BAC Information

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BAC

Clone NameB6Ng01-090G21
Chromosome3 (Build37)11 (Build37)
Map Location 16,710,021 - 16,711,1528,855,378 - 8,855,506
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100038947, LOC622425, LOC664795, LOC381484, Ythdf3, LOC100040034
Downstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090G21.bB6Ng01-090G21.g
ACCDH902730DH902731
length1,112322
definitionDH902730|Mus musculus domesticus DNA, BAC clone: B6Ng01-090G21, 5' end.DH902731|Mus musculus domesticus DNA, BAC clone: B6Ng01-090G21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(16,710,021 - 16,711,152)(8,855,378 - 8,855,506)
sequence
gaattccaggttatagcatattggtagcaggtactatatagataagcttg
tgcttggtaggatactactttattgggcaggggtctgtaatgcagcaatc
ttttgttgattgtagaaggtgtttaagctggctgttattgtaccgatttt
atatcttgtgatgttagtagccctccacacatttaatttgggtttagcca
ctaatcttgactagataaataatcagtgaatcaagtgctagagattacaa
attgtctgtctttagttgtcttgtatgcaaataagacattctgtagctga
gttgccaatgcactttgatatatgcaaacacacaagaaactgacagtgca
atgccttacttgtgtggatattcatttaggatagaaaactaaggcaattt
acaaaggtttgtggatgtttggcagcagcagatgccctgtgtgtatttgt
gtgtggagtcactagtgtgctgatcttatttgacaatttagaggcttact
ttttctcaaaggttagagatgaaaataaaaacaaaacaggtttgtaattt
ctcttcattctcagttcataataatacctttgctattgtagagtaccatt
gcttatcctgacaaccacagtttactttcagtcttagctattaaggcttt
taaatgggcaggtagaattttctatggaatgtattttcttctgattggtt
cccattaaacaacccagaatatgtggtcttcaatcagcaggggatacaaa
tgaaatttatcgttgtataacccttctaaagatctagaaaagcaaaagtt
cttactctaggatgtgggtgaggtaagcttcctggaccctagcatttttc
atggtggagcttagagctaaaatccagcagagaatgaagtgctgagcaaa
tgagcactgaaatttcaaaaacaaaacaaacaaacaaaaaaaccaacaca
caacaaacggaaaaggaaatgttcagtgaccttaggatccttgtgctgtt
agatgctgtgtaagcatgtgctgtcccagaagcatccactgcaaggaaag
cctgattatgctagaccctgtggctgggaatggcctgcagcctcactcct
ttacctctccaa
cagggctaggaattggaagtggttgggttggggagcatggtggggagagg
gtataggggactttcgggatagcatttgaactgttaatgaaatatatatt
caaaaaaaaaaaaaaaaaaaggaatgccgagagcatgagaaacattcttc
cttagggaatagtcctggaattggttatccaataccaagtggtaagctct
gaacacacacataagagaaacgttagaaggactgagtatatttcatttat
gtacttagaaatatatatacatatgtatgtatatatgtatatgtatgtat
attatgtatatatgtatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_16710021_16711152
seq2: B6Ng01-090G21.b_47_1158

seq1  GAATTCCAGGTTATAGCATATTGGTAGCAGGTACTATATAGATAAGCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTATAGCATATTGGTAGCAGGTACTATATAGATAAGCTTG  50

seq1  TGCTTGGTAGGATACTACTTTATTGGGCAGGGGTCTGTAATGCAGCAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGTAGGATACTACTTTATTGGGCAGGGGTCTGTAATGCAGCAATC  100

seq1  TTTTGTTGATTGTAGAAGGTGTTTAAGCTGGCTGTTATTGTACCGATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGATTGTAGAAGGTGTTTAAGCTGGCTGTTATTGTACCGATTTT  150

seq1  ATATCTTGTGATGTTAGTAGCCCTCCACACATTTAATTTGGGTTTAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTGTGATGTTAGTAGCCCTCCACACATTTAATTTGGGTTTAGCCA  200

seq1  CTAATCTTGACTAGATAAATAATCAGTGAATCAAGTGCTAGAGATTACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTTGACTAGATAAATAATCAGTGAATCAAGTGCTAGAGATTACAA  250

seq1  ATTGTCTGTCTTTAGTTGTCTTGTATGCAAATAAGACATTCTGTAGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTGTCTTTAGTTGTCTTGTATGCAAATAAGACATTCTGTAGCTGA  300

seq1  GTTGCCAATGCACTTTGATATATGCAAACACACAAGAAACTGACAGTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCAATGCACTTTGATATATGCAAACACACAAGAAACTGACAGTGCA  350

seq1  ATGCCTTACTTGTGTGGATATTCATTTAGGATAGAAAACTAAGGCAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTACTTGTGTGGATATTCATTTAGGATAGAAAACTAAGGCAATTT  400

seq1  ACAAAGGTTTGTGGATGTTTGGCAGCAGCAGATGCCCTGTGTGTATTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGTTTGTGGATGTTTGGCAGCAGCAGATGCCCTGTGTGTATTTGT  450

seq1  GTGTGGAGTCACTAGTGTGCTGATCTTATTTGACAATTTAGAGGCTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAGTCACTAGTGTGCTGATCTTATTTGACAATTTAGAGGCTTACT  500

seq1  TTTTCTCAAAGGTTAGAGATGAAAATAAAAACAAAACAGGTTTGTAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAAAGGTTAGAGATGAAAATAAAAACAAAACAGGTTTGTAATTT  550

seq1  CTCTTCATTCTCAGTTCATAATAATACCTTTGCTATTGTAGAGTACCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCATTCTCAGTTCATAATAATACCTTTGCTATTGTAGAGTACCATT  600

seq1  GCTTATCCTGACAACCACAGTTTACTTTCAGTCTTAGCTATTAAGGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATCCTGACAACCACAGTTTACTTTCAGTCTTAGCTATTAAGGCTTT  650

seq1  TAAATGGGCAGGTAGAATTTTCTATGGAATGTATTTTCTTCTGATTGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGGCAGGTAGAATTTTCTATGGAATGTATTTTCTTCTGATTGGTT  700

seq1  CCCATTAAACAACCCAGAATATGTGGTCTTCAATCAGCAGGGGGATACAA  750
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCCATTAAACAACCCAGAATATGTGGTCTTCAATCAGCA-GGGGATACAA  749

seq1  ATGAAATTTATCGTTGTATAACCCTTCTAAAGATCTAGAAAAGCAAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTTATCGTTGTATAACCCTTCTAAAGATCTAGAAAAGCAAAAGT  799

seq1  TCTTACTCTAGGATGTGGGTGAGGTAAGCTTCCTGGACCCTAGCATTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTCTAGGATGTGGGTGAGGTAAGCTTCCTGGACCCTAGCATTTTT  849

seq1  CATGGTGGAGCTTAGAGCTAAAATCCAGCAGAGAATGAAGTGCTGAGCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGGAGCTTAGAGCTAAAATCCAGCAGAGAATGAAGTGCTGAGCAA  899

seq1  ATGAGCACTGAAATTTCAAAAAACAAAAACAAAACAAAACAAAAAAAACC  950
      ||||||||||||||||       |||||||||||||||  || |||||  
seq2  ATGAGCACTGAAATTT-------CAAAAACAAAACAAACAAACAAAAA--  940

seq1  AAACAACA-ACAACAAAAACAGAAAAAGAAAATGTTCAGTGACCTTTAGG  999
      || ||||| ||||||||    | ||||| |||||||||||||||||   |
seq2  AACCAACACACAACAAA---CGGAAAAGGAAATGTTCAGTGACCTT--AG  985

seq1  GATCCTTTGTGCTGTTTAAGATGCTGTGTAAGCATGTGCTGTCCCAGAGG  1049
      ||||| ||||||||||  |||||||||||||||||||||||||||||| |
seq2  GATCC-TTGTGCTGTT--AGATGCTGTGTAAGCATGTGCTGTCCCAGAAG  1032

seq1  CATCCACTGCACAGGAAAGCCTGATTTATGCTAGAACCCCTGT-GCTGGG  1098
      ||||||||||| |||||||||||| ||||||||||  |||||| ||||||
seq2  CATCCACTGCA-AGGAAAGCCTGA-TTATGCTAGA--CCCTGTGGCTGGG  1078

seq1  AATTGCCTGCAGCCTCACTCCTTTACTTCTCCAA  1132
      ||| |||||||||||||||||||||| |||||||
seq2  AATGGCCTGCAGCCTCACTCCTTTACCTCTCCAA  1112

seq1: chr11_8855378_8855506
seq2: B6Ng01-090G21.g_273_392

seq1  ACACACACATATATATACATATATGTGTATACACATACACATGTGTATAT  50
      |||||||||||     | | | | ||   || |   ||   || ||||||
seq2  ACACACACATA-----AGAGAAACGT---TAGAAGGAC---TGAGTATAT  39

seq1  ---ATGTATATACATACACATGTGTAT--ATATGTATACACACATGTGTA  95
         || ||| ||| || | || | |||  ||||||||  | | |||| ||
seq2  TTCATTTATGTACTTAGAAATATATATACATATGTATGTATATATGTATA  89

seq1  TATATGTATACACACATGTATATATGTATATATA  129
      | ||||||||     |||||||||||||||||||
seq2  TGTATGTATA---TTATGTATATATGTATATATA  120