BAC Information

Click to search

BAC

Clone NameB6Ng01-090J07
Chromosome3 (Build37)
Map Location 74,739,795 - 74,928,095
singlet/doubletdoublet
Overlap geneBC050789
Upstream geneLOC667425, LOC619764, LOC667434, LOC100041551, EG667459
Downstream geneSerpini2, Wdr49, Pdcd10, Serpini1, Golph4, Fstl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090J07.bB6Ng01-090J07.g
ACCDH902839DH902840
length1,047939
definitionDH902839|Mus musculus domesticus DNA, BAC clone: B6Ng01-090J07, 5' end.DH902840|Mus musculus domesticus DNA, BAC clone: B6Ng01-090J07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,927,566 - 74,928,095)(74,739,795 - 74,740,741)
sequence
gaattcacatgtcatcttgtcctttaaaaaatatggtggtgcattccttt
gggaggcatgcacttggaaggcagaagcaggaggatttctgagttcaagg
ccaacctggtctacagagtgagttccaggacagccagagctatacagaga
aaccctgtctcaacacacacacacacacacacacacacacacacacacac
acacacacacacacacacacacacaaacacacacacacacacacaaatta
actggataactggatgagatgtgcttttatttcatatggtctgttacttt
atgatattattaaatatcaaatctgaataatatttatttgggaccattaa
tctgctgcatgatggattacattggtaataaattacaagtaaatacacta
caaatgtcaagatctttgatcattttgattttcttcttattgtaaaggaa
aaatatttcagcaattagtaaaccctgagagaaaccagccagcactttat
aagaaaggtgcccctaaactcttaagttctgcttcagatttgaagttgat
ggaacgtttaggcacatgcttaattttgtttttgattttgtttgtttgtt
taaaattattttatttatttatattcaaaatgttgtcccacctcctggtc
ccccaatttttcttcccgttccccatctcccttttctctgagagggtgct
cttcctctcccctaaggcatcctcatcccctggggcctctgcaggattag
ggtcatcctttccaactgaggccagacaaggcagtcttctgctacatact
tgctggggacctctgaccagccagtgtatgctcattgtttggtggcttag
tctctgggagctaccaggtgtccaggttagttgagactgttgttttttct
tatggagttgcagtctttttcagtataatccatcctacccctaactctgc
cacaggggtcctgaggtctctgatctcagtctaatgggtggttataagga
tctgaatctgtcttagtcagctgctattagagccctcaaagagaagc
gaattcaaggtaatggtttggttgctcttacatgctttccccttcttgta
attagatagatgttattgtgtgatttgggggtgggagggaaaagactttt
tacagaagcagatatagtcttatacatttccatatatagatatttgaaac
ccgaaactcaatattccactaatattcccccttatactttctacatcaga
gccagtagtaaaaacatctcaacctagcttcagtaacaatttcttttttc
caaatgttttctaagggtcgtggtcattgcctatattccacatctctaaa
ttctttcctagagtggtgattgaatcattaatctgctccagccacaattc
ctgaaagaggtcattattattgtgagtgccagagatacggtccagtgagg
gactggaagcccccttaaagttttcatataattcttagattaagagggat
gtgaggcagcaagaagaatagaaccctgtaacaccatggagtcctcagga
cacatgatccttggggctgtgccacacagaggctcacccttatggctgtg
gtaacccaagggccacattccatgagttctaaagcctttgtaattcctct
tgtatggtcctcggcatgtagacaatcattttttttaaagaaaataaaga
aaaatggacctaagtttttaatctaaccattattttatgctctttactta
cgaggcacaactaactccaaaagaaattagaatcatatttcctcacatga
ggaacccaaagtcacagctctcagtgaactagatgtcccagaaattattc
ttaattttaaataaagccctagctctatttatattgtgtcaccaagtaaa
attgacattcagtggtaattgattaaggctgtgatccatctatcatgaga
agaagcaataaagttgattggaacatcgtctggttttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_74927566_74928095
seq2: B6Ng01-090J07.b_46_575 (reverse)

seq1  AGAACTTAAGAGTTTAGGGGCACCTTTCTTATAAAGTGCTGGCTGGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTAAGAGTTTAGGGGCACCTTTCTTATAAAGTGCTGGCTGGTTTC  50

seq1  TCTCAGGGTTTACTAATTGCTGAAATATTTTTCCTTTACAATAAGAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGGTTTACTAATTGCTGAAATATTTTTCCTTTACAATAAGAAGAA  100

seq1  AATCAAAATGATCAAAGATCTTGACATTTGTAGTGTATTTACTTGTAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAATGATCAAAGATCTTGACATTTGTAGTGTATTTACTTGTAATT  150

seq1  TATTACCAATGTAATCCATCATGCAGCAGATTAATGGTCCCAAATAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACCAATGTAATCCATCATGCAGCAGATTAATGGTCCCAAATAAATA  200

seq1  TTATTCAGATTTGATATTTAATAATATCATAAAGTAACAGACCATATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAGATTTGATATTTAATAATATCATAAAGTAACAGACCATATGAA  250

seq1  ATAAAAGCACATCTCATCCAGTTATCCAGTTAATTTGTGTGTGTGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGCACATCTCATCCAGTTATCCAGTTAATTTGTGTGTGTGTGTGT  300

seq1  GTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  350

seq1  GTGTGTGTGTGTGTGTGTTGAGACAGGGTTTCTCTGTATAGCTCTGGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTTGAGACAGGGTTTCTCTGTATAGCTCTGGCTG  400

seq1  TCCTGGAACTCACTCTGTAGACCAGGTTGGCCTTGAACTCAGAAATCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTCACTCTGTAGACCAGGTTGGCCTTGAACTCAGAAATCCTC  450

seq1  CTGCTTCTGCCTTCCAAGTGCATGCCTCCCAAAGGAATGCACCACCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTGCCTTCCAAGTGCATGCCTCCCAAAGGAATGCACCACCATAT  500

seq1  TTTTTAAAGGACAAGATGACATGTGAATTC  530
      ||||||||||||||||||||||||||||||
seq2  TTTTTAAAGGACAAGATGACATGTGAATTC  530

seq1: chr3_74739795_74740741
seq2: B6Ng01-090J07.g_69_1007

seq1  GAATTCAAGGTAATGGTTTGGTTGCTCTTACATGCTTTCCCCTTCTTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTAATGGTTTGGTTGCTCTTACATGCTTTCCCCTTCTTGTA  50

seq1  ATTAGATAGATGTTATTGTGTGATTTGGGGGTGGGAGGGAAAAGACTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATAGATGTTATTGTGTGATTTGGGGGTGGGAGGGAAAAGACTTTT  100

seq1  TACAGAAGCAGATATAGTCTTATACATTTCCATATATAGATATTTGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAGCAGATATAGTCTTATACATTTCCATATATAGATATTTGAAAC  150

seq1  CCGAAACTCAATATTCCACTAATATTCCCCCTTATACTTTCTACATCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAACTCAATATTCCACTAATATTCCCCCTTATACTTTCTACATCAGA  200

seq1  GCCAGTAGTAAAAACATCTCAACCTAGCTTCAGTAACAATTTCTTTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTAGTAAAAACATCTCAACCTAGCTTCAGTAACAATTTCTTTTTTC  250

seq1  CAAATGTTTTCTAAGGGTCGTGGTCATTGCCTATATTCCACATCTCTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTTTCTAAGGGTCGTGGTCATTGCCTATATTCCACATCTCTAAA  300

seq1  TTCTTTCCTAGAGTGGTGATTGAATCATTAATCTGCTCCAGCCACAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCTAGAGTGGTGATTGAATCATTAATCTGCTCCAGCCACAATTC  350

seq1  CTGAAAGAGGTCATTATTATTGTGAGTGCCAGAGATACGGTCCAGTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGAGGTCATTATTATTGTGAGTGCCAGAGATACGGTCCAGTGAGG  400

seq1  GACTGGAAGCCCCCTTAAAGTTTTCATATAATTCTTAGATTAAGAGGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAAGCCCCCTTAAAGTTTTCATATAATTCTTAGATTAAGAGGGAT  450

seq1  GTGAGGCAGCAAGAAGAATAGAACCCTGTAACACCATGGAGTCCTCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCAGCAAGAAGAATAGAACCCTGTAACACCATGGAGTCCTCAGGA  500

seq1  CACATGATCCTTGGGGCTGTGCCACACAGAGGCTCACCCTTATGGCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGATCCTTGGGGCTGTGCCACACAGAGGCTCACCCTTATGGCTGTG  550

seq1  GTAACCCAAGGGCCACATTCCATGAGTTCTAAAGCCTTTGTAATTCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCCAAGGGCCACATTCCATGAGTTCTAAAGCCTTTGTAATTCCTCT  600

seq1  TGTATGGTCCTCGGCATGTAGACAATCATTTTTTTTAAAGAAAATAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGTCCTCGGCATGTAGACAATCATTTTTTTTAAAGAAAATAAAGA  650

seq1  AAAATGGACCTAAGTTTTTAATCTAACCATTATTTTATGCTCTTTACTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGACCTAAGTTTTTAATCTAACCATTATTTTATGCTCTTTACTTA  700

seq1  CGAGGCACAACTAACTCCAAAAGAAATTAGAATCATATTTCCTCACATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCACAACTAACTCCAAAAGAAATTAGAATCATATTTCCTCACATGA  750

seq1  GGAACCCAAAGGTCACAGCTCTCAGTGAACTAAGATGTCCCAAGAAAATA  800
      |||||||||| |||||||||||||||||||| ||||||||||   |||| 
seq2  GGAACCCAAA-GTCACAGCTCTCAGTGAACT-AGATGTCCCA--GAAATT  796

seq1  ATTCTCAATTTAAAATAAAGCCCTAGCTCTATTTATATTGTGTTCACCAA  850
      ||||| ||||| |||||||||||||||||||||||||||||| |||||||
seq2  ATTCTTAATTTTAAATAAAGCCCTAGCTCTATTTATATTGTG-TCACCAA  845

seq1  GTCAAATTGACATTCAGTGGTATTTGATTAAGGCTGTGATCCATCTATCA  900
      || ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTAAAATTGACATTCAGTGGTAATTGATTAAGGCTGTGATCCATCTATCA  895

seq1  GTGAGAAGATGCAATAAAGTTTGATTTGGAACATCTGTCT-GTTTTAA  947
       |||||||| ||||||||| |||| |||||||||| |||| |||||||
seq2  -TGAGAAGAAGCAATAAAG-TTGA-TTGGAACATC-GTCTGGTTTTAA  939