BAC Information

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BAC

Clone NameB6Ng01-093D02
Chromosome3 (Build37)
Map Location 91,946,174 - 92,027,672
singlet/doubletdoublet
Overlap geneSprr2a, LOC100042999
Upstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik
Downstream geneLOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093D02.bB6Ng01-093D02.g
ACCDH904746DH904747
length9801,088
definitionDH904746|Mus musculus domesticus DNA, BAC clone: B6Ng01-093D02, 5' end.DH904747|Mus musculus domesticus DNA, BAC clone: B6Ng01-093D02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,946,174 - 91,947,164)(92,026,573 - 92,027,672)
sequence
gaattcatcacctctcctttgggtatgggaggaccccagtgcgctggaac
aataaattcctcttgctttttgcatcgattcctagctccatgtggtttac
tcaggggggtccccggtaagctaaaggctcactagagtcttacacatgtt
tgattttatttgatagaaagtataatttatgaaatgtagtttaaaaattg
gtatgactctctggggaggcagctctttaaatgaaactctaaaatgggta
atgctcactctagtccttgttattcaaaataacaagaaattttaacaaaa
caaaaccctcccagctctactcagtattggagttgatacagctatattta
ggacagaagatgcacaagaacaaccataatcattgtccagatgcaactca
cccctttctgttggtagtgaaactgacaagcagtctactgaggtggatgg
taaagctgtgcttgggaaggtggacttttcctctcgttcctctgctgagc
tctgggaagctgggggtaggttggggatcagctccatttatgacatcatt
acagcatcatgagtagtgaatgttgggtgacttcaggacttctaactcaa
gtcctggacatgagaatctagctatgattactcaactctctgtctagact
tttctgatctcttaaattagatgctgaaagaatcaggctactgtgaagaa
tcctgagtgctgagggcagaaggctcattgctgctaggagtggaaaagct
ggctaattgtctgcctgtctgttccctccttagattctcagtcatttccc
ctgcatctcctagaaagtttgtgggatcactcactcacttccactctttt
ttaccctgattttattaataggaggtttgaaatctcttttatcatctcat
atttgctagccaagttcaagataatttttagcgattttccatgtgtctgt
agattcttttctctgtctctgctctgtctc
gaattctcagctattgcttcagtggtctatcacctgctatctctgctctg
caatcatgaattcaaacaatctggaggcataagcctcaaataaattcttt
cccatataaataaataaataaattaattaattaattaatagaatacatct
cttaatattgtatgacatgtcaaagaaactaatctgtaataactgtagac
aaatatggtatattattgaatttagctaagaagaggaaatcaaatactat
ttgatttcaattatatttcatctataggaagttgatatcacaaaggttta
tacaatgatgttggtttccatgggaacattatgggtgagagaaggatgtg
gaaaagtttctgaactaaatttcaatcaattcaagcatgagttcaatgaa
gtattctatatgttaaaatatctatcaaatataattttgttttcaccata
aaagatgataaatgttccaggtatgaaatgttaatctgaatcattgtacc
cctctttatatatactatattgaaatacattaaaaatatagaagaaatat
ccaattaaaagtaatttgatactataagagacccttatcacaatgacata
cacagatagaagttgtaaaaacccatggggattgagttatttccttttaa
atgattataaaatcaaacaatatataaaactaaaagttcttagtattgaa
actatcagaacacagaatttaaagcaaaggcagttataacatatttatag
gtatgaatgcctacaacatccaatgtgggattacagggttctacctttag
acaaagaagtataggaaagtaatgactctagcaaaatggcattggtccct
tctttggatgacatggtcagccttaaaactagtggatcaggaatttgtat
ttatatatttttacgcacatgtgtgcaacacaaataacagcagaaaagga
ggtagcacatagtgttgtgacacggtggaagtgatcagggtacctagtcg
aagagactgggaggaataagatgggctaaagtattgtaaggtttttttca
atcaaagcttaattaattaaatattattttaaataatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_91946174_91947164
seq2: B6Ng01-093D02.b_46_1025

seq1  GAATTCATCACCTCTCCTTTGGGTATGGGAGGACCCCAGTGCGCTGGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACCTCTCCTTTGGGTATGGGAGGACCCCAGTGCGCTGGAAC  50

seq1  AATAAATTCCTCTTGCTTTTTGCATCGATTCCTAGCTCCATGTGGTTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTCCTCTTGCTTTTTGCATCGATTCCTAGCTCCATGTGGTTTAC  100

seq1  TCAGGGGGGTCCCCGGTAAGCTAAAGGCTCACTAGAGTCTTACACATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGGGTCCCCGGTAAGCTAAAGGCTCACTAGAGTCTTACACATGTT  150

seq1  TGATTTTATTTGATAGAAAGTATAATTTATGAAATGTAGTTTAAAAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTATTTGATAGAAAGTATAATTTATGAAATGTAGTTTAAAAATTG  200

seq1  GTATGACTCTCTGGGGAGGCAGCTCTTTAAATGAAACTCTAAAATGGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGACTCTCTGGGGAGGCAGCTCTTTAAATGAAACTCTAAAATGGGTA  250

seq1  ATGCTCACTCTAGTCCTTGTTATTCAAAATAACAAGAAATTTTAACAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCACTCTAGTCCTTGTTATTCAAAATAACAAGAAATTTTAACAAAA  300

seq1  CAAAACCCTCCCAGCTCTACTCAGTATTGGAGTTGATACAGCTATATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCCTCCCAGCTCTACTCAGTATTGGAGTTGATACAGCTATATTTA  350

seq1  GGACAGAAGATGCACAAGAACAACCATAATCATTGTCCAGATGCAACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAAGATGCACAAGAACAACCATAATCATTGTCCAGATGCAACTCA  400

seq1  CCCCTTTCTGTTGGTAGTGAAACTGACAAGCAGTCTACTGAGGTGGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTCTGTTGGTAGTGAAACTGACAAGCAGTCTACTGAGGTGGATGG  450

seq1  TAAAGCTGTGCTTGGGAAGGTGGACTTTTCCTCTCGTTCCTCTGCTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTGTGCTTGGGAAGGTGGACTTTTCCTCTCGTTCCTCTGCTGAGC  500

seq1  TCTGGGAAGCTGGGGGTAGGTTGGGGATCAGCTCCATTTATGACATCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAAGCTGGGGGTAGGTTGGGGATCAGCTCCATTTATGACATCATT  550

seq1  ACAGCATCATGAGTAGTGAATGTTGGGTGACTTCAGGACTTCTAACTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATCATGAGTAGTGAATGTTGGGTGACTTCAGGACTTCTAACTCAA  600

seq1  GTCCTGGACATGAGAATCTAGCTATGATTACTCAACTCTCTGTCTAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGACATGAGAATCTAGCTATGATTACTCAACTCTCTGTCTAGACT  650

seq1  TTTCTGATCTCTTAAATTAGATGCTGAAAGAATCAGGCTACTGTGAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATCTCTTAAATTAGATGCTGAAAGAATCAGGCTACTGTGAAGAA  700

seq1  TCCTGAGTGCTGAGGGCAGAAGGCTCATTGCTGCTAGGAGTGGAAAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTGCTGAGGGCAGAAGGCTCATTGCTGCTAGGAGTGGAAAAGCT  750

seq1  GGCTAATTGTCTGCCTGTCTGTTCCCTCCTTAGATTCTCAGTCATTTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATTGTCTGCCTGTCTGTTCCCTCCTTAGATTCTCAGTCATTTCCC  800

seq1  CTGCATCTCCTAGAAAGTTTGTGGGATCACTCACTCACTTCCACTCTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCTCCTAGAAAGTTTGTGGGATCACTCACTCACTTCCACTCTTTT  850

seq1  TTACCCTGATTTTATTAATAGGAGGTTTTGAAATCTCTTTTATCATCTCA  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTACCCTGATTTTATTAATAGGAGG-TTTGAAATCTCTTTTATCATCTCA  899

seq1  TATTTGCTAGCCCAAGTCCAAAGATTATTTTTAGCGATTTTTCCAATGTG  950
      |||||||||| |||||| | ||||| |||||||||||||||  | |||||
seq2  TATTTGCTAG-CCAAGTTC-AAGATAATTTTTAGCGATTTT--CCATGTG  945

seq1  TCTGTATGAATTCTTTTTCTCTTGTTCTCTGTCTCTGTCTC  991
      ||||||   |||| ||||||||   |||||| |||||||||
seq2  TCTGTA--GATTC-TTTTCTCT--GTCTCTG-CTCTGTCTC  980

seq1: chr3_92026573_92027672
seq2: B6Ng01-093D02.g_67_1154 (reverse)

seq1  AATTA--TATTTTAAAATTTA---AATTAAGCTTTTGATTGAAAAAAAAA  45
      |||||  ||   ||| |||||   |||||||| ||||||||    |||||
seq2  AATTATTTAAAATAATATTTAATTAATTAAGC-TTTGATTG----AAAAA  45

seq1  AACCTTACATAACTTTAGCCCCATCTTTATTCCTTCCAGTCTCTTCTGAC  95
      |||||||||  ||||||| |||||| |||||||| ||||||||||| |||
seq2  AACCTTACAATACTTTAG-CCCATC-TTATTCCTCCCAGTCTCTTC-GAC  92

seq1  TAGGTTCCCCTGATCACTTCCCACGTGTCCCCAACACTTATGTTGCTAAC  145
      |||| | ||||||||||||||  ||||| | |||||| |||| |||| ||
seq2  TAGG-TACCCTGATCACTTCCACCGTGT-CACAACAC-TATG-TGCT-AC  137

seq1  CTCCTTTTCTTGCTGTTATTTTGTGTTGCACACATGTGCGTAAAAATATA  195
      ||||||||| |||||||| |||||||||||||||||||||||||||||||
seq2  CTCCTTTTC-TGCTGTTA-TTTGTGTTGCACACATGTGCGTAAAAATATA  185

seq1  TAAATACAAATTCCTGATTCCACTAGTTTTAAGGCTGACCATGTTCATCC  245
      ||||||||||||||||| ||||||||||||||||||||||||| ||||||
seq2  TAAATACAAATTCCTGA-TCCACTAGTTTTAAGGCTGACCATG-TCATCC  233

seq1  AAAGAAGGGACCAATGCCATTTTGCTAGAGTCATTACTTTCCTATACTTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGGACCAATGCCATTTTGCTAGAGTCATTACTTTCCTATACTTC  283

seq1  TTTGTCTAAAGGTAGAACCCTGTAATCCCACATTGGATGTTGTAGGCATT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTAAAGGTAGAACCCTGTAATCCCACATTGGATGTTGTAGGCATT  333

seq1  CATACCTATAAATATGTTATAACTGCCTTTGCTTTAAATTCTGTGTTCTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTATAAATATGTTATAACTGCCTTTGCTTTAAATTCTGTGTTCTG  383

seq1  ATAGTTTCAATACTAAGAACTTTTAGTTTTATATATTGTTTGATTTTATA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTCAATACTAAGAACTTTTAGTTTTATATATTGTTTGATTTTATA  433

seq1  ATCATTTAAAAGGAAATAACTCAATCCCCATGGGTTTTTACAACTTCTAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTAAAAGGAAATAACTCAATCCCCATGGGTTTTTACAACTTCTAT  483

seq1  CTGTGTATGTCATTGTGATAAGGGTCTCTTATAGTATCAAATTACTTTTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATGTCATTGTGATAAGGGTCTCTTATAGTATCAAATTACTTTTA  533

seq1  ATTGGATATTTCTTCTATATTTTTAATGTATTTCAATATAGTATATATAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATATTTCTTCTATATTTTTAATGTATTTCAATATAGTATATATAA  583

seq1  AGAGGGGTACAATGATTCAGATTAACATTTCATACCTGGAACATTTATCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGTACAATGATTCAGATTAACATTTCATACCTGGAACATTTATCA  633

seq1  TCTTTTATGGTGAAAACAAAATTATATTTGATAGATATTTTAACATATAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATGGTGAAAACAAAATTATATTTGATAGATATTTTAACATATAG  683

seq1  AATACTTCATTGAACTCATGCTTGAATTGATTGAAATTTAGTTCAGAAAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTCATTGAACTCATGCTTGAATTGATTGAAATTTAGTTCAGAAAC  733

seq1  TTTTCCACATCCTTCTCTCACCCATAATGTTCCCATGGAAACCAACATCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCACATCCTTCTCTCACCCATAATGTTCCCATGGAAACCAACATCA  783

seq1  TTGTATAAACCTTTGTGATATCAACTTCCTATAGATGAAATATAATTGAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAAACCTTTGTGATATCAACTTCCTATAGATGAAATATAATTGAA  833

seq1  ATCAAATAGTATTTGATTTCCTCTTCTTAGCTAAATTCAATAATATACCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATAGTATTTGATTTCCTCTTCTTAGCTAAATTCAATAATATACCA  883

seq1  TATTTGTCTACAGTTATTACAGATTAGTTTCTTTGACATGTCATACAATA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTCTACAGTTATTACAGATTAGTTTCTTTGACATGTCATACAATA  933

seq1  TTAAGAGATGTATTCTATTAATTAATTAATTAATTTATTTATTTATTTAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGATGTATTCTATTAATTAATTAATTAATTTATTTATTTATTTAT  983

seq1  ATGGGAAAGAATTTATTTGAGGCTTATGCCTCCAGATTGTTTGAATTCAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAAGAATTTATTTGAGGCTTATGCCTCCAGATTGTTTGAATTCAT  1033

seq1  GATTGCAGAGCAGAGATAGCAGGTGATAGACCACTGAAGCAATAGCTGAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCAGAGCAGAGATAGCAGGTGATAGACCACTGAAGCAATAGCTGAG  1083

seq1  AATTC  1100
      |||||
seq2  AATTC  1088