BAC Information

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BAC

Clone NameB6Ng01-089K11
Chromosome8 (Build37)3 (Build37)
Map Location 106,418,816 - 106,419,9667,220,756 - 7,221,327
singlet/doubletsingletsinglet
Overlap geneLOC100041397
Upstream geneLOC100041368, 1600027J07Rik
Downstream geneLOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089K11.bB6Ng01-089K11.g
ACCDH902178DH902179
length1,123963
definitionDH902178|Mus musculus domesticus DNA, BAC clone: B6Ng01-089K11, 5' end.DH902179|Mus musculus domesticus DNA, BAC clone: B6Ng01-089K11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(106,418,816 - 106,419,966)(7,220,756 - 7,221,327)
sequence
gaattcaacatagaaatttggagtagattcagatgttcagaccataacaa
ttagtgccttttgagggcccggagaacagctttgagcttccagtacacac
agggaagctgaggactccagtcactattcacagagagccccacccctgcc
tgttattttttttcctgattcctgtttatctaaatacagaaaaacagagc
atgtgctacctctactgatctttactaagctcactaacatttagagacac
tagttgtgttcctggcagcctttctaccctggttcattgtatacggtgga
tgagacatttgtgaatgcccttacagttcagaccgtggaccccaggaggg
atcagagactgagatactgcagatagctccaggttatccattcctttcct
gggagggctgatgatctcctagtcccacccatggaacttccagcttgccc
agttgttcccagtaaatcccacagtacagtagatacagtgaggtaacccc
aaacccagagaacctaccttttcccctagctctgccccagtgtcctttat
ggccttggagaaataacttcctctttctgggctcttttttccccatctgg
aaacccaggcaattgggtgggccaacacctaagaacaagctttgtgaacc
acccctggtctttcaaagagaattaaagcctatatgagtttctgcaacgc
aaaacagcagaaactgatttatagctccacgacccgacctttgggatggt
gtgttccttattgcaaagatagtccagagtctgtacatctggcagatgga
aggagaaagcagaacatttggtcctttgggtctaggctcccgtaagtggc
ccttctggggcacgaacactgaaaactgtttcacttctgagggtcccgtg
cacacatccaacatctacaagtgccactgactttgtgttcaaggacttct
gtgattgaacttagacaagcagctggttcatcagtcgaagtctcctcccc
cccattcacagtgaggaacgactcagagagggatccattctaggattcat
tttctagtcctctcaagggggtaggggaactaaccaggttccgaatgctt
gtcaggcctgtgccttagctcaa
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgattatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atctctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagcactctgcactaaacccatctg
gtcctgggctttttttggctgggagactattaataactgtttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcattttctgattttgttaa
ttaggattttgtccctgtgccctttagtgagtctagctaagggtttatct
atcttgttgattttctcaaagaaccaactcctcgtttggttaattctttg
aatagttcttcttgtttccacttggttgatttcacccctgagtttgatta
tttcctgccgtctactcctcttgggtgaatttgcttcctttttttctaga
gcttttagatgtgttgtcaagctgctagtatgtgctctctcccgtttttt
cttgacggcactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_106418816_106419966
seq2: B6Ng01-089K11.b_44_1166 (reverse)

seq1  TTGAGGCTAGAGGCACAGGCCTGGAGAAGCATTCGGGAGCCTTGAGTATT  50
      |||| |||| |||||||||||| || |||||||| ||| ||| |    ||
seq2  TTGA-GCTA-AGGCACAGGCCT-GACAAGCATTC-GGAACCTGG----TT  42

seq1  AGTTTCACCCTACCACCCCTTGGGAGTGACTTAGAAAATGGATTCCTTAG  100
      ||||   ||||||  ||||||| ||| ||| ||||||||| ||  | |||
seq2  AGTT--CCCCTAC--CCCCTTGAGAG-GAC-TAGAAAATGAAT--CCTAG  84

seq1  AATGGATCCCTCTCTTGAGTCTGTTTCCTCAACTGTGGAATGGGGGGGGG  150
      |||||||||||||| ||||||   |||||| ||||| ||||  |||||||
seq2  AATGGATCCCTCTC-TGAGTC--GTTCCTC-ACTGT-GAAT--GGGGGGG  127

seq1  GGGAGACTTCGACTGAATGAACCAGCTGCTTGTTCTAAGTTCAATCCACA  200
       |||||||||||||| |||||||||||||||| |||||||||||| ||| 
seq2  AGGAGACTTCGACTG-ATGAACCAGCTGCTTG-TCTAAGTTCAAT-CAC-  173

seq1  AGAAGTCCTTGAACACAAAGTCAGTGGCACTTGTAGATGTTTGGATGTGT  250
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAAGTCCTTGAACACAAAGTCAGTGGCACTTGTAGATG-TTGGATGTGT  222

seq1  GCACGGGGACCCTCAGAAGTGAAACAGTTTTCAGTGTTCGTGCCCCAGAA  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAC-GGGACCCTCAGAAGTGAAACAGTTTTCAGTGTTCGTGCCCCAGAA  271

seq1  GGGCCACTTACGGGAGCCTAGACCCAAAGGACCAAATGTTCTGCTTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCACTTACGGGAGCCTAGACCCAAAGGACCAAATGTTCTGCTTTCTC  321

seq1  CTTCCATCTGCCAGATGTACAGACTCTGGACTATCTTTGCAATAAGGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATCTGCCAGATGTACAGACTCTGGACTATCTTTGCAATAAGGAAC  371

seq1  ACACCATCCCAAAGGTCGGGTCGTGGAGCTATAAATCAGTTTCTGCTG-T  449
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACACCATCCCAAAGGTCGGGTCGTGGAGCTATAAATCAGTTTCTGCTGTT  421

seq1  TTGCGTTGCAGAAACTCATATAGGCTTTAATTCTCTTTGAAAGACCAGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGTTGCAGAAACTCATATAGGCTTTAATTCTCTTTGAAAGACCAGGG  471

seq1  GTGGTTCACAAAGCTTGTTCTTAGGTGTTGGCCCACCCAATTGCCTGGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCACAAAGCTTGTTCTTAGGTGTTGGCCCACCCAATTGCCTGGGT  521

seq1  TTCCAGATGGGGAAAAAAGAGCCCAGAAAGAGGAAGTTATTTCTCCAAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGATGGGGAAAAAAGAGCCCAGAAAGAGGAAGTTATTTCTCCAAGG  571

seq1  CCATAAAGGACACTGGGGCAGAGCTAGGGGAAAAGGTAGGTTCTCTGGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAGGACACTGGGGCAGAGCTAGGGGAAAAGGTAGGTTCTCTGGGT  621

seq1  TTGGGGTTACCTCACTGTATCTACTGTACTGTGGGATTTACTGGGAACAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTTACCTCACTGTATCTACTGTACTGTGGGATTTACTGGGAACAA  671

seq1  CTGGGCAAGCTGGAAGTTCCATGGGTGGGACTAGGAGATCATCAGCCCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAAGCTGGAAGTTCCATGGGTGGGACTAGGAGATCATCAGCCCTC  721

seq1  CCAGGAAAGGAATGGATAACCTGGAGCTATCTGCAGTATCTCAGTCTCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAAGGAATGGATAACCTGGAGCTATCTGCAGTATCTCAGTCTCTG  771

seq1  ATCCCTCCTGGGGTCCACGGTCTGAACTGTAAGGGCATTCACAAATGTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCCTGGGGTCCACGGTCTGAACTGTAAGGGCATTCACAAATGTCT  821

seq1  CATCCACCGTATACAATGAACCAGGGTAGAAAGGCTGCCAGGAACACAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACCGTATACAATGAACCAGGGTAGAAAGGCTGCCAGGAACACAAC  871

seq1  TAGTGTCTCTAAATGTTAGTGAGCTTAGTAAAGATCAGTAGAGGTAGCAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTCTCTAAATGTTAGTGAGCTTAGTAAAGATCAGTAGAGGTAGCAC  921

seq1  ATGCTCTGTTTTTCTGTATTTAGATAAACAGGAATCAGGAAAAAAAATAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTGTTTTTCTGTATTTAGATAAACAGGAATCAGGAAAAAAAATAA  971

seq1  CAGGCAGGGGTGGGGCTCTCTGTGAATAGTGACTGGAGTCCTCAGCTTCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGGGGTGGGGCTCTCTGTGAATAGTGACTGGAGTCCTCAGCTTCC  1021

seq1  CTGTGTGTACTGGAAGCTCAAAGCTGTTCTCCGGGCCCTCAAAAGGCACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTACTGGAAGCTCAAAGCTGTTCTCCGGGCCCTCAAAAGGCACT  1071

seq1  AATTGTTATGGTCTGAACATCTGAATCTACTCCAAATTTCTATGTTGAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTATGGTCTGAACATCTGAATCTACTCCAAATTTCTATGTTGAAT  1121

seq1  TC  1151
      ||
seq2  TC  1123

seq1: chr3_7220756_7221327
seq2: B6Ng01-089K11.g_72_643 (reverse)

seq1  TCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTC  50

seq1  TAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTC  100
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAAACAGTCCCATATCCCCTAAAGAAATAGAAACAGTTATTAATAGTCTC  100

seq1  CCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCA  150
      |||||||||||||||||||||||||| |||||||||||||||| ||||||
seq2  CCAGCCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTGCTATCA  150

seq1  GACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGA  200

seq1  TAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACT  250

seq1  CTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACC  300

seq1  AATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTA  350

seq1  ACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGT  400

seq1  TTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGT  450
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTATTCCAGGGATGCAGAGATGGTTTAATATACGAAAATCCATCAATGT  450

seq1  AATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGT  500
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATCCATTATATAAACAAACTCAAAGACAAAAACCACATAATCATCTCGT  500

seq1  TAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAA  550

seq1  GTTCTGGAAAGATCAGGAATTC  572
      ||||||||||||||||||||||
seq2  GTTCTGGAAAGATCAGGAATTC  572