BAC Information

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BAC

Clone NameB6Ng01-089K19
Chromosome3 (Build37)
Map Location 48,431,343 - 48,535,335
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666202, LOC666208, 1700018B24Rik
Downstream geneLOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089K19.bB6Ng01-089K19.g
ACCDH902194DH902195
length1,1431,073
definitionDH902194|Mus musculus domesticus DNA, BAC clone: B6Ng01-089K19, 5' end.DH902195|Mus musculus domesticus DNA, BAC clone: B6Ng01-089K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,534,179 - 48,535,335)(48,431,343 - 48,432,423)
sequence
gaattctctgtttagctctgtacctcatttttaaaattggtaattggggt
tgttgctgtctaacttcttgagtttcttataaattttgaatattagtcct
ctgtcagatgtaggttggtgaagatcgtttcccaatatgtgggttgccaa
tttgtcctgttgacagtgtcctacaattttttttttttttttttttttag
gatctttcaaatttcagtaaccatttgacttgaactgtatttcagttgta
caggatccctatctgaaaagctctgaaatcaattatcagttaaaaaaaaa
accttaaaacctattatatcacattgtaatacagtaatttagtcagatat
tggtaaaagaatacctctgttaccaaaagtctgctaacagagaaattaat
atgagcttggtgattcattacatgatttctatattacttcaattaaacat
caaaattttgaatgaatcaattgtatttttatatcaacttaatttgtaaa
atatcttcttatatttctatgttttctgtggttttcaaagttatttactt
gttttacatttgacttttttctccattttcaatatcatcagacattattt
atgtttttcaatatgccaatctttaggaactaccctaaaataaaattatt
tgatcataagcaggagttagtaggaaagatgtaggtgattgtgccctgac
ttttttcctgctgaaaaataatgcattgtttcctatgggtgattatctga
ttattaaaggatatgatgcagatgggatataacttatttttgtcattagt
attgtgaggacaaagaattagtatttatattttaataaataaaaaataaa
aagtattagccacataaattatttctacattgaagtaccatttaaagttc
tttaaattttaaatgaaaaaatttataaagtatttctttacaaatctgat
tttctattatttgagaaatccatttggtggatcttatagacaatattacc
tctgagttttaaatgtacttaattacatagacatctaacctgcatgcatt
atttgggaagactatggaatattacctatacttctggagttaatttttaa
aactaatttcactagacttcaaaggtaattggataatctagct
gaattcattaaatcacctcactggggcttcattaaaacaaaataaaatga
atggttgaaaatgagaaccaaaagatgtgtatgtagaaagaactactaat
caaagttgttcagaatttattgtagatgtaaatgcagaatagcttaaagt
gaatgaatagctcaatgagcaagcaaaggagaataaagagaacacattct
atataaattatgtaaaataaagtatacatgcactttacatacatttgttt
cttttacaaattttcttttagctggttttgctattttaaaattaaaattc
ttatattgatttattgatcaatggcctttctgcacactttctcactacta
aacccttattctagctcccacactaaagcaaataaagtcaatttgggcac
cattttcttacacagcctttgtaagtatttcatgaacctgatatgtttta
gctaacagattataaatgttctgtttaaagattaaaatctgtgttatttg
tagcaggagagtttacctttaaccttgtgatggttaatcttgtcaacttg
atgtgatttgaagtcacctaggagacaaacctctgccctgttccttgaga
gtgcttccaagtaagtttaaattgggtgggtaaacttatttttgaatgta
gcctgcacctttctatgagattgagcttcaccatgaatgtctatgtcctg
actgtacacagtgtgacccactgccgcatgctcacagcagcagcaccttt
ctgtcctgaattgctgtaccagttatgagcccaaataagcctttcttccc
ttaagatacttttggtatacaatgtgaaagtaattagtataattactatg
gttgtaccatttttaaagaagacctaggaaatatctctctgtgagaatat
atgaaaacagaggctgtttcatatcagaattgttcacctagcatcttgtt
ccaaaaagatttctcatttcatatcaactctgcaagatatttttttttgt
actgtgtagccacttgtctgatgacatatgaatctagtctggatttgatc
acaaaacatgatgcaaatacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_48534179_48535335
seq2: B6Ng01-089K19.b_52_1194 (reverse)

seq1  AGCTAGATTAATCCAATTAACTTTTAAAAATCTTAAGTGAAAAACTCTAG  50
      ||||||||| ||||||||| ||||   || |||  |||||||     |||
seq2  AGCTAGATT-ATCCAATTACCTTT--GAAGTCT--AGTGAAA----TTAG  41

seq1  TTTTAAAAATATACTTCAGAAATTATAAGTTAATATTTCATTAGTCTTCC  100
      ||||||||||  ||| ||| || ||| || ||||||| || |||||||||
seq2  TTTTAAAAATTAACTCCAG-AAGTAT-AGGTAATATTCCA-TAGTCTTCC  88

seq1  CAAATAATTGCATGCAAGGTTAAGATGTCCTATGTAATTAAGTACATTTT  150
      ||||||| ||||||| ||||| |||||| ||||||||||||||||| |||
seq2  CAAATAA-TGCATGC-AGGTT-AGATGT-CTATGTAATTAAGTACA-TTT  133

seq1  AAAACTCAGAGGTTAATATTTGTCTTAATAAGAATCACCAGATTGGATTT  200
      |||||||||||| ||||| ||||||  ||||||  ||||| | |||||||
seq2  AAAACTCAGAGG-TAATA-TTGTCT--ATAAGATCCACCA-AATGGATTT  178

seq1  CTCAAATATATGAAAATCAGATTTGTAAAG-AATAC-TTATAAATTTTTT  248
      ||||||||   ||||||||||||||||||| ||||| |||||||||||||
seq2  CTCAAATAATAGAAAATCAGATTTGTAAAGAAATACTTTATAAATTTTTT  228

seq1  CATTTAAAATTTAAAGAACTTTTAAATGTTACTTCAATGTAG-AATAATT  297
      ||||||||||||||||||| |||||||| ||||||||||||| |||||||
seq2  CATTTAAAATTTAAAGAAC-TTTAAATGGTACTTCAATGTAGAAATAATT  277

seq1  TATGT-GCTGATACTTTTTATTTTT--ATTATT-ATATATTAATACCTAA  343
      ||||| ||| |||||||||||||||   ||||| | |||| |||| ||||
seq2  TATGTGGCTAATACTTTTTATTTTTTATTTATTAAAATATAAATA-CTAA  326

seq1  TTCTTTGTC--TACAATACTGAATGAC-AGAATAAGTTATATCCCATCTG  390
      |||||||||   |||||||| |||||| | ||||||||||||||||||||
seq2  TTCTTTGTCCTCACAATACT-AATGACAAAAATAAGTTATATCCCATCTG  375

seq1  CATCATAT-CTTTAATAATCAGATAATCACCCATAGGAAACAATGCATTA  439
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CATCATATCCTTTAATAATCAGATAATCACCCATAGGAAACAATGCATTA  425

seq1  TTTTTCAGCAGGAAAAAAGTCAGGGCACAATCACCTACATCTTTCCTACT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGCAGGAAAAAAGTCAGGGCACAATCACCTACATCTTTCCTACT  475

seq1  AACTCCTGCTTATGATCAAATAATTTTATTTTAGGGTAGTTCCTAAAGAT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTGCTTATGATCAAATAATTTTATTTTAGGGTAGTTCCTAAAGAT  525

seq1  TGGCATATTGAAAAACATAAATAATGTCTGATGATATTGAAAATGGAGAA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATATTGAAAAACATAAATAATGTCTGATGATATTGAAAATGGAGAA  575

seq1  AAAAGTCAAATGTAAAACAAGTAAATAACTTTGAAAACCACAGAAAACAT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCAAATGTAAAACAAGTAAATAACTTTGAAAACCACAGAAAACAT  625

seq1  AGAAATATAAGAAGATATTTTACAAATTAAGTTGATATAAAAATACAATT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATAAGAAGATATTTTACAAATTAAGTTGATATAAAAATACAATT  675

seq1  GATTCATTCAAAATTTTGATGTTTAATTGAAGTAATATAGAAATCATGTA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATTCAAAATTTTGATGTTTAATTGAAGTAATATAGAAATCATGTA  725

seq1  ATGAATCACCAAGCTCATATTAATTTCTCTGTTAGCAGACTTTTGGTAAC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCACCAAGCTCATATTAATTTCTCTGTTAGCAGACTTTTGGTAAC  775

seq1  AGAGGTATTCTTTTACCAATATCTGACTAAATTACTGTATTACAATGTGA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTATTCTTTTACCAATATCTGACTAAATTACTGTATTACAATGTGA  825

seq1  TATAATAGGTTTTAAGGTTTTTTTTTTAACTGATAATTGATTTCAGAGCT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAGGTTTTAAGGTTTTTTTTTTAACTGATAATTGATTTCAGAGCT  875

seq1  TTTCAGATAGGGATCCTGTACAACTGAAATACAGTTCAAGTCAAATGGTT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATAGGGATCCTGTACAACTGAAATACAGTTCAAGTCAAATGGTT  925

seq1  ACTGAAATTTGAAAGATCCTAAAAAAAAAAAAAAAAAAAAAATTGTAGGA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATTTGAAAGATCCTAAAAAAAAAAAAAAAAAAAAAATTGTAGGA  975

seq1  CACTGTCAACAGGACAAATTGGCAACCCACATATTGGGAAACGATCTTCA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCAACAGGACAAATTGGCAACCCACATATTGGGAAACGATCTTCA  1025

seq1  CCAACCTACATCTGACAGAGGACTAATATTCAAAATTTATAAGAAACTCA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTACATCTGACAGAGGACTAATATTCAAAATTTATAAGAAACTCA  1075

seq1  AGAAGTTAGACAGCAACAACCCCAATTACCAATTTTAAAAATGAGGTACA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTAGACAGCAACAACCCCAATTACCAATTTTAAAAATGAGGTACA  1125

seq1  GAGCTAAACAGAGAATTC  1157
      ||||||||||||||||||
seq2  GAGCTAAACAGAGAATTC  1143

seq1: chr3_48431343_48432423
seq2: B6Ng01-089K19.g_69_1135

seq1  GAATTCATTAAATCACCTCACTGGGGCTTCATTAAAACAAAATAAAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAATCACCTCACTGGGGCTTCATTAAAACAAAATAAAATGA  50

seq1  ATGGTTGAAAATGAGAACCAAAAGATGTGTATGTAGAAAGAACTACTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGAAAATGAGAACCAAAAGATGTGTATGTAGAAAGAACTACTAAT  100

seq1  CAAAGTTGTTCAGAATTTATTGTAGATGTAAATGCAGAATAGCTTAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTGTTCAGAATTTATTGTAGATGTAAATGCAGAATAGCTTAAAGT  150

seq1  GAATGAATAGCTCAATGAGCAAGCAAAGGAGAATAAAGAGAACACATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATAGCTCAATGAGCAAGCAAAGGAGAATAAAGAGAACACATTCT  200

seq1  ATATAAATTATGTAAAATAAAGTATACATGCACTTTACATACATTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATTATGTAAAATAAAGTATACATGCACTTTACATACATTTGTTT  250

seq1  CTTTTACAAATTTTCTTTTAGCTGGTTTTGCTATTTTAAAATTAAAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACAAATTTTCTTTTAGCTGGTTTTGCTATTTTAAAATTAAAATTC  300

seq1  TTATATTGATTTATTGATCAATGGCCTTTCTGCACACTTTCTCACTACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTGATTTATTGATCAATGGCCTTTCTGCACACTTTCTCACTACTA  350

seq1  AACCCTTATTCTAGCTCCCACACTAAAGCAAATAAAGTCAATTTGGGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTATTCTAGCTCCCACACTAAAGCAAATAAAGTCAATTTGGGCAC  400

seq1  CATTTTCTTACACAGCCTTTGTAAGTATTTCATGAACCTGATATGTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTACACAGCCTTTGTAAGTATTTCATGAACCTGATATGTTTTA  450

seq1  GCTAACAGATTATAAATGTTCTGTTTAAAGATTAAAATCTGTGTTATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACAGATTATAAATGTTCTGTTTAAAGATTAAAATCTGTGTTATTTG  500

seq1  TAGCAGGAGAGTTTACCTTTAACCTTGTGATGGTTAATCTTGTCAACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGAGAGTTTACCTTTAACCTTGTGATGGTTAATCTTGTCAACTTG  550

seq1  ATGTGATTTGAAGTCACCTAGGAGACAAACCTCTGCCCTGTTCCTTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATTTGAAGTCACCTAGGAGACAAACCTCTGCCCTGTTCCTTGAGA  600

seq1  GTGCTTCCAAGTAAGTTTAAATTGGGTGGGTAAACTTA-TTTTGAATGTA  649
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTGCTTCCAAGTAAGTTTAAATTGGGTGGGTAAACTTATTTTTGAATGTA  650

seq1  GCCTGCACCTTTCTATGAGATTGAGCTTCACCATGAATGTCTATGTCCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCACCTTTCTATGAGATTGAGCTTCACCATGAATGTCTATGTCCTG  700

seq1  ACTGTACACAGTGTGACCCACTGCCGCATGCTCACAGCAGCAGCACCTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACACAGTGTGACCCACTGCCGCATGCTCACAGCAGCAGCACCTTT  750

seq1  CTGTCCTGAATTGCTGTACCAGTTATGAGCCCAAATAAGCCTTTCTTCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGAATTGCTGTACCAGTTATGAGCCCAAATAAGCCTTTCTTCCC  800

seq1  TTAAGATACTTTTGGTATACAATGTGAAAAGTAATTAGTATAATTACTAT  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTAAGATACTTTTGGTATACAATGTG-AAAGTAATTAGTATAATTACTAT  849

seq1  GGTTGTACCATTTTTAAAGAAGACCTAGGAAATATCTTCTCTGTGAGAAT  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGTTGTACCATTTTTAAAGAAGACCTAGGAAATATC-TCTCTGTGAGAAT  898

seq1  ATATGAAAACAGAGGCTTGTTTCAATATCAGAATTGTTCACCTAGCATCT  949
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  ATATGAAAACAGAGGC-TGTTTC-ATATCAGAATTGTTCACCTAGCATCT  946

seq1  TGTCCCAAAAAGATTTTCTTCATTTCATATCAACTCTGCCAAGGATATTT  999
      ||| ||||||||||||   ||||||||||||||||||||  | |||| ||
seq2  TGTTCCAAAAAGATTT--CTCATTTCATATCAACTCTGC--AAGATA-TT  991

seq1  TTTTTTTGTACTGTGTAG-CACTTGTCTGATTGAACCATTATGGAATCTA  1048
      |||||||||||||||||| ||||||||||| |||  || ||| |||||| 
seq2  TTTTTTTGTACTGTGTAGCCACTTGTCTGA-TGA--CA-TAT-GAATCT-  1035

seq1  AGTCTGAATTTGATCACAAAACATGAGTGCAAA  1081
      |||||| ||||||||||||||||||| ||||||
seq2  AGTCTGGATTTGATCACAAAACATGA-TGCAAA  1067