BAC Information

Click to search

BAC

Clone NameB6Ng01-090E19
Chromosome3 (Build37)
Map Location 49,937,407 - 49,937,594
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
Downstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090E19.bB6Ng01-090E19.g
ACCDH902642DH902643
length8941,192
definitionDH902642|Mus musculus domesticus DNA, BAC clone: B6Ng01-090E19, 5' end.DH902643|Mus musculus domesticus DNA, BAC clone: B6Ng01-090E19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttggtgagagaatatttggttccattacatgtaacagagaaat
aaacatatttttaaacttttgtgagagaaaaactgaaagaacacaaagct
gggtgagcaagagacagagaggatgtgagaagagtttggggacagaaaag
aatatgatcagaatatatttaatacaaagttttaaaaataaaaattccaa
tcttaggaccaccgctgagtggaacacaacttctgttccaatccaattgg
gcaggatctaagacagcactagggaagcaggaaacccgacctgaccaggg
ccacaagtcctttccggtcagcaccagcaccaggtcaccttgggcgcaga
gtcggcagacacccccaaggtcccctagaggactctccacgtgatctgag
gaccacctgtgagtagaacacaacttctgttccaatccaatcatgctgga
ccagagacagcattagagaagcagaaaacctggcctgaccagggtcacaa
atcccttctggtcagtgccagcaccacgtcacctggacacagagttggtg
gacacccctaaagtccctagaggacagtttctgagacagaccctgtttca
ggattcagacatccggggaccttccctgccagaggagaggggtccatcct
gcccaggagggcttttgctggagcacctggggaagccatcttggttcccg
gatccctcccagactaaaggagtctgcaaccctataggtggaacaacaat
atgaactaagcagtaccccgaaacttgtgtctctagctgcatatgtagca
gaagatggcctagtcggccatcattggaaagagaggcccattggtcttgc
aaactttatatgcccagtacaggggaacgccagggccaagaagt
gaattcacccctgcatctgaagtactcttggttataatagataatattta
taaagaatatttaaagtcagtggggcctagtagagcatgcctttaatccc
agcactctggaggcagaggcagaggcaggaggatttctctgtttgaggcc
agcctggtctacaaagtgagttccaagacagccagggctatacagagaaa
acctgtcttgaaaaaaaaaaaaagagtatttaaagtcatattctatgtct
tttattgtggaattttcttacatgtttaccagggattctgaaatataatt
ttccttcattgtgtgtacattcactttagccttaaagtaatactgcattt
gaaagtgaagattaatagcactgcttctgtctttgatgtaataatctgag
gaataatggtattatttgttctttatctagacccaagttttccttagtta
ggagattattttataatagatcattcaattttattacaggctacatatct
atttaagttgtttgtatactcagtttcattttaatttgcttctttatgtg
tctagatacttatgtagttcttcttggtctccactttttaatttataaca
atagaagtttacacagtctgtgctaattgcattctaatgtgtgttgtttc
ccctttcaactctaaatttattgatctgaggcttttcccatctttcagtc
agtttggctaaagatttgttagttttgcttgcccttcaaagaatgaaact
gtttttattttttaatatacttttgtattattatttttgtttacaattgt
ttttatattttaaccccatctttgttatttatttacatctccaattattt
ttggggtgcaagacatgaggtacatgtttaaataatttatttgtgggttc
ctcggattttgatggggggatttttaatataaacttagacttactttcag
ttatcgcaataaatcctaatgtactggttaccattttcatcctgtctagg
agagatataatttctccttcaggatttatatttggatgattttccccacc
ctggtggtttagcatttccctcaaatttccatatatttaacgggatcttt
atggaattttcttcgaatcctatttgacgcgacattgatccgaatgaatt
ccttaattggtagaattatattggttccacttcactttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49937407_49937594
seq2: B6Ng01-090E19.b_794_941 (reverse)

seq1  ACTTATTGGCCCTGGCTTTCCCCTGTACTGGGGCATATAAAG-TTGCAAG  49
      |||| ||||||||||| |||||||||||| |||||||||||| |||||||
seq2  ACTTCTTGGCCCTGGCGTTCCCCTGTACT-GGGCATATAAAGTTTGCAAG  49

seq1  ACCAAGGGCCCTCCCTTCCTAATGATGGCTGACTAGGCCATCTTCTGCTA  99
      ||||| || |||| ||| | ||||||||| ||||||||||||||||||||
seq2  ACCAATGGGCCTCTCTTTCCAATGATGGCCGACTAGGCCATCTTCTGCTA  99

seq1  CATATGCAGCTAGAGACAGGAGCTCTGGGGGTACTAGTTAGTTCATATTG  149
      ||||||||||||||||||  || | | ||||||||  |||||||||||||
seq2  CATATGCAGCTAGAGACACAAG-TTTCGGGGTACTGCTTAGTTCATATTG  148

seq1  CATTTTGTATTTTCTTTGCATACTGCTTAGTTCATATTG  188
                                             
seq2  ---------------------------------------  148