BAC Information

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BAC

Clone NameB6Ng01-094A10
Chromosome3 (Build37)
Map Location 52,119,691 - 52,208,671
singlet/doubletdoublet
Overlap geneFoxo1
Upstream geneElf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1
Downstream geneLOC100039762, LOC100039832, Cog6, Lhfp, LOC100039808, LOC666413
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094A10.bB6Ng01-094A10.g
ACCDH905354DH905355
length1,115440
definitionDH905354|Mus musculus domesticus DNA, BAC clone: B6Ng01-094A10, 5' end.DH905355|Mus musculus domesticus DNA, BAC clone: B6Ng01-094A10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,207,541 - 52,208,671)(52,119,691 - 52,120,124)
sequence
gaattccttctgaaattgccctggctttctttttttctcagccccttgtg
agaacacaggaaaccctgcttccccaatcctgaaatatctgcctcaggaa
ggaaaggacattgtctttccagggccgctcgcttgtgaactggccccatg
gccttctttgtaaatacaagacagaagcaaaccaatttggacattccttg
caaacagcaagtttgaaatataataagcaagtcaacgtaagggcagggca
aggggacacgaaaccaatacaaaatgtagagactgtaggctacaagcagc
agaggtgttttgttcttatttggtttactggttggagcagggtgcttatt
caaggcagtaatcattcaaaattcttttcctattccagaaatcatttatc
aatttacctttgacaagatcaacataaaattgatttctatgctttataga
aagcagtcaagaggtcagagagttggctcaggtattaagacacctgttgg
ggggctggagagatggcttaaccactgggttaagagcactcaatgttctt
ccagagctcctgagttcaattcccacaaccacatggtgactcacaaacat
ctgtaatgagattagatgccctcttctggtgtgtctgaagacagatacaa
aatatatatatatatatatatttttttttttaaaaaaagaaaaaaaagat
gcttgttgctcttgcagacgatctgggttcaagtcccagtgcccacatga
tggttcacaaccatctatacctccagtttcagggaatctgacaccgtctt
ctgacatctgtagatctatgaatgcatgcacgaggtacacacatacagtc
atgttggcaaaccggtcacacatgcaaaatgaactaaatttttaaataaa
aaatttaaatttaaatcttaaattatttttaaataaatttacttttatgc
tgtatggaaaacatcagggactggagggagctcagagttaacatccctga
ctgctctctagagactgggctcaatttctggcgcccacatgtgctcacaa
ttgctgtaatgcatacaaactttaagtcatatatttttatgaacatcttt
taaaataaaaaggca
gctcgacttcatctgggagctgtgttcccagccagaaaggttccgtttgt
ttttcacagtgctactcactggaggtttattgctgttagtatattttgtt
tgctttcgtttgtgattatggtttattttgtttatggtgatgtttgatct
ccagtagaaatgatggagcatgacttgataaattaagcagtttgcccctt
tatctatctgcatatatcttacgaagaactttgcatttacttttaatgta
tttaagggccagagagattgtcttgtcagcaggtaaagttgttgctgagc
aagccttgtgacaagtttggtccctagaaactgtgtgacatggaagaaga
gaagcagttccacacacctccatgtgtgatggcatgcacagctaaccgtg
agagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_52207541_52208671
seq2: B6Ng01-094A10.b_46_1160 (reverse)

seq1  TGCCTATTTATTTATAAAAGATGTTCATAAAATATAATTGAACTTAAAGT  50
      ||||| ||||||| |||||||||||||||||| |||  || |||||||||
seq2  TGCCTTTTTATTT-TAAAAGATGTTCATAAAA-ATATATG-ACTTAAAGT  47

seq1  TTGTATGCAATTACAGGCAATTGTGAGCCACAATGTGGGCGCCAGAAATT  100
      |||||||| |||||| ||||||||||| ||| ||||||||||||||||||
seq2  TTGTATGC-ATTACA-GCAATTGTGAG-CAC-ATGTGGGCGCCAGAAATT  93

seq1  GAGCCCAGTTCCTCTAGAAGAGCAGTCAGGGATGTTAACTCCTGAGCCTT  150
      |||||||||  |||||| |||||||||||||||||||||| ||||||  |
seq2  GAGCCCAGT--CTCTAG-AGAGCAGTCAGGGATGTTAACT-CTGAGC--T  137

seq1  CCCTCCAGTCCCTTGGATGTTTTCCATACAGCATAAAAGTAAATTTTATT  200
      |||||||||||||  |||||||||||||||||||||||||||| ||||||
seq2  CCCTCCAGTCCCT--GATGTTTTCCATACAGCATAAAAGTAAA-TTTATT  184

seq1  TAAAAATAATTTAAGATTTAAATTTAAATTTTTTATTTAAAAATTTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAATTTAAGATTTAAATTTAAATTTTTTATTTAAAAATTTAGTT  234

seq1  CATTTTGCATGTGTGACCGGTTTGCCAACATGACTGTATGTGTGTACCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGCATGTGTGACCGGTTTGCCAACATGACTGTATGTGTGTACCTC  284

seq1  GTGCATGCATTCATAGATCTACAGATGTCAGAAGACGGTGTCAGATTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGCATTCATAGATCTACAGATGTCAGAAGACGGTGTCAGATTCCC  334

seq1  TGAAACTGGAGGTATAGATGGTTGTGAACCATCATGTGGGCACTGGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTGGAGGTATAGATGGTTGTGAACCATCATGTGGGCACTGGGACT  384

seq1  TGAACCCAGATCGTCTGCAAGAGCAACAAGCATCTTTTTTTTCTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCAGATCGTCTGCAAGAGCAACAAGCATCTTTTTTTTCTTTTTTT  434

seq1  AAAAAAAAAAATATATATATATATATATATTTTGTATCTGTCTTCAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAATATATATATATATATATATTTTGTATCTGTCTTCAGACA  484

seq1  CACCAGAAGAGGGCATCTAATCTCATTACAGATGTTTGTGAGTCACCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAAGAGGGCATCTAATCTCATTACAGATGTTTGTGAGTCACCATG  534

seq1  TGGTTGTGGGAATTGAACTCAGGAGCTCTGGAAGAACATTGAGTGCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTGGGAATTGAACTCAGGAGCTCTGGAAGAACATTGAGTGCTCTT  584

seq1  AACCCAGTGGTTAAGCCATCTCTCCAGCCCCCCAACAGGTGTCTTAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGTGGTTAAGCCATCTCTCCAGCCCCCCAACAGGTGTCTTAATAC  634

seq1  CTGAGCCAACTCTCTGACCTCTTGACTGCTTTCTATAAAGCATAGAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCAACTCTCTGACCTCTTGACTGCTTTCTATAAAGCATAGAAATC  684

seq1  AATTTTATGTTGATCTTGTCAAAGGTAAATTGATAAATGATTTCTGGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATGTTGATCTTGTCAAAGGTAAATTGATAAATGATTTCTGGAAT  734

seq1  AGGAAAAGAATTTTGAATGATTACTGCCTTGAATAAGCACCCTGCTCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGAATTTTGAATGATTACTGCCTTGAATAAGCACCCTGCTCCAA  784

seq1  CCAGTAAACCAAATAAGAACAAAACACCTCTGCTGCTTGTAGCCTACAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAAACCAAATAAGAACAAAACACCTCTGCTGCTTGTAGCCTACAGT  834

seq1  CTCTACATTTTGTATTGGTTTCGTGTCCCCTTGCCCTGCCCTTACGTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACATTTTGTATTGGTTTCGTGTCCCCTTGCCCTGCCCTTACGTTGA  884

seq1  CTTGCTTATTATATTTCAAACTTGCTGTTTGCAAGGAATGTCCAAATTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTATTATATTTCAAACTTGCTGTTTGCAAGGAATGTCCAAATTGG  934

seq1  TTTGCTTCTGTCTTGTATTTACAAAGAAGGCCATGGGGCCAGTTCACAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCTGTCTTGTATTTACAAAGAAGGCCATGGGGCCAGTTCACAAG  984

seq1  CGAGCGGCCCTGGAAAGACAATGTCCTTTCCTTCCTGAGGCAGATATTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCGGCCCTGGAAAGACAATGTCCTTTCCTTCCTGAGGCAGATATTTC  1034

seq1  AGGATTGGGGAAGCAGGGTTTCCTGTGTTCTCACAAGGGGCTGAGAAAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGGGGAAGCAGGGTTTCCTGTGTTCTCACAAGGGGCTGAGAAAAA  1084

seq1  AAGAAAGCCAGGGCAATTTCAGAAGGAATTC  1131
      |||||||||||||||||||||||||||||||
seq2  AAGAAAGCCAGGGCAATTTCAGAAGGAATTC  1115

seq1: chr3_52119691_52120124
seq2: B6Ng01-094A10.g_78_511

seq1  GCTCGACTTCATCTGGGAGCTGTGTTCCCAGCCAGAAAGGTTCCGTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGACTTCATCTGGGAGCTGTGTTCCCAGCCAGAAAGGTTCCGTTTGT  50

seq1  TTTTCACAGTGCTACTCACTGGAGGTTTATTGCTGTTAGTATATTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAGTGCTACTCACTGGAGGTTTATTGCTGTTAGTATATTTTGTT  100

seq1  TGCTTTCGTTTGTGATTATGGTTTATTTTGTTTATGGTGATGTTTGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCGTTTGTGATTATGGTTTATTTTGTTTATGGTGATGTTTGATCT  150

seq1  CCAGTAGAAATGATGGAGCATGACTTGATAAATTAAGCAGTTTGCCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGAAATGATGGAGCATGACTTGATAAATTAAGCAGTTTGCCCCTT  200

seq1  TATCTATCTGCATATATCTTACGAAGAACTTTGCATTTACTTTTAATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTGCATATATCTTACGAAGAACTTTGCATTTACTTTTAATGTA  250

seq1  TTTAAGGGCCAGAGAGATTGTCTTGTCAGCAGGTAAAGTTGTTGCTGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGGCCAGAGAGATTGTCTTGTCAGCAGGTAAAGTTGTTGCTGAGC  300

seq1  AAGCCTTGTGACAAGTTTGGTCCCTAGAAACTGTGTGACATGGAAGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTGTGACAAGTTTGGTCCCTAGAAACTGTGTGACATGGAAGAAGA  350

seq1  GAAGCAGTTCCACACACCTCCATGTGTGATGGCATGCACAGCTAACCGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGTTCCACACACCTCCATGTGTGATGGCATGCACAGCTAACCGTG  400

seq1  AGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  434
      ||||||||||||||||||||||||||||||||||
seq2  AGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  434