BAC Information

Click to search

BAC

Clone NameB6Ng01-093D15
Chromosome3 (Build37)
Map Location 39,679,693 - 39,728,900
singlet/doubletdoublet
Overlap geneLOC100041458
Upstream geneFat4, LOC100041432, LOC100040853, LOC100041443
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093D15.bB6Ng01-093D15.g
ACCDH904772DH904773
length1,1201,128
definitionDH904772|Mus musculus domesticus DNA, BAC clone: B6Ng01-093D15, 5' end.DH904773|Mus musculus domesticus DNA, BAC clone: B6Ng01-093D15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,727,765 - 39,728,900)(39,679,693 - 39,680,833)
sequence
gaattcctagatcctgaaaatgagcccatcaaagtccttgctattaatga
attcaaatgtagacttacaattctttaagattacaagttattttaagaat
taaaggctgcatctttaccacaacttcctaccagctcctcaatatggctg
gcatggtttcctccctctacaatcaaccttttcatttcaattttatcaac
tctgcttctatataatttgtttttgcttgacatgcatgtggctaaaggac
tataaaatatttaattgtcataaaaccaaaccaatgagagtgcagcgttc
ccagagttgaacatatcctctttataggttttggttcatgacactctttc
tcactcaggtttaacggcttctcttggcatcaaaattgctttatcttagc
aacaataaatacacatcttccttcttaagaatggcagcagttttattttc
tttcccttgccattcacaaggttcctgatacagggaaacagaagatgaaa
ggaggactagagagagaactgggaagtctaaggcactcgatgaagcttgt
catgcatgctcacagttcagcatccagcaaacacacagagattgcagcac
ctgtccttgactcatacctctgcgatctgcagttctgagctaagtaagtc
cctccaccactgtttcacacacagcctcactcctgtatcatggtctatta
tcaccctgtgaggatgtccttcacactacctaaggatagttacattaaag
ataatgtttttaaaaatttctcactggtactgaggattgaaaaatctagt
ctcctcataccaggccagggctccatcactgaaatacagcccctgcctaa
ggaaacaataaagtaacttatttactcaagaagaaagacataagccaaca
taaaactctaagttaaatatatagcaaatttgaaactgaaataattatct
cattgatttgaaactttattttttttatttaaggaaaatgaaagatctac
agtcggtattagctgatgtgtagtgggaaggacaagagcaccttgaaatg
actacatgttttttggcaagacaaagtcaataattgatctggtgaattgt
ctgattcatgtaatttctaa
gaattcactggatacatagaataactgacacaatgtgggaaacagcagac
attcagtggcttctttgcttctgtgaccagctgtgaacagtagactgtga
acaaattgagacctatatgaaataccgtgtgcgggagaaagaagccagga
aaacaaaataataatatttcactgaatttattcacaagctagcctaacac
tatctgagtctcttagcttccataattaggagaaagaagcattagaatat
gtggtagggtagatccaggagctctgaaacaaaattctaggaggagtgtc
agccatcaaatatcagtatgcttagcaagacagagtattctagcaaggaa
agtcctgcagtcacccaagacactattcaaggaaagctctaaacaaattt
agaagaatcctttaaaagatgattatgatgagtccacagagaaaataatt
tgtggaaagttctgctttaccacacacgtgccagccatatcaactaccgg
agaaaataggcaactcacacaagtgaactggtgggctctggcagtgtttg
cctgcatggttgttaactcatttttcctgtatctgcacaacgagccttga
caatacagatggtgttgcataacctttcagtcccaaacaaatgaactaat
aatgcaagacacgatgagagagctatccggttactgaattgttgcagaat
agttccaatagcatctgattctcctatatttagacagtagctccaaattt
ctaattgccaattaaataaaatgtaaattgcttttgacaaattaatgcta
tactacactattatacaacatatggagatattatcaaattaacaaaatct
atcattaaatatagtaatgaaatatataatttgcttctgataataaaagc
tctagtattagaaaattaataaatggagatcatgccaattcaaagaaagg
aaaaaatgaacaggtagagtttctctagcatcacaggccgtggggacagc
ccagaagtgtgtgatgttttgtttatcagaataaggtggagatttttcat
tagaacttgaggcttgcctcaacaagctcatttatttgcaattcagagag
tgaattatccatgaataattccaggcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_39727765_39728900
seq2: B6Ng01-093D15.b_41_1160 (reverse)

seq1  TTAGAAATTAACATGAAATCAGACAAATTTCA-CAGATCAAATTATTTGA  49
      ||||||||| ||||| ||||||||||  |||| |||||| ||||| ||||
seq2  TTAGAAATT-ACATG-AATCAGACAA--TTCACCAGATC-AATTA-TTGA  44

seq1  CTTTTGTCTTGCCAAAAAACATGTAGTCATTTCAAGGTTGCTCTTTGTCC  99
      | ||||||||||||||||||||||||||||||||||| ||||| |||| |
seq2  C-TTTGTCTTGCCAAAAAACATGTAGTCATTTCAAGG-TGCTC-TTGT-C  90

seq1  CTTCCCACTTACACATCAGCTTAATACCGACCTTGTAGATCTTTTCAATT  149
      |||||||| ||||||||||| ||||||||||  |||||||| |||||  |
seq2  CTTCCCAC-TACACATCAGC-TAATACCGAC--TGTAGATC-TTTCA--T  133

seq1  TTTCCTTAAATAAAAAAAATAAAGTTTCAAATCAATGAGATAATTATTTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTAAATAAAAAAAATAAAGTTTCAAATCAATGAGATAATTATTTC  183

seq1  AGTTTCAAATTTGCTATATATTTAACTTAGAGTTTTATGTTGGCTTATGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAAATTTGCTATATATTTAACTTAGAGTTTTATGTTGGCTTATGT  233

seq1  CTTTCTTCTTGAGTAAATAAGTTACTTTATTGTTTCCTTAGGCAGGGGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCTTGAGTAAATAAGTTACTTTATTGTTTCCTTAGGCAGGGGCT  283

seq1  GTATTTCAGTGATGGAGCCCTGGCCTGGTATGAGGAGACTAGATTTTTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCAGTGATGGAGCCCTGGCCTGGTATGAGGAGACTAGATTTTTCA  333

seq1  ATCCTCAGTACCAGTGAGAAATTTTTAAAAACATTATCTTTAATGTAACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAGTACCAGTGAGAAATTTTTAAAAACATTATCTTTAATGTAACT  383

seq1  ATCCTTAGGTAGTGTGAAGGACATCCTCACAGGGTGATAATAGACCATGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTAGGTAGTGTGAAGGACATCCTCACAGGGTGATAATAGACCATGA  433

seq1  TACAGGAGTGAGGCTGTGTGTGAAACAGTGGTGGAGGGACTTACTTAGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAGTGAGGCTGTGTGTGAAACAGTGGTGGAGGGACTTACTTAGCT  483

seq1  CAGAACTGCAGATCGCAGAGGTATGAGTCAAGGACAGGTGCTGCAATCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGCAGATCGCAGAGGTATGAGTCAAGGACAGGTGCTGCAATCTC  533

seq1  TGTGTGTTTGCTGGATGCTGAACTGTGAGCATGCATGACAAGCTTCATCG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTTGCTGGATGCTGAACTGTGAGCATGCATGACAAGCTTCATCG  583

seq1  AGTGCCTTAGACTTCCCAGTTCTCTCTCTAGTCCTCCTTTCATCTTCTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTTAGACTTCCCAGTTCTCTCTCTAGTCCTCCTTTCATCTTCTGT  633

seq1  TTCCCTGTATCAGGAACCTTGTGAATGGCAAGGGAAAGAAAATAAAACTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGTATCAGGAACCTTGTGAATGGCAAGGGAAAGAAAATAAAACTG  683

seq1  CTGCCATTCTTAAGAAGGAAGATGTGTATTTATTGTTGCTAAGATAAAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATTCTTAAGAAGGAAGATGTGTATTTATTGTTGCTAAGATAAAGC  733

seq1  AATTTTGATGCCAAGAGAAGCCGTTAAACCTGAGTGAGAAAGAGTGTCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGATGCCAAGAGAAGCCGTTAAACCTGAGTGAGAAAGAGTGTCAT  783

seq1  GAACCAAAACCTATAAAGAGGATATGTTCAACTCTGGGAACGCTGCACTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAAACCTATAAAGAGGATATGTTCAACTCTGGGAACGCTGCACTC  833

seq1  TCATTGGTTTGGTTTTATGACAATTAAATATTTTATAGTCCTTTAGCCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGTTTGGTTTTATGACAATTAAATATTTTATAGTCCTTTAGCCAC  883

seq1  ATGCATGTCAAGCAAAAACAAATTATATAGAAGCAGAGTTGATAAAATTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTCAAGCAAAAACAAATTATATAGAAGCAGAGTTGATAAAATTG  933

seq1  AAATGAAAAGGTTGATTGTAGAGGGAGGAAACCATGCCAGCCATATTGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAAGGTTGATTGTAGAGGGAGGAAACCATGCCAGCCATATTGAG  983

seq1  GAGCTGGTAGGAAGTTGTGGTAAAGATGCAGCCTTTAATTCTTAAAATAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGTAGGAAGTTGTGGTAAAGATGCAGCCTTTAATTCTTAAAATAA  1033

seq1  CTTGTAATCTTAAAGAATTGTAAGTCTACATTTGAATTCATTAATAGCAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAATCTTAAAGAATTGTAAGTCTACATTTGAATTCATTAATAGCAA  1083

seq1  GGACTTTGATGGGCTCATTTTCAGGATCTAGGAATTC  1136
      |||||||||||||||||||||||||||||||||||||
seq2  GGACTTTGATGGGCTCATTTTCAGGATCTAGGAATTC  1120

seq1: chr3_39679693_39680833
seq2: B6Ng01-093D15.g_68_1195

seq1  GAATTCACTGGATACATAGAATAACTGACACAATGTGGGAAACAGCAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGATACATAGAATAACTGACACAATGTGGGAAACAGCAGAC  50

seq1  ATTCAGTGGCTTCTTTGCTTCTGTGACCAGCTGTGAACAGTAGACTGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGGCTTCTTTGCTTCTGTGACCAGCTGTGAACAGTAGACTGTGA  100

seq1  ACAAATTGAGACCTATATGAAATACCGTGTGCGGGAGAAAGAAGCCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTGAGACCTATATGAAATACCGTGTGCGGGAGAAAGAAGCCAGGA  150

seq1  AAACAAAATAATAATATTTCACTGAATTTATTCACAAGCTAGCCTAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAATAATAATATTTCACTGAATTTATTCACAAGCTAGCCTAACAC  200

seq1  TATCTGAGTCTCTTAGCTTCCATAATTAGGAGAAAGAAGCATTAGAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAGTCTCTTAGCTTCCATAATTAGGAGAAAGAAGCATTAGAATAT  250

seq1  GTGGTAGGGTAGATCCAGGAGCTCTGAAACAAAATTCTAGGAGGAGTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGGGTAGATCCAGGAGCTCTGAAACAAAATTCTAGGAGGAGTGTC  300

seq1  AGCCATCAAATATCAGTATGCTTAGCAAGACAGAGTATTCTAGCAAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCAAATATCAGTATGCTTAGCAAGACAGAGTATTCTAGCAAGGAA  350

seq1  AGTCCTGCAGTCACCCAAGACACTATTCAAGGAAAGCTCTAAACAAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGCAGTCACCCAAGACACTATTCAAGGAAAGCTCTAAACAAATTT  400

seq1  AGAAGAATCCTTTAAAAGATGATTATGATGAGTCCACAGAGAAAATAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATCCTTTAAAAGATGATTATGATGAGTCCACAGAGAAAATAATT  450

seq1  TGTGGAAAGTTCTGCTTTACCACACACGTGCCAGCCATATCAACTACCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAAGTTCTGCTTTACCACACACGTGCCAGCCATATCAACTACCGG  500

seq1  AGAAAATAGGCAACTCACACAAGTGAACTGGTGGGCTCTGGCAGTGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAGGCAACTCACACAAGTGAACTGGTGGGCTCTGGCAGTGTTTG  550

seq1  CCTGCATGGTTGTTAACTCATTTTTCCTGTATCTGCACAACGAGCCTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATGGTTGTTAACTCATTTTTCCTGTATCTGCACAACGAGCCTTGA  600

seq1  CAATACAGATGGTGTTGCATAACCTTTCAGTCCCAAACAAATGAACTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAGATGGTGTTGCATAACCTTTCAGTCCCAAACAAATGAACTAAT  650

seq1  AATGCAAGACACGATGAGAGAGCTATCCGGTTACTGAATTGTTGCAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAGACACGATGAGAGAGCTATCCGGTTACTGAATTGTTGCAGAAT  700

seq1  AGTTCCAATAGCATCTGATTCTCCTATATTTAGACAGTAGCTCCAAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAATAGCATCTGATTCTCCTATATTTAGACAGTAGCTCCAAATTT  750

seq1  CTAATTGCCAATT-AATAAAATGTAAATTGCTTTTGACAAATTAATGCTA  799
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTAATTGCCAATTAAATAAAATGTAAATTGCTTTTGACAAATTAATGCTA  800

seq1  TACTACACTATTATACAACATATGGAGATATTATCAAATTAACAAAATCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACACTATTATACAACATATGGAGATATTATCAAATTAACAAAATCT  850

seq1  ATCATTTAAAATATAGTAATGAAATATATAATTTGCTTCTGATAATAAAA  899
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATT--AAATATAGTAATGAAATATATAATTTGCTTCTGATAATAAAA  898

seq1  GCTCTAGTATTAGAAAATTAATAAATGGAGATCATGCCAATTCAAAGAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGTATTAGAAAATTAATAAATGGAGATCATGCCAATTCAAAGAAA  948

seq1  GAAAAAAATGAACAAGGTAGAGTTTTCTCTTAGCATCCACAGGCCGTGGG  999
      | ||||||||||| |||||||| |||||| |||||| |||||||||||||
seq2  GGAAAAAATGAAC-AGGTAGAG-TTTCTC-TAGCAT-CACAGGCCGTGGG  994

seq1  GACAGCCCCAGAGGTTGTGTGATGTTTTGTTTATCAGAATAAGGTGGAGA  1049
      ||||| |||||| | |||||||||||||||||||||||||||||||||||
seq2  GACAG-CCCAGAAG-TGTGTGATGTTTTGTTTATCAGAATAAGGTGGAGA  1042

seq1  TTTTTTTCATTAG-ACTTGAGCTTTGCCTCAACAAAGCTCATTATATTGC  1098
        ||||||||||| |||||||  |||||||||| |||||||||   ||||
seq2  --TTTTTCATTAGAACTTGAGGCTTGCCTCAAC-AAGCTCATTTATTTGC  1089

seq1  AATTTCAAGAGAGTGAAATTATCTATGATTACATCCCAGGCTA  1141
      ||||   |||||||| ||||||| |||| || || ||||||||
seq2  AATT--CAGAGAGTG-AATTATCCATGAATA-ATTCCAGGCTA  1128