BAC Information

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BAC

Clone NameB6Ng01-091M01
Chromosome3 (Build37)8 (Build37)
Map Location 92,881,411 - 92,881,82929,898,511 - 29,898,591
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571
Downstream geneCrnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091M01.bB6Ng01-091M01.g
ACCDH903694DH903695
length999266
definitionDH903694|Mus musculus domesticus DNA, BAC clone: B6Ng01-091M01, 5' end.DH903695|Mus musculus domesticus DNA, BAC clone: B6Ng01-091M01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(92,881,411 - 92,881,829)(29,898,511 - 29,898,591)
sequence
gaattcaaataattaaataaaattttgcagcatattccacaccgcattcc
gcaaagttctgggttctcaaatgaaagacagaaactcagccttcatattt
taatattccttaaacagctcaatgtttgggtcacattctaacctccattt
ggctaatccacctccctccaataatcctgagttttcatttactacatttt
gtatttaccttggctgctctagactcagttggtctgccctgttgggcttc
attctctaggttcctacatgacacctgtttctccctgtcctgcaccaatt
tagtcatggaatctcttctttcccacgtttcctgccatggtggatgtcct
ccttctccttcctccttgtctctatccagggaatcccaaaagtctcaact
ctgtctgctctgttcaaactttgtcagcatctttatttccaatcagaccc
aacttagggcaggttttcagaagttatttgtgagtagatattctcatgta
aaccggtttttgggaaaaagaatcagcattcacaatacaagcagttataa
atatgttcaaagctattctctatttttcttccatcaagttcagtgtttcc
atcaagtctgttttaatgttgtgattgtcaattggccttaagttttgtac
attggtaatatggatccagtactattcttcaacttgaaaggatccagtta
gaccagcaccatttttgaagatgctttcttttatctattgtgtattttta
gcttctttttaaaagtaagatctccataggtgtgtgttgatttatgtctg
ggtcttcatttcgatcccattgctcaacgtgtatgtgtttaggagaatac
tttgtggcttttattactgtagcactatggtatacattaaagttagggat
ggtggtacctctggaagttcttttattcatgtattctactgatccatgaa
catgggagaacttttcatctcctgataacttctccctttttccttcctt
agcatgagtagggaagagatacacagaaagccagtcatggctgagtatcc
aatggcatttggtggctactagggaagggagagtcagtttccttaggagg
ggtttgccctagtagcttccctacactctagaagatgtcttgtacttctg
cagtactggcatgcctaaatgaactcagtagattagtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagagagagagagagag
agagagagatagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_92881411_92881829
seq2: B6Ng01-091M01.b_825_1039 (reverse)

seq1  GGAAGGAAAAAGGGAGGAAGTACTGCAGTGGGGATAGGAGCCTTCTAAGC  50
      ||||||||||||||| |||||  | ||  || ||| | |   ||||    
seq2  GGAAGGAAAAAGGGA-GAAGTTAT-CA--GGAGAT-GAAAAGTTCTCCCA  45

seq1  TTCTCAGCTAGATTAGTAGACTGCTGATCACAGATTCCTGAGAAGCCACA  100
      |  |||  | ||| |||||| |                         |||
seq2  TGTTCA--TGGATCAGTAGAAT-------------------------ACA  68

seq1  ACTCTGAGAAGGAAAGAGAATCCTAACTGGCTTTATCATGACTTGTCTTT  150
             |||  |||||                       |||       
seq2  ------TGAATAAAAGA-----------------------ACT-------  82

seq1  GTCTCTATGCAGTTGAGTAGGCACAAGCCTGATTTGGTTAGAGAGTGGCC  200
             | |||      ||| ||                          
seq2  -------TCCAG------AGGTAC--------------------------  93

seq1  CCACCCCATTCCTGTTGTGCTTTAGTGAACCCACTACCCTTCATCCCCGC  250
         | |||| |||      ||||| || |     ||||            
seq2  ---CACCATCCCT----AACTTTAATGTA-----TACC------------  119

seq1  CCCCCCCCACGCTATTATGTGCCCCTCCACTGCCCCATGTCTGGGATATG  300
                                                   |||  
seq2  ---------------------------------------------ATAGT  124

seq1  GACAAATCTCTACTGTCCATTATCTGGCTTGGGAACCCACAAAACAGCAT  350
      |        |||| ||  | ||           || |||||||       
seq2  G--------CTACAGT--AATA----------AAAGCCACAAA-------  147

seq1  TGAATTGGCATACAAACAGACTCATTGATCAATGTAATCGAACTGAAGAC  400
       | |||  | || | ||| || | |||| |||||  |||||| |||||||
seq2  -GTATTCTCCTAAACACATACACGTTGAGCAATGGGATCGAAATGAAGAC  196

seq1  CCAGACATAAATCCACACA  419
      ||||||||||||| |||||
seq2  CCAGACATAAATCAACACA  215

seq1: chr8_29898511_29898591
seq2: B6Ng01-091M01.g_257_337 (reverse)

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTACACACACACACACACA  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTATCTCTCTCTCTCTCTCTCTCTCTCTTACACACACACACACACA  50

seq1  CACACACACACACACACACACACACACACAC  81
      |||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACAC  81