct
gagatggtgaaccactaagatgtaaaacccccaatggaaggaagaggtat
ggcatcccagcacagactgctgcacaggaaagtggatctgctctcagaga
cacaatgaggacagaaaacagagtgtgagtgtggacacacacgcacgcac
gcacgctataaaatataaacaaggaaactcttctttttaagctttggggt
aataaatgccctgttggctactgtcatttttagtattcactgtagccata
aagtcaacatgtctcagagaggaatggtccactgtgactcttgatgacag
gcagaagtacatagagataaaaatttatggcacagggcattaactcagcc
ttgtctttgacagtacgtctcatcccttgcaaactccttgtgtgacttgt
ggtgctaacaagcggtcagcggttcaatgcaccattaacttttatcttca
ggacattccccacatgaaactccaataagccccagcaatgtaacgcagta
aatttctcatgagtggggatcactaatatgtctctatagaaaacatcata
ttttttcacatatgaaaatggttaaactaaaaatttaatgactagatctg
gaaaagctcctttaggccagagaaaatgaatttaatctgtaatgtgattt
atagccatcagagcaccaaacctcactacccagccatcgctcacagtaaa
atgtgctatgatagtgcactccttggaatgatacccagctttgacctgca
ggtggtctttagtgatacctggctttgtctttccagtggtaattggtgat
atccagctaagccctataggtgatgtttggtgatgcttttttctatgggg
tggtgtcttgtatctgacactctttaaagacagaagactgcctacatcat
tcagctatcaaattgctgatgtatgactaaaagatggtcagaagtcatgc
ctttcaatcttagaattacgccaattctattctacatgaaaatatggtat
aataaatgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_127237405_127237695
seq2: B6Ng01-088P02.b_594_851

seq1  TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGT  50
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  --TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGT  48

seq1  GTGTGTGTGTGTGTGCGCGCGC-GCGCGCG-----CGCGCGCACATGCAT  94
       | | ||||||||| | | | | | | | |     | | | ||| |   |
seq2  CTCTCTGTGTGTGT-CACACACTGAGAGAGAATGTCTCTCTCAC-TCACT  96

seq1  GCGCAGGTGACTGCACGTGCATTCGTGCTCATGACAGTCCAGGTACCCTT  144
      | | | |||   |  ||||| | ||       |||||||     ||    
seq2  GTGTATGTG---GATCGTGCGTACG-------GACAGTCATCAAACTAAA  136

seq1  GGAAGCCAGAAGCATCGGGT-CTTCTTGAAGCTGGAGAAGCGCCTGCTGT  193
        ||   | ||  |||| || | | |    ||       | |  || |||
seq2  TAAACAAACAAAAATCGCGTGCGTGTGTGTGCGCTCACTGTGTGTG-TGT  185

seq1  ACAATCCTGACAGCCTGAGTGACCCCTCAAACCACGGTGGGTAGAGAGAA  243
        | |  ||   || || | ||    ||||| ||              ||
seq2  GTAGT-GTGTGGGCGTGGGAGAAAAATCAAAACA--------------AA  220

seq1  TAGATGGTGAAAAGTTGCCCTCTGA---TCTTCACATGCTCATGTGTGTG  290
      || || ||| |    ||   | |||   | | |    || | ||||||||
seq2  TA-AT-GTGTA----TG---TGTGAGAGTGTGC----GCGCGTGTGTGTG  257

seq1  C  291
      |
seq2  C  258

seq1: chr14_59309521_59310635
seq2: B6Ng01-088P02.g_66_1176 (reverse)

seq1  CCTCA-TTATTATACATTATTTTCATGTTAAGATAGAA-TGGCGTAATTC  48
      ||||| |||||||||  |||||||||| ||  |||||| |||||||||||
seq2  CCTCATTTATTATACCATATTTTCATG-TAGAATAGAATTGGCGTAATTC  49

seq1  TAAGAATGGAAAAGCATGACTTCTGACCATTCTTTTAGTCATACATCAGC  98
      |||| || |||| |||||||||||||||| ||||||||||||||||||||
seq2  TAAG-ATTGAAAGGCATGACTTCTGACCA-TCTTTTAGTCATACATCAGC  97

seq1  AATTTTGATAGCTGAATGATGTAGGCAGTCTTCTGTCTTTAAAAGAGTTG  148
      || ||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  AA-TTTGATAGCTGAATGATGTAGGCAGTCTTCTGTCTTT-AAAGAG-TG  144

seq1  TCAAGATACAAGACACCA-CCCATAGAAAAAAGCATCACCAAACATCACC  197
      || ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TC-AGATACAAGACACCACCCCATAGAAAAAAGCATCACCAAACATCACC  193

seq1  TATAGGGCTTAGCTGGATATCACCAAATACCACTGGAAAGACAAAGCCAG  247
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATAGGGCTTAGCTGGATATCACCAATTACCACTGGAAAGACAAAGCCAG  243

seq1  GTATCACTAAAGACCACCTGCAGGTCAAAGCTGGGTATCATTCCAAGGAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACTAAAGACCACCTGCAGGTCAAAGCTGGGTATCATTCCAAGGAG  293

seq1  TGCACTATCATAGCACATTTTACTGTGAGCGATGGCTGGGTAGTGAGGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTATCATAGCACATTTTACTGTGAGCGATGGCTGGGTAGTGAGGTT  343

seq1  TGGTGCTCTGATGGCTATAAATCACATTACAGATTAAATTCATTTTCTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTCTGATGGCTATAAATCACATTACAGATTAAATTCATTTTCTCT  393

seq1  GGCCTAAAGGAGCTTTTCCAGATCTAGTCATTAAATTTTTAGTTTAACCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAAAGGAGCTTTTCCAGATCTAGTCATTAAATTTTTAGTTTAACCA  443

seq1  TTTTCATATGTGAAAAAATATGATGTTTTCTATAGAGACATATTAGTGAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATATGTGAAAAAATATGATGTTTTCTATAGAGACATATTAGTGAT  493

seq1  CCCCACTCATGAGAAATTTACTGCGTTACATTGCTGGGGCTTATTGGAGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTCATGAGAAATTTACTGCGTTACATTGCTGGGGCTTATTGGAGT  543

seq1  TTCATGTGGGGAATGTCCTGAAGATAAAAGTTAATGGTGCATTGAACCGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGGGGAATGTCCTGAAGATAAAAGTTAATGGTGCATTGAACCGC  593

seq1  TGACCGCTTGTTAGCACCACAAGTCACACAAGGAGTTTGCAAGGGATGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCGCTTGTTAGCACCACAAGTCACACAAGGAGTTTGCAAGGGATGAG  643

seq1  ACGTACTGTCAAAGACAAGGCTGAGTTAATGCCCTGTGCCATAAATTTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTACTGTCAAAGACAAGGCTGAGTTAATGCCCTGTGCCATAAATTTTT  693

seq1  ATCTCTATGTACTTCTGCCTGTCATCAAGAGTCACAGTGGACCATTCCTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTATGTACTTCTGCCTGTCATCAAGAGTCACAGTGGACCATTCCTC  743

seq1  TCTGAGACATGTTGACTTTATGGCTACAGTGAATACTAAAAATGACAGTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGACATGTTGACTTTATGGCTACAGTGAATACTAAAAATGACAGTA  793

seq1  GCCAACAGGGCATTTATTACCCCAAAGCTTAAAAAGAAGAGTTTCCTTGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAGGGCATTTATTACCCCAAAGCTTAAAAAGAAGAGTTTCCTTGT  843

seq1  TTATATTTTATAGCGTGCGTGCGTGCGTGTGTGTCCACACTCACACTCTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTTATAGCGTGCGTGCGTGCGTGTGTGTCCACACTCACACTCTG  893

seq1  TTTTCTGTCCTCATTGTGTCTCTGAGAGCAGATCCACTTTCCTGTGCAGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTCCTCATTGTGTCTCTGAGAGCAGATCCACTTTCCTGTGCAGC  943

seq1  AGTCTGTGCTGGGATGCCATACCTCTTCCTTCCATTGGGGGTTTTACATC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTGCTGGGATGCCATACCTCTTCCTTCCATTGGGGGTTTTACATC  993

seq1  TTAGTGGTTCACCATCTCAGGTGACTGCTGGGCAGTTGTTCAGAGCAGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGTTCACCATCTCAGGTGACTGCTGGGCAGTTGTTCAGAGCAGAG  1043

seq1  CTACCAATTAGATCTTTTTTGAAGTTGGAAAAAAATGTCCTGAGTCTGTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAATTAGATCTTTTTTGAAGTTGGAAAAAAATGTCCTGAGTCTGTG  1093

seq1  GCTACCAATATAGAATTC  1115
      ||||||||||||||||||
seq2  GCTACCAATATAGAATTC  1111