BAC Information

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BAC

Clone NameB6Ng01-094E10
Chromosome3 (Build37)
Map Location 94,774,564 - 94,956,553
singlet/doubletdoublet
Overlap genePik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436
Upstream geneEG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5
Downstream geneSema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094E10.bB6Ng01-094E10.g
ACCDH905541DH905542
length8621,061
definitionDH905541|Mus musculus domesticus DNA, BAC clone: B6Ng01-094E10, 5' end.DH905542|Mus musculus domesticus DNA, BAC clone: B6Ng01-094E10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,955,709 - 94,956,553)(94,774,564 - 94,775,637)
sequence
gaattcctactcatattttagggttcaccataaaagtcttagatttcttg
tttctgagtagccctggttgcctggaactctgtgtagaccagctggcctc
acacttcagtgatcctcctgcctctgccttcccagtgaattctgggatta
caggtgtgtgctactacaccaggctgaagttcctatccttgggctatctt
ctgtgttacagtctccagtgctgcacacctccctgcttgtgtgtgtgcca
gcaagtatggaggccagagcaaggctaggtgtcctcctgtggtgctttct
tccttactttttgagactgggtcttctactgaagctgggattcaactttt
ttgctagacttgctggccaatgagcccctgagattctctgaatacacaac
acacattccaccaagacaggtgacttctggtgggagctggggatccaaat
tcattcaaatctccacgtctgagcaccaggcactttacccaccaagctgt
ctccccagacccacacctcccctattgtagcatgtgatatcatcatcacc
accagttctttttttgtttgtttctttaggacaagttttccctgtagtcc
tggctgtcctgaaactcattctgtaaactaggctggcctcaaactcagaa
acccatcagccttctacctccctgagtgctggctgtgtgtggctttatta
actaggtaaactatgaacccatagaccgccatgctttatcctgcttcagt
gaatgcctcctgaagacttaggttcaatatgcaaaggttataggtgctgt
tggtaaagtcagcttagtaactgcttgccaggtaacctgagttcaatccg
aaaccattttta
gaattccaggtcagtgagagaaaaacaaaccgaaaaaaacaataacaaag
cctaaagtggatggcacctgagggaacactaccaaaacttgtcctctggt
ctccacagcacatgtgtgtacataccagcaaacacatgcactggtacaca
cacacacaaaaagggtcggtggtgaagaatttaaagaatagtacaaataa
tatgcttcagagttgaatattcttgccatggttgagttatttgggaatcg
gattggaatataattccctatgcttttaatggctttatgatctgacactt
aaggataccaaggagaagccaagcagccttcctgtaagtcccacactccc
gaggctgagggaggaagagctcagatttgaggccaggctaggttacagag
tgagattctgtttttgagacagggtcggattatggaactctgcctatcct
ggaactacctatgtagaccaggctggtcttgaactcacaaagatctgcct
gcctttgctgggaggccaccatgcccagccaaactcctggtgattttttt
tgtttgtttgtttggttttagttttgttttttccaaataaaacaaaagga
ctaagacttttaaaaaaggcaaataggaatgtagaaaaattagttaaacc
tatgaatttaaaattttaaatgtattcacttttaaaaagtacactttccc
aaataagacatcagtgaaataatcacattgttttacaacttcgtaaatct
tcttatgtcccactaaattctcatatctgctctgaactcaagctgactgc
tgtatcaacatgtgtgaatttttttccctgtggtataaaaacgttgggat
acttagaatgcaaaggtaaatcttcccttcctataggaggcagttctcaa
cctgggggtctcacctctttggcaacctctgtctccaaaaatacttacac
tgcgactcattacagtagcagaactagttatgaagtacaacgaaatattt
ttagttgagttcccacaacttgagaactatattaaggtcaagcattagga
agttgaagacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_94955709_94956553
seq2: B6Ng01-094E10.b_46_894 (reverse)

seq1  GGATTGAACTCAGTTTACCTGGCAAGCAGTTTACTAAGCTGACTTTACCA  50
      ||||||||||||| ||||||||||||||| ||||||||||||||||||||
seq2  GGATTGAACTCAGGTTACCTGGCAAGCAG-TTACTAAGCTGACTTTACCA  49

seq1  ACAGCACTTATATCCTTTGCATATTGAA-CTTAGTCTTTCAGGAAGCATT  99
      ||||||| |||| ||||||||||||||| || |||| ||||||| |||||
seq2  ACAGCACCTATAACCTTTGCATATTGAACCTAAGTC-TTCAGGAGGCATT  98

seq1  CACTG-AGCAGGATAAAGCATGGCGGTCTATGGGTTCATAGTTTA-CTAG  147
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACTGAAGCAGGATAAAGCATGGCGGTCTATGGGTTCATAGTTTACCTAG  148

seq1  TTAATAAAGCCACACACAGCCAGCACTCA-GGAGGTAG-AGGCTGATGGG  195
      ||||||||||||||||||||||||||||| |||||||| |||||||||||
seq2  TTAATAAAGCCACACACAGCCAGCACTCAGGGAGGTAGAAGGCTGATGGG  198

seq1  TTTCTGAGTTTGAGGCCAGCCTAGTTTACAGAATGAGTTTCAGGACAGCC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTTTGAGGCCAGCCTAGTTTACAGAATGAGTTTCAGGACAGCC  248

seq1  AGGACTACAGGGAAAACTTGTCCTAAAGAAACAAACAAAAAAAGAACTGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTACAGGGAAAACTTGTCCTAAAGAAACAAACAAAAAAAGAACTGG  298

seq1  TGGTGATGATGATATCACATGCTACAATAGGGGAGGTGTGGGTCTGGGGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATGATGATATCACATGCTACAATAGGGGAGGTGTGGGTCTGGGGA  348

seq1  GACAGCTTGGTGGGTAAAGTGCCTGGTGCTCAGACGTGGAGATTTGAATG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTTGGTGGGTAAAGTGCCTGGTGCTCAGACGTGGAGATTTGAATG  398

seq1  AATTTGGATCCCCAGCTCCCACCAGAAGTCACCTGTCTTGGTGGAATGTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGATCCCCAGCTCCCACCAGAAGTCACCTGTCTTGGTGGAATGTG  448

seq1  TGTTGTGTATTCAGAGAATCTCAGGGGCTCATTGGCCAGCAAGTCTAGCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTATTCAGAGAATCTCAGGGGCTCATTGGCCAGCAAGTCTAGCA  498

seq1  AAAAAGTTGAATCCCAGCTTCAGTAGAAGACCCAGTCTCAAAAAGTAAGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTGAATCCCAGCTTCAGTAGAAGACCCAGTCTCAAAAAGTAAGG  548

seq1  AAGAAAGCACCACAGGAGGACACCTAGCCTTGCTCTGGCCTCCATACTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGCACCACAGGAGGACACCTAGCCTTGCTCTGGCCTCCATACTTG  598

seq1  CTGGCACACACACAAGCAGGGAGGTGTGCAGCACTGGAGACTGTAACACA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACACACACAAGCAGGGAGGTGTGCAGCACTGGAGACTGTAACACA  648

seq1  GAAGATAGCCCAAGGATAGGAACTTCAGCCTGGTGTAGTAGCACACACCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAGCCCAAGGATAGGAACTTCAGCCTGGTGTAGTAGCACACACCT  698

seq1  GTAATCCCAGAATTCACTGGGAAGGCAGAGGCAGGAGGATCACTGAAGTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCCAGAATTCACTGGGAAGGCAGAGGCAGGAGGATCACTGAAGTG  748

seq1  TGAGGCCAGCTGGTCTACACAGAGTTCCAGGCAACCAGGGCTACTCAGAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCAGCTGGTCTACACAGAGTTCCAGGCAACCAGGGCTACTCAGAA  798

seq1  ACAAGAAATCTAAGACTTTTAT-CTGAACCCTAAAATATGAGTAGGAATT  844
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  ACAAGAAATCTAAGACTTTTATGGTGAACCCTAAAATATGAGTAGGAATT  848

seq1  C  845
      |
seq2  C  849

seq1: chr3_94774564_94775637
seq2: B6Ng01-094E10.g_69_1129

seq1  GAATTCCAGGTCAGTGAGAGAAAAACAAACCGAAAAAAACAATAACAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCAGTGAGAGAAAAACAAACCGAAAAAAACAATAACAAAG  50

seq1  CCTAAAGTGGATGGCACCTGAGGGAACACTACCAAAACTTGTCCTCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGTGGATGGCACCTGAGGGAACACTACCAAAACTTGTCCTCTGGT  100

seq1  CTCCACAGCACATGTGTGTACATACCAGCAAACACATGCACTGGTACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAGCACATGTGTGTACATACCAGCAAACACATGCACTGGTACACA  150

seq1  CACACACAAAAAGGGTCGGTGGTGAAGAATTTAAAGAATAGTACAAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAAAAAGGGTCGGTGGTGAAGAATTTAAAGAATAGTACAAATAA  200

seq1  TATGCTTCAGAGTTGAATATTCTTGCCATGGTTGAGTTATTTGGGAATCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTCAGAGTTGAATATTCTTGCCATGGTTGAGTTATTTGGGAATCG  250

seq1  GATTGGAATATAATTCCCTATGCTTTTAATGGCTTTATGATCTGACACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGAATATAATTCCCTATGCTTTTAATGGCTTTATGATCTGACACTT  300

seq1  AAGGATACCAAGGAGAAGCCAAGCAGCCTTCCTGTAAGTCCCACACTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATACCAAGGAGAAGCCAAGCAGCCTTCCTGTAAGTCCCACACTCCC  350

seq1  GAGGCTGAGGGAGGAAGAGCTCAGATTTGAGGCCAGGCTAGGTTACAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGAGGGAGGAAGAGCTCAGATTTGAGGCCAGGCTAGGTTACAGAG  400

seq1  TGAGATTCTGTTTTTGAGACAGGGTCTCTTTATGGAACTCTGCCTATCCT  450
      ||||||||||||||||||||||||||   |||||||||||||||||||||
seq2  TGAGATTCTGTTTTTGAGACAGGGTCGGATTATGGAACTCTGCCTATCCT  450

seq1  GGAACTACCTATGTAGACCAGGCTGGTCTTGAACTCACAAAGATCTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTACCTATGTAGACCAGGCTGGTCTTGAACTCACAAAGATCTGCCT  500

seq1  GCCTTTGCTGGGAGGCCACCATGCCCAGCCAAACTCCTGGTGATTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGCTGGGAGGCCACCATGCCCAGCCAAACTCCTGGTGATTTTTTT  550

seq1  TGTTTGTTTGTTTGGTTTTAGTTTTGTTTTTTCCAAATAAAACAAAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTGGTTTTAGTTTTGTTTTTTCCAAATAAAACAAAAGGA  600

seq1  CTAAGACTTTTAAAAAAGGCAAATAGGAATGTAGAAAAATTAGTTAAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACTTTTAAAAAAGGCAAATAGGAATGTAGAAAAATTAGTTAAACC  650

seq1  TATGAATTTAAAATTTTAAATGTATTCACTTTTAAAAAGTACACTTTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTTAAAATTTTAAATGTATTCACTTTTAAAAAGTACACTTTCCC  700

seq1  AAATAAGACATCAGTGAAATAATCACATTGTTTTACAACTTCGTAAATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGACATCAGTGAAATAATCACATTGTTTTACAACTTCGTAAATCT  750

seq1  TCCTTATGTCCCACTAAATTCTCATATCTGCTCTGAACTCAAGCTGACTG  800
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-CTTATGTCCCACTAAATTCTCATATCTGCTCTGAACTCAAGCTGACTG  799

seq1  CTGTATCAACATGTGTGAATTTTTTTCCCTGTGGTATAAAAACGTT-GGA  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTGTATCAACATGTGTGAATTTTTTTCCCTGTGGTATAAAAACGTTGGGA  849

seq1  TACTTAGAATGCAAAGGTAAATCTTTCCCTTCCTATAGGATGGCAGTTCT  899
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  TACTTAGAATGCAAAGGTAAATC-TTCCCTTCCTATAGGA-GGCAGTTCT  897

seq1  CAACCTGGGGGTCTCAACCTCTTTGGCAAACCTCTGTCTCCAAAAATACT  949
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  CAACCTGGGGGTCTC-ACCTCTTTGGC-AACCTCTGTCTCCAAAAATACT  945

seq1  TACACTGCGACTCATTACAGTAGCAGAACTAGTTATGAAGTAACAACGAA  999
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TACACTGCGACTCATTACAGTAGCAGAACTAGTTATGAAGT-ACAACGAA  994

seq1  ATAATTTTATAGTTGGAGTTCCCACAACATGAGGAACTATATTAAAGGGT  1049
      |||  ||| ||||| ||||||||||||| ||| ||||||||||||  |||
seq2  ATA--TTTTTAGTT-GAGTTCCCACAACTTGA-GAACTATATTAA--GGT  1038

seq1  CAAAGCATTAGGAAGGTTGAGGACC  1074
      | |||||||||||| ||||| ||||
seq2  C-AAGCATTAGGAA-GTTGAAGACC  1061