BAC Information

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BAC

Clone NameB6Ng01-092J05
Chromosome3 (Build37)
Map Location 156,839,115 - 156,840,308
singlet/doubletsinglet
Overlap geneNegr1
Upstream geneLOC100040901, 4930570G19Rik, LOC100041152, LOC668853
Downstream geneLOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092J05.bB6Ng01-092J05.g
ACCDH904302DH904303
length1,2611,171
definitionDH904302|Mus musculus domesticus DNA, BAC clone: B6Ng01-092J05, 5' end.DH904303|Mus musculus domesticus DNA, BAC clone: B6Ng01-092J05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagcaccttcatttcttgtgttatgttgaaacagtactttacat
aataataagctccctaaaccaacataaacagctcctcatcccattgaaaa
gagggatgaaaaactactttcaaggtaataaagaaaaacttgtgcgtctg
taatttcttttttctctttttttttttttcaggttgaagaattatataat
cgcaggagaattttatagtgtcttgaggcagacactatggtccttagtta
agagtctgtcatgaactggtctttatctaaacttacaattctgattgaca
tgaaagaataataattccataccacatttcaaaagaataataaggccagg
taaccatgagataactgatcccagttagtgccttcttggtcaaagcttga
atgtgttgattccaaaaggtgaaatgacttggctggacagttttgaaaaa
aaaattattcttttggacacaacaggaaccattaagcaatgtgcaggcag
taagagatcatgagtaacggtggatgctatgcaagagaagttatagtggg
caaatgaggttcctgaagacggtctactgttttgcacagctacaatgggt
gctccctggagaactttgctgtcatgctcctgtctcatgcttaccatcac
tgtgttcctcatttatctggaattgtatgatttggcttggggagaccccc
actgcccatagcatggtgtgattaccttctgggaagcagtccatatgaag
cagtcaatatgaagatgaactttcataatatcatattgtctagatgaatt
aatatttttatggaattcctgattttagtaattttaccatgatagtttgc
tttaaataatttgaagtacttagggaagttggcagaaaatttaaagttag
aatcaaaatagaatataccctgtcatcatagaatagcaaggctaaaacag
cagtacagtgagatttcatgaatcataagcatgtaattggactagcaaga
aaagtaggcttgagacaagttacgatcaagaaaacattcattctaggtgg
atctgaatccctagatttgtggacctccagttttggtgtgcaccatggaa
agaaatgctatgaaaaagagtaataattctattatgagtgatagatgaat
gatacctgttagctgacagactcaacagactagatagtatagattctgat
ccatggtcactctagagacatgcactgtaactggcttctaaccttgtgta
tatatatcgta
gaattctttgctgccaactactcctgcaggtctctatgtaggtcttaatg
acctacatgcacgtgggcacagattacagattctgccttttatatggtgg
gatagtagtctgttgcatgtatgaaacacatttatcagttactggatatt
tttactcatttctttcctggaagggaaaagaaaaaacagctgtcagttag
tgtaccttttgtccacttagtgatggtaagactgttgcatcccatgtctg
cttctttttgtcttgttctctttctctcttcctccattcctctctcttcc
ccccacgcccacgtttctaggtatggaatctatggccttacatatttcca
aagaagctgctacaaaattactgccagccttttcatagtaatcctactaa
gttatattcctactgtgtgtgagggctcctctgtacatgctcccctggat
gtaccatcctcacttttataatatctgttcctattgaggggacttgtatg
ttttgattttcattttcctggtggttagtgatgttgtatatttaccaatg
ttactgttggccatttagatgtcttcttttcaaaatattatatatcacca
tttctttttctttctgcttgccaagttttgagagctctttatacactgta
ggttatacattttctcctactctttgggttttctcttcgatctggttttt
tgtctccagttccttttccattctagctactaacctttcgttacaaatgt
atcaagtttcttatatattctagctactaaccttttgttacaaatacagg
ttgcaaacagtcatttgtgagttgtctctttctgtttgttgttttctttg
cttacagacattctagtttgacaaagccccatctctctatttttcctttc
tttctgtgctttcagggtcctgttcagaaatagccttccactttccagta
tcatgtgagttcagctataggactaaatgacagaaaccccatgaggctag
cccacagcaggtctccccaattgtacactagccccgccccagaagaagga
tgcagtgatgaccttatgaagcatgaacctttacacatctctaaaaaggt
ccattcctaacatccttcataccaacaggagcttcaactgggatgggcca
tagagcaaataaatgctagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_156839115_156840308
seq2: B6Ng01-092J05.g_70_1240

seq1  GAATTCTTTGCTGCCAACTACTCCTGCAGGTCTCTATGTAGGTCTTAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCTGCCAACTACTCCTGCAGGTCTCTATGTAGGTCTTAATG  50

seq1  ACCTACATGCACGTGGGCACAGATTACAGATTCTGCCTTTTATATGGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACATGCACGTGGGCACAGATTACAGATTCTGCCTTTTATATGGTGG  100

seq1  GATAGTAGTCTGTTGCATGTATGAAACACATTTATCAGTTACTGGATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTAGTCTGTTGCATGTATGAAACACATTTATCAGTTACTGGATATT  150

seq1  TTTACTCATTTCTTTCCTGGAAGGGAAAAGAAAAAACAGCTGTCAGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCATTTCTTTCCTGGAAGGGAAAAGAAAAAACAGCTGTCAGTTAG  200

seq1  TGTACCTTTTGTCCACTTAGTGATGGTAAGACTGTTGCATCCCATGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTTTTGTCCACTTAGTGATGGTAAGACTGTTGCATCCCATGTCTG  250

seq1  CTTCTTTTTGTCTTGTTCTCTTTCTCTCTTCCTCCATTCCTCTCTCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTTGTCTTGTTCTCTTTCTCTCTTCCTCCATTCCTCTCTCTTCC  300

seq1  CCCCACGCCCACGTTTCTAGGTATGGAATCTATGGCCTTACATATTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACGCCCACGTTTCTAGGTATGGAATCTATGGCCTTACATATTTCCA  350

seq1  AAGAAGCTGCTACAAAATTACTGCCAGCCTTTTCATAGTAATCCTACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCTGCTACAAAATTACTGCCAGCCTTTTCATAGTAATCCTACTAA  400

seq1  GTTATATTCCTACTGTGTGTGAGGGCTCCTCTGTACATGCTCCCCTGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATTCCTACTGTGTGTGAGGGCTCCTCTGTACATGCTCCCCTGGAT  450

seq1  GTACCATCCTCACTTTTATAATATCTGTTCCTATTGAGGGGACTTGTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATCCTCACTTTTATAATATCTGTTCCTATTGAGGGGACTTGTATG  500

seq1  TTTTGATTTTCATTTTCCTGGTGGTTAGTGATGTTGTATATTTACCAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTTTCATTTTCCTGGTGGTTAGTGATGTTGTATATTTACCAATG  550

seq1  TTACTGTTGGCCATTTAGATGTCTTCTTTTCAAAATATTATATATCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTTGGCCATTTAGATGTCTTCTTTTCAAAATATTATATATCACCA  600

seq1  TTTCTTTTTCTTTCTGCTTGCCAAGTTTTGAGAGCTCTTTATACACTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTCTTTCTGCTTGCCAAGTTTTGAGAGCTCTTTATACACTGTA  650

seq1  GGTTATACATTTTCTCCTACTCTTTGGGTTTTCTCTTCGATCTGGTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATACATTTTCTCCTACTCTTTGGGTTTTCTCTTCGATCTGGTTTTT  700

seq1  TGTCTCCAGTTCCTTTTCCATTCTAGCTACTAACCTTTCGTTACAAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCAGTTCCTTTTCCATTCTAGCTACTAACCTTTCGTTACAAATGT  750

seq1  ATCAAGTTTCTTATATATTCTAGCTACTAACCTTTTGTTACAAATACAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTTTCTTATATATTCTAGCTACTAACCTTTTGTTACAAATACAGG  800

seq1  TTGCAAACAGTCATTTGTGAGTTGTCTC-TTCTGTTTGTTGTTTTCTTTG  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTGCAAACAGTCATTTGTGAGTTGTCTCTTTCTGTTTGTTGTTTTCTTTG  850

seq1  CTTACAGACAATCCTAGTTTGACAAAGCCCCATCTCTCTATTTTTTCCTT  899
      ||||||||| || ||||||||||||||||||||||||||| |||||||||
seq2  CTTACAGAC-ATTCTAGTTTGACAAAGCCCCATCTCTCTA-TTTTTCCTT  898

seq1  TCTTTCCTGTGCTTTCAGGGTCCTGTTCAGAAATAGCCTTCCACTTTCCA  949
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTT-CTGTGCTTTCAGGGTCCTGTTCAGAAATAGCCTTCCACTTTCCA  947

seq1  GTATCATTGTGAGTTTCAGCTATAGGACTAAATGACAGAAACCCCATGAG  999
      |||||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  GTATCA-TGTGAG-TTCAGCTATAGGACTAAATGACAGAAACCCCATGAG  995

seq1  GCTAGCCCACAGCAGGGTTCTCACCAAATGTACACTAGCCACAGCCCCAG  1049
      ||||||||||||||||  |||| |||| |||||||||||| | |||||| 
seq2  GCTAGCCCACAGCAGG--TCTCCCCAATTGTACACTAGCC-CCGCCCCA-  1041

seq1  GAGGAAGGATGGCAGTGAATGACCTTAGGAGGCAATGATACTTTTAACAA  1099
      || ||||||| |||||| ||||||||| || || ||||  ||||  ||| 
seq2  GAAGAAGGAT-GCAGTG-ATGACCTTATGAAGC-ATGAACCTTTACACAT  1088

seq1  CATCATAAAAATGTTCACATCTCAAACATCTATTCATACACTATCAAGAG  1149
      | || |||||| ||   |||  | ||||||  |||||  || | || |||
seq2  C-TC-TAAAAAGGT--CCATTCCTAACATC-CTTCAT--ACCAACAGGAG  1131

seq1  CTTTCAAACTGTGAGTGGCCATAGAGCAAAATATAATTGCTAGAA  1194
      |||   ||||| ||  |||||||||||||   |||| ||||||||
seq2  CTT--CAACTGGGATGGGCCATAGAGCAA---ATAAATGCTAGAA  1171