BAC Information

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BAC

Clone NameB6Ng01-089M12
Chromosome3 (Build37)
Map Location 141,699,622 - 141,869,098
singlet/doubletdoublet
Overlap geneGabarapl2-ps3
Upstream genePdha2, Unc5c, LOC100039923, Bmpr1b
Downstream genePdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089M12.bB6Ng01-089M12.g
ACCDH902270DH902271
length1,1011,057
definitionDH902270|Mus musculus domesticus DNA, BAC clone: B6Ng01-089M12, 5' end.DH902271|Mus musculus domesticus DNA, BAC clone: B6Ng01-089M12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,699,622 - 141,700,742)(141,868,020 - 141,869,098)
sequence
gaattccagacattcatcctccaaatcctggaattatctttgaacttcag
cccccctgatcctccataccccatgagctggtagacgtaatgaattctgc
acagccaatggcctgcccactgctccctctcttcccagacatctgtgcta
gatactctgtgttcatcccaggtaggccgaagcaaaatgccaaatgctct
cttgcaaaactcagtaccaagtatcttctgacagattaaagagacaacca
accccaggccaggtgtttaaggccggttacatggtattttcttcatgtga
aaatacaaggcctgctattccagagtttgtctctaccacctcgcatcctt
ggaccaccttaaaagcatctaggccatctcagtcttttgtccacctcttc
ctaccttcagattacctctctctatataataaagtcaaacttgggttcct
tcataatctcagacaccgattcctttgagattttatgtttcctttttgac
ctcaggctctgaacatctctgaatcctcacacagcctgtgctttatgtaa
tccctgtgtgatatcttgaatattgcttatttttactattgccttatgcg
ttaataatctgttggctccaccaggagaaaaaatgtgccacagttatttc
tcatccagaggtgcccgaggatttgatcatggcaaatactcagtgtttgt
tgaatttaactaaaatgttaatgtgttccctgcaggtttacagccaaatc
aaattcgtcagtgacccactaggaatgaacaaactggtcttgctcacaat
tagctgaactgtcttctccataatcacagcctatgggcgtgtactgtgtc
agaacatatgtgttcaccattattgtcgacgtaacttaagaattctgaga
aatggatatacataaataacttttgatctgagaaagaaacacatttgtaa
aagtaacccttacatcctaatgggccaaaatagcctagctttcaagcaac
atgaaatgcttaaatgcatttttaaaaataaattaaaaaggcagaacata
attagagaaatctgtctccttaatgtgctcttggatttcactaggccaca
c
gaattcccaagtgccttttcactctgaaatgctttggccacattgccata
gatggagaatttaaagaaaaagagaaacacagaaaatttatgaaggtcga
ctcaactgcttttctataacattcatagaataaatgaatatttatttact
aagcactagtttgcagcaggcaccatgctagagtctaaaaatgttaagac
tatgtagatcatgctcatatattgaattcattgaggctattttgacagat
gaccatgaaaacaaactattaatatgtaataggtaaaagtgggttatttc
tccctgaatgaataagcctgtgtcttcgagaagactgtagacctgtctcg
tgcagaatattaagaggataatcaaccagacagcaatctatagcacgtgg
agagtttgtgtgaacaaaagcatggaaataaggagcgagggcgaaccgga
gcttaattcttagcctttgacacttcagcacatggaggttgagcatgagt
cctattcgactgagacaagactctatttgactctattagataccagggag
acagttgcatgatgggtcagtattttgcagagtatgtctcagtaggatag
aattgcagatgaataacaatggagaaaacagataaaatgttctcatttta
atactctaggtaggaagcaatggcttcagccctaggaaacaaagagaaga
gaagggattctgtacatgttttggaagcatggtagcatccgagtgttcca
caaagttgcatcgtagatgagaaaggaaagcctggggtctggagctgagt
gaatgagggagaaagagcaagaatttgaggctaaagcagacaaaactaga
gtaagatcagcacacatagaacttcacaccacacaagttggatgctgtaa
aactgtgatggagacactggagaaggtttacgattgattttgtttagaat
ctcactctaatgtctcagtgagaagactgatagagctagtgttgagaggg
tggttatctgggtacgagaccattctctataatctactcttctgtcttca
agcagcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_141699622_141700742
seq2: B6Ng01-089M12.b_42_1142

seq1  GAATTCCAGACATTCATCCTCCAAATCCTGGAATTATCTTTGAACTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACATTCATCCTCCAAATCCTGGAATTATCTTTGAACTTCAG  50

seq1  CCCCCCTGATCCTCCATACCCCATGAGCTGGTAGACGTAATGAATTCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCTGATCCTCCATACCCCATGAGCTGGTAGACGTAATGAATTCTGC  100

seq1  ACAGCCAATGGCCTGCCCACTGCTCCCTCTCTTCCCAGACATCTGTGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAATGGCCTGCCCACTGCTCCCTCTCTTCCCAGACATCTGTGCTA  150

seq1  GATACTCTGTGTTCATCCCAGGTAGGCCGAAGCAAAATGCCAAATGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTCTGTGTTCATCCCAGGTAGGCCGAAGCAAAATGCCAAATGCTCT  200

seq1  CTTGCAAAACTCAGTACCAAGTATCTTCTGACAGATTAAAGAGACAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAAAACTCAGTACCAAGTATCTTCTGACAGATTAAAGAGACAACCA  250

seq1  ACCCCAGGCCAGGTGTTTAAGGCCGGTTACATGGTATTTTCTTCATGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGGCCAGGTGTTTAAGGCCGGTTACATGGTATTTTCTTCATGTGA  300

seq1  AAATACAAGGCCTGCTATTCCAGAGTTTGTCTCTACCACCTCGCATCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAAGGCCTGCTATTCCAGAGTTTGTCTCTACCACCTCGCATCCTT  350

seq1  GGACCACCTTAAAAGCATCTAGGCCATCTCAGTCTTTTGTCCACCTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACCTTAAAAGCATCTAGGCCATCTCAGTCTTTTGTCCACCTCTTC  400

seq1  CTACCTTCAGATTACCTCTCTCTATATAATAAAGTCAAACTTGGGTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTCAGATTACCTCTCTCTATATAATAAAGTCAAACTTGGGTTCCT  450

seq1  TCATAATCTCAGACACCGATTCCTTTGAGATTTTATGTTTCCTTTTTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATCTCAGACACCGATTCCTTTGAGATTTTATGTTTCCTTTTTGAC  500

seq1  CTCAGGCTCTGAACATCTCTGAATCCTCACACAGCCTGTGCTTTATGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTCTGAACATCTCTGAATCCTCACACAGCCTGTGCTTTATGTAA  550

seq1  TCCCTGTGTGATATCTTGAATATTGCTTATTTTTACTATTGCCTTATGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTGTGATATCTTGAATATTGCTTATTTTTACTATTGCCTTATGCG  600

seq1  TTAATAATCTGTTGGCTCCACCAGGAG-AAAAATGTGCCACAGTTATTTC  649
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTAATAATCTGTTGGCTCCACCAGGAGAAAAAATGTGCCACAGTTATTTC  650

seq1  TCATCCAGAGGTGCCCGAGGATTTGATCATGGCAAATACTCAGTGTTTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAGAGGTGCCCGAGGATTTGATCATGGCAAATACTCAGTGTTTGT  700

seq1  TGAATTTAACTAAAATGTTAATGTGTT-CCTGCAGGTTTACAGCCAAATC  748
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGAATTTAACTAAAATGTTAATGTGTTCCCTGCAGGTTTACAGCCAAATC  750

seq1  -AATTCGTCAGTGACCCACTAGGAATGAACAAACTGGTC-TGCTCACAA-  795
       |||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  AAATTCGTCAGTGACCCACTAGGAATGAACAAACTGGTCTTGCTCACAAT  800

seq1  TAGCTGAAACTGTCTTCTCCATAATCACAGCCTAT-GGCGTGTACTGTGT  844
      |||||| |||||||||||||||||||||||||||| ||||||||||||||
seq2  TAGCTG-AACTGTCTTCTCCATAATCACAGCCTATGGGCGTGTACTGTGT  849

seq1  CCAGAACATATGTGTTCACCAATTATTGTCGACGTAACTTAAGAATTCTG  894
       ||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  -CAGAACATATGTGTTCACC-ATTATTGTCGACGTAACTTAAGAATTCTG  897

seq1  AGAAAATGGATTATACATAAATAACTTTTGATCTTGAGAAAAGAAACACA  944
      || ||||||| |||||||||||||||||||||| |||| |||||||||||
seq2  AG-AAATGGA-TATACATAAATAACTTTTGATC-TGAG-AAAGAAACACA  943

seq1  TTTTGTAAAAGTAACCCTTACAATCCTAAAATGGGCCAAAAAATAGCCTT  994
       |||||||||||||||||||| |||||  ||||||||  |||||||||| 
seq2  -TTTGTAAAAGTAACCCTTAC-ATCCT--AATGGGCC--AAAATAGCCT-  986

seq1  AAGCTTTCAAAGCAACATGAAATGGCTTAAATTGCATTTTTAAAAAATAA  1044
       ||||||| |||||||||||||| ||||||| ||||||||| ||||||||
seq2  -AGCTTTC-AAGCAACATGAAAT-GCTTAAA-TGCATTTTT-AAAAATAA  1031

seq1  ATTAAAAAGGGCCAGAACATTAATTAGAGATAATCTGTCTTCCTTAAGTT  1094
      ||||||||||  ||||||| |||||||||| |||||||| |||||||  |
seq2  ATTAAAAAGG--CAGAACA-TAATTAGAGA-AATCTGTC-TCCTTAATGT  1076

seq1  GTCTCTTGGATTTTCACCTAGG-CACAC  1121
      | |||||||| ||||| ||||| |||||
seq2  G-CTCTTGGA-TTTCA-CTAGGCCACAC  1101

seq1: chr3_141868020_141869098
seq2: B6Ng01-089M12.g_70_1126 (reverse)

seq1  CGCTGCTTGGAAGACAGGAAGAAGTAGGATTATAGAGAATTGTGTCTCTG  50
      |||||||| ||||||| |||| |||| ||||||||||||| || ||   |
seq2  CGCTGCTT-GAAGACA-GAAG-AGTA-GATTATAGAGAATGGTCTC---G  43

seq1  TACCCAGAATAAACCACACTCTCAAACACTTAGCTCTAATCAGTCTTCTC  100
      ||||||||   |||||| ||||| ||||| ||||||| ||||||||||||
seq2  TACCCAGA--TAACCACCCTCTC-AACAC-TAGCTCT-ATCAGTCTTCTC  88

seq1  ACTGAGACAATTAGAGTGAGATTCTTAAAACATAAATCAATCGTAAAACC  150
      |||||||| ||||||||||||||||  ||||| ||||||||||||||  |
seq2  ACTGAGAC-ATTAGAGTGAGATTCT--AAACA-AAATCAATCGTAAA--C  132

seq1  TTTCTCCAGTGTCTTCCATCACAGTTTTTACAGCATCCAACTTTGTGTGG  200
       |||||||||||| |||||||||| |||||||||||||||| ||||||||
seq2  CTTCTCCAGTGTC-TCCATCACAG-TTTTACAGCATCCAAC-TTGTGTGG  179

seq1  TGTGAAGTTCTATGTGTGCTGATCTTACTCTAGTTTTGGTCTGCTTTAGC  250
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTGAAGTTCTATGTGTGCTGATCTTACTCTAGTTTT-GTCTGCTTTAGC  228

seq1  CTCAAATTCTTGCTCTTTCTCCCTCATTCACTCAGCTCCAGACCCCAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATTCTTGCTCTTTCTCCCTCATTCACTCAGCTCCAGACCCCAGGC  278

seq1  TTTCCTTTCTCCTTCTACGATGCAACTTTGTGGAACACTCGGATGCTACC  350
      |||||||||| | |||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCT-CATCTACGATGCAACTTTGTGGAACACTCGGATGCTACC  327

seq1  ATGCTTCCAAAACATGTACAGAATCCCTTCTCTTCTCTTTG-TTCCTAGG  399
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATGCTTCCAAAACATGTACAGAATCCCTTCTCTTCTCTTTGTTTCCTAGG  377

seq1  GCTGAAGCCATTGCTTCCTACCTAGAGTATTAAAATGAGAACATTTTATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGCCATTGCTTCCTACCTAGAGTATTAAAATGAGAACATTTTATC  427

seq1  TGTTTTCTCCATTGTTATTCATCTGCAATTCTATCCTACTGAGACATACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTCCATTGTTATTCATCTGCAATTCTATCCTACTGAGACATACT  477

seq1  CTGCAAAATACTGACCCATCATGCAACTGTCTCCCTGGTATCTAATAGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAATACTGACCCATCATGCAACTGTCTCCCTGGTATCTAATAGAG  527

seq1  TCAAATAGAGTCTTGTCTCAGTCGAATAGGACTCATGCTCAACCTCCATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGAGTCTTGTCTCAGTCGAATAGGACTCATGCTCAACCTCCATG  577

seq1  TGCTGAAGTGTCAAAGGCTAAGAATTAAGCTCCGGTTCGCCCTCGCTCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAGTGTCAAAGGCTAAGAATTAAGCTCCGGTTCGCCCTCGCTCCT  627

seq1  TATTTCCATGCTTTTGTTCACACAAACTCTCCACGTGCTATAGATTGCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCATGCTTTTGTTCACACAAACTCTCCACGTGCTATAGATTGCTG  677

seq1  TCTGGTTGATTATCCTCTTAATATTCTGCACGAGACAGGTCTACAGTCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTGATTATCCTCTTAATATTCTGCACGAGACAGGTCTACAGTCTT  727

seq1  CTCGAAGACACAGGCTTATTCATTCAGGGAGAAATAACCCACTTTTACCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAGACACAGGCTTATTCATTCAGGGAGAAATAACCCACTTTTACCT  777

seq1  ATTACATATTAATAGTTTGTTTTCATGGTCATCTGTCAAAATAGCCTCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATATTAATAGTTTGTTTTCATGGTCATCTGTCAAAATAGCCTCAA  827

seq1  TGAATTCAATATATGAGCATGATCTACATAGTCTTAACATTTTTAGACTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCAATATATGAGCATGATCTACATAGTCTTAACATTTTTAGACTC  877

seq1  TAGCATGGTGCCTGCTGCAAACTAGTGCTTAGTAAATAAATATTCATTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGGTGCCTGCTGCAAACTAGTGCTTAGTAAATAAATATTCATTTA  927

seq1  TTCTATGAATGTTATAGAAAAGCAGTTGAGTCGACCTTCATAAATTTTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGAATGTTATAGAAAAGCAGTTGAGTCGACCTTCATAAATTTTCT  977

seq1  GTGTTTCTCTTTTTCTTTAAATTCTCCATCTATGGCAATGTGGCCAAAGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTCTTTTTCTTTAAATTCTCCATCTATGGCAATGTGGCCAAAGC  1027

seq1  ATTTCAGAGTGAAAAGGCACTTGGGAATTC  1079
      ||||||||||||||||||||||||||||||
seq2  ATTTCAGAGTGAAAAGGCACTTGGGAATTC  1057