BAC Information

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BAC

Clone NameB6Ng01-090B09
Chromosome3 (Build37)3 (Build37)
Map Location 99,905,666 - 99,906,77346,067,934 - 46,067,984
singlet/doubletsingletsinglet
Overlap geneSpag17
Upstream geneWars2, Tbx15, M6pr-ps, LOC623045
Downstream geneWdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090B09.bB6Ng01-090B09.g
ACCDH902482DH902483
length1,076175
definitionDH902482|Mus musculus domesticus DNA, BAC clone: B6Ng01-090B09, 5' end.DH902483|Mus musculus domesticus DNA, BAC clone: B6Ng01-090B09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(99,905,666 - 99,906,773)(46,067,934 - 46,067,984)
sequence
gaattcacatggtctcgacataattcacgtgcttgttaattacagcaagt
gaaatgaatattcatgtcccacaaagatacagcattttacaccttagtca
agtaattaaatttttatcaaagctaacactttctattattgagggccttc
ctcacagactgcaatgtatgtagtaactctacagaattcatgtcagaaat
ccttaatctgaatgcaagcaagagaacataattggcaaatgcgtaccagt
ccgtagacattgtacggtacaactggcttggtctcttcaaataagtcggg
gtcagggtgcaaacattgttcaatcttagaacccttggctaacaggcatg
tgaccttaggtttagtgcccagcaccacacatacatactcagagtcagga
tcatgaaaccaaaaagatgagacaactattgtcgttcaaaagagaccatg
tggcatcaaagcatcgtgtaacaaaccaaaggtagaagtgcatgagtttc
attagggaactgtatatcagaagacatggtggaatcattcgcttcttggg
tataacgatggaacatggagacaaaagagaatgtattctcagcagatgtg
tgctgagaagctgaaagggttgacattgaaatagaacgtagccctttctg
taagctgaatagtgaggaggcccagagagaagaactttctactgcataat
gttataactacagtatatctacccagattgtgcagggtcagaaaaagcat
gaacttttaaagagagattgcaagcaagatcaggctagaaaaccaacttg
tgatcgtggtgaggagagatccgtgatcctgagctgatggccatgagtgg
tcaagctcaccacagcccgggaaggccagttcatttcctccaaaggacaa
caggcttcaaaaacagtctttagcagctttatatctatttgcttcccaat
catattatttgtttcacatgatctgtttcttaaagatacatattctatga
agatgcacttcccgtatgaattttgaataattttgttagtaggtagatag
gcgatggttggctcttgtagcaagca
atggctctagctgcatatgtagcagagaatggcctagtcggtcatcagtg
ggaggagagacccttggtcctatgaaagttctatgacccagtatagggga
atgccagggccaggaagcaggagtgggtgggttggtgagaagggagggtg
gcgaggaggggataggggatttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_99905666_99906773
seq2: B6Ng01-090B09.b_47_1122

seq1  GAATTCACATGGTCTCGACATAATTCACGTGCTTGTTAATTACAGCAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGGTCTCGACATAATTCACGTGCTTGTTAATTACAGCAAGT  50

seq1  GAAATGAATATTCATGTCCCACAAAGATACAGCATTTTACACCTTAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAATATTCATGTCCCACAAAGATACAGCATTTTACACCTTAGTCA  100

seq1  AGTAATTAAATTTTTATCAAAGCTAACACTTTCTATTATTGAGGGCCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTAAATTTTTATCAAAGCTAACACTTTCTATTATTGAGGGCCTTC  150

seq1  CTCACAGACTGCAATGTATGTAGTAACTCTACAGAATTCATGTCAGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGACTGCAATGTATGTAGTAACTCTACAGAATTCATGTCAGAAAT  200

seq1  CCTTAATCTGAATGCAAGCAAGAGAACATAATTGGCAAATGCGTACCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATCTGAATGCAAGCAAGAGAACATAATTGGCAAATGCGTACCAGT  250

seq1  CCGTAGACATTGTACGGTACAACTGGCTTGGTCTCTTCAAATAAGTCGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAGACATTGTACGGTACAACTGGCTTGGTCTCTTCAAATAAGTCGGG  300

seq1  GTCAGGGTGCAAACATTGTTCAATCTTAGAACCCTTGGCTAACAGGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGTGCAAACATTGTTCAATCTTAGAACCCTTGGCTAACAGGCATG  350

seq1  TGACCTTAGGTTTAGTGCCCAGCACCACACATACATACTCAGAGTCAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTAGGTTTAGTGCCCAGCACCACACATACATACTCAGAGTCAGGA  400

seq1  TCATGAAACCAAAAAGATGAGACAACTATTGTCGTTCAAAAGAGACCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAACCAAAAAGATGAGACAACTATTGTCGTTCAAAAGAGACCATG  450

seq1  TGGCATCAAAGCATCGTGTAACAAACCAAAGGTAGAAGTGCATGAGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCAAAGCATCGTGTAACAAACCAAAGGTAGAAGTGCATGAGTTTC  500

seq1  ATTAGGGAACTGTATATCAGAAGACATGGTGGAATCATTCGCTTCTTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGAACTGTATATCAGAAGACATGGTGGAATCATTCGCTTCTTGGG  550

seq1  TATAACGATGGAACATGGAGACAAAAGAGAATGTATTCTCAGCAGATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACGATGGAACATGGAGACAAAAGAGAATGTATTCTCAGCAGATGTG  600

seq1  TGCTGAGAAGCTGAAAGGGTTGACATTGAAATAGAACGTAGCCC-TTCTG  649
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGCTGAGAAGCTGAAAGGGTTGACATTGAAATAGAACGTAGCCCTTTCTG  650

seq1  TAAGCTGAATAGTGAGGAGGCCCAGAGAGAAGAACTTTCTACTGCATAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGAATAGTGAGGAGGCCCAGAGAGAAGAACTTTCTACTGCATAAT  700

seq1  GTTATAACTACAGTATATCTACCCAGATTGTGCAGGGTCAGAAAAAGCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAACTACAGTATATCTACCCAGATTGTGCAGGGTCAGAAAAAGCAT  750

seq1  GAACTTTTAAAGAGAGATTGCAAAGCAAAGATCAGGGCTAGAAAACCAAC  799
      ||||||||||||||||||||| |||| ||||||| |||||||||||||||
seq2  GAACTTTTAAAGAGAGATTGC-AAGC-AAGATCA-GGCTAGAAAACCAAC  797

seq1  TTGTGATCGTGGTGAGGAGAGATCCGTGATCCTGAGCTGATGGCCATGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATCGTGGTGAGGAGAGATCCGTGATCCTGAGCTGATGGCCATGAG  847

seq1  TGGTCAAGCTCACCACAGCCCGGAGAAAGCCCAGTCCA-TTCCTCCAAAG  898
      ||||||||||||||||||||||  | ||| ||||| || |||||||||||
seq2  TGGTCAAGCTCACCACAGCCCG--GGAAGGCCAGTTCATTTCCTCCAAAG  895

seq1  GACAACAGGCTTTCAAGACAGTCTTTAAGCAGCTTTATATCTATTTGCCT  948
      ||||||||||||  || ||||||||| |||||||||||||||||||| ||
seq2  GACAACAGGCTTCAAAAACAGTCTTT-AGCAGCTTTATATCTATTTG-CT  943

seq1  TCCCAATCATATTTAATTTTGTTTCACATTGTATCTGTTTCTTAAAGATA  998
      |||||||||||||    ||||||||||||   ||||||||||||||||||
seq2  TCCCAATCATATT---ATTTGTTTCACAT--GATCTGTTTCTTAAAGATA  988

seq1  CATATTCTAATGAAGAGATGCACTTTTCACAGTAATGAATATTTTGAAAA  1048
      |||||||| ||||  ||||||||||    | || ||||  ||||||  ||
seq2  CATATTCT-ATGA--AGATGCACTT---CCCGT-ATGA--ATTTTG--AA  1027

seq1  TCATTTTTGTTTAGTAGGTAAAGATAGGGGCAGATGGTTTGGCCTCTTGG  1098
      | |||||   |||||||||  |||||||    |||||||  | ||||| |
seq2  TAATTTT--GTTAGTAGGT--AGATAGG---CGATGGTT--GGCTCTT-G  1067

seq1  TAGCACAGCA  1108
      ||||| ||||
seq2  TAGCA-AGCA  1076

seq1: chr3_46067934_46067984
seq2: B6Ng01-090B09.g_196_250 (reverse)

seq1  CAAAAATCCCCTATCCCCTC----CCCCCTCCCCTTCTTCCCAACCCACC  46
      ||||||||||||||||||||    || ||  |||||||  ||||||||||
seq2  CAAAAATCCCCTATCCCCTCCTCGCCACCCTCCCTTCTCACCAACCCACC  50

seq1  CACTC  51
      |||||
seq2  CACTC  55