BAC Information

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BAC

Clone NameB6Ng01-092F02
Chromosome3 (Build37)
Map Location 55,638,096 - 55,639,318
singlet/doubletsinglet
Overlap genenone
Upstream gene6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1, Mab21l1
Downstream gene4933417G07Rik, LOC100040139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092F02.bB6Ng01-092F02.g
ACCDH904110DH904111
length1,2151,167
definitionDH904110|Mus musculus domesticus DNA, BAC clone: B6Ng01-092F02, 5' end.DH904111|Mus musculus domesticus DNA, BAC clone: B6Ng01-092F02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattcattttacaatcatttattcacaatttttatgtgtaatcag
tgctatctgaaagacactatttcctaccccagaggtattatgctacataa
aagagtaagagaactacttatcagccttttattcacgtagcatgtgttca
ttcttttagcttcctcacacataaatataaaagatcacccatggtacttt
gatacatgatggagggctgggcatgatggcaggcacctgggacccagtgc
ttgtgaggctgagccaggacggtggtgagcttaaaggctgtctgtcggag
ttatgtactggatcttgcctgctccccatacacacacacacacacacaca
cacacacacacacgacatataaaaatgtgctctgaatattacggtgatga
gtacagcacagtgaggcacaacgcaaataagaaatcacgaggaaaagaat
ccactagaaacaggcaatgtgtcatcaggatttcaaaactaatatgaata
ttagctaagcctcacattaatcacccataggtaggtactatgtgcttgtt
tctctttctctaggctcccatgaccttgcctgaacatccagtatcataga
gaagaatggctatcacctctgtcacggctacagaaatattttttctgctt
gagtccccatcaatttaattttacaattgaagaatagtaagacaaagatg
aacaacccccccccaattttataaatataagaaaatacaagtaaagtaat
taaaatacaaaataaaaacagtacagggcaggctatttcatggaggacta
gtatgtttacattctctttattatgaacttgcaattctggtttggaagta
ccagaggcaggtcgtgacctctcaggatgcatttccttatctgtaaattg
agttgcgacagtacagagccaggcctaatcgctggctgggcatccagagc
ctctttgattggatttgaactctgcttttagtcttatctcctgttatcat
cattctcatactctgcccggtaaaaggttaatttaacatatctcagcttc
ccggatgtcttaatctagtcattctgcactagaatctgaactaacactgc
cagcctagttaataacctcattcataagaagatactgcttttatgtatgt
ttacaaaacataagactggccatgtctcttagattaaggccggagctcct
ttgagaccataggag
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaatttaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctcgat
gcccctcaacagaggaatggattcagaaaacgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctagagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaaaatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacctatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttaatgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatatggctccca
atggaggagctagagaaagtagccagagctaaagggatctgcaccctata
aggtggaacaacattatgactacagtacccgagctcttgactctagctgc
atatatatcaaaagatggctagtcgccatcactgaaagaagggtaatgga
ctgccacttaattggccagtacaggacaccaggcaaaaaggggagttggt
tgggctagggtgagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_55638096_55639318
seq2: B6Ng01-092F02.b_42_1256

seq1  GAATTCATTCATTTTACAATCATTTATTCACAATTTTTATGTGTAATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATTTTACAATCATTTATTCACAATTTTTATGTGTAATCAG  50

seq1  TGCTATCTGAAAGACACTATTTCCTACCCCAGAGGTATTATGCTACATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCTGAAAGACACTATTTCCTACCCCAGAGGTATTATGCTACATAA  100

seq1  AAGAGTAAGAGAACTACTTATCAGCCTTTTATTCACGTAGCATGTGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAAGAGAACTACTTATCAGCCTTTTATTCACGTAGCATGTGTTCA  150

seq1  TTCTTTTAGCTTCCTCACACATAAATATAAAAGATCACCCATGGTACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTAGCTTCCTCACACATAAATATAAAAGATCACCCATGGTACTTT  200

seq1  GATACATGATGGAGGGCTGGGCATGATGGCAGGCACCTGGGACCCAGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATGATGGAGGGCTGGGCATGATGGCAGGCACCTGGGACCCAGTGC  250

seq1  TTGTGAGGCTGAGCCAGGACGGTGGTGAGCTTAAAGGCTGTCTGTCGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGGCTGAGCCAGGACGGTGGTGAGCTTAAAGGCTGTCTGTCGGAG  300

seq1  TTATGTACTGGATCTTGCCTGCTCCCCATACACACACACACACACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTACTGGATCTTGCCTGCTCCCCATACACACACACACACACACACA  350

seq1  CACACACACACACGACATATAAAAATGTGCTCTGAATATTACGGTGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACGACATATAAAAATGTGCTCTGAATATTACGGTGATGA  400

seq1  GTACAGCACAGTGAGGCACAACGCAAATAAGAAATCACGAGGAAAAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCACAGTGAGGCACAACGCAAATAAGAAATCACGAGGAAAAGAAT  450

seq1  CCACTAGAAACAGGCAATGTGTCATCAGGATTTCAAAACTAATATGAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAGAAACAGGCAATGTGTCATCAGGATTTCAAAACTAATATGAATA  500

seq1  TTAGCTAAGCCTCACATTAATCACCCATAGGTAGGTACTATGTGCTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTAAGCCTCACATTAATCACCCATAGGTAGGTACTATGTGCTTGTT  550

seq1  TCTCTTTCTCTAGGCTCCCATGACCTTGCCTGAACATCCAGTATCATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTCTAGGCTCCCATGACCTTGCCTGAACATCCAGTATCATAGA  600

seq1  GAAGAATGGCTATCACCTCTGTCACGGCTACAGAAATATTTTTTCTGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGGCTATCACCTCTGTCACGGCTACAGAAATATTTTTTCTGCTT  650

seq1  GAGTCCCCATCAATTTAATTTTACAATTGAAGAATAGTAAGACAAAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCCATCAATTTAATTTTACAATTGAAGAATAGTAAGACAAAGATG  700

seq1  AACAACCCCCCCCCAATTTTATAAATATAAGAAAATACAAGTAAAGTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCCCCCCCCAATTTTATAAATATAAGAAAATACAAGTAAAGTAAT  750

seq1  TAAAATACAAAATAAAAACAGTACAGGGCAGGCTATTTCATGGAGGACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACAAAATAAAAACAGTACAGGGCAGGCTATTTCATGGAGGACTA  800

seq1  GTATGTTTACATTCTCTTTATTATGAACTTGCAATTCTGGTTTGGAAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTTACATTCTCTTTATTATGAACTTGCAATTCTGGTTTGGAAGTA  850

seq1  CCAGAGGCAGGTCGTGACCTCTCAGGATGCATTTCCTTATCTGTAAAATT  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCAGAGGCAGGTCGTGACCTCTCAGGATGCATTTCCTTATCTGT-AAATT  899

seq1  GAGTTGCGACAGTACAGAGCCAGGCCTAATCGCTGGCTGGGCAATCCAGA  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAGTTGCGACAGTACAGAGCCAGGCCTAATCGCTGGCTGGGC-ATCCAGA  948

seq1  GCCTCTTTGATTGGATTTGAACTCTGCTTTTAGTCTTATCTCCTGTTATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTTGATTGGATTTGAACTCTGCTTTTAGTCTTATCTCCTGTTATC  998

seq1  ATCATTCTCATACTCTGCCCGGTAAAGGGTTAATTTAACATATCTCAGCT  1050
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATCATTCTCATACTCTGCCCGGTAAAAGGTTAATTTAACATATCTCAGCT  1048

seq1  ATCCCCGATGTCTTAATCCTAGGTCATTCCTGCAACTAGAAATCTGAACT  1100
       |||| ||||||||||| ||| |||||| |||| ||||| ||||||||||
seq2  -TCCCGGATGTCTTAAT-CTA-GTCATT-CTGC-ACTAG-AATCTGAACT  1092

seq1  AACACTG-CAGGCTAGTTAATAA-CTCATCCCAATAAGAAG-TACTGCTT  1147
      ||||||| ||| ||||||||||| ||||| |  |||||||| ||||||||
seq2  AACACTGCCAGCCTAGTTAATAACCTCATTC--ATAAGAAGATACTGCTT  1140

seq1  TATAGTAATGTTACCAAAACTAAGGACTGG-CATGCTCTCATAGATTAGA  1196
      | ||   |||||  ||||||  | |||||| |||| |||| ||||||| |
seq2  T-TATGTATGTTTACAAAACATAAGACTGGCCATG-TCTCTTAGATTA-A  1187

seq1  GGACAGAAAGCTCCTTTGAG---CTAGGAG  1223
      || | |  ||||||||||||    ||||||
seq2  GGCCGG--AGCTCCTTTGAGACCATAGGAG  1215