BAC Information

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BAC

Clone NameB6Ng01-094F01
Chromosome3 (Build37)
Map Location 40,941,204 - 41,099,960
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094F01.bB6Ng01-094F01.g
ACCDH905571DH905572
length9981,154
definitionDH905571|Mus musculus domesticus DNA, BAC clone: B6Ng01-094F01, 5' end.DH905572|Mus musculus domesticus DNA, BAC clone: B6Ng01-094F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,098,961 - 41,099,960)(40,941,204 - 40,942,377)
sequence
gaattcatgctgcagatggttgctgagtaaacgagagagtgagcgaatag
gtgaaggagaccatgtgccattctgcagacatttcggacccatagaataa
aaactcagcctagtgacttagcctctaccgtaagtcattgatggtttata
ggcaaagacaagagccaaaggattatgaaggagtacaactcggggagcct
ttagccggcccagaggaaacaaccttgctctctatagctctttaacccat
cggtgcagccgccatggtagactgtagcttcatgtcacttgcaggcaata
ctatccacctctctgtctccaagagaattcttctccttccaagtgatgga
gtttttggttttgtttttttaactagctaaggacacttttccctcttgac
atttgagagtgttctcagcaagctttaaacaagcacaatgtgatatcccc
cacaccccagtgctctttattcctcttaaaatttgcctgcgtcgttatta
aggggaacccagctcttcccttttgcaatgaaaagaaagttggctgggac
cagaccgcggaggcaaggaggcggcttttagtcagcaagggctgacagct
cctcacactgtctgcagcctccccagtcttgatttggcccttaacctagt
ttttacagagactctgccaagtgacaaacacattccatcacccgtgtctg
aataaatgaaccaggcttttgccagaaatgataagtcctgttcccagaga
aggttctaggctgcaacactcagtcggagggttttttcctcgccactgaa
tggtctagtttccacttggctgtcctttccacagcaagtgtgggctgtgg
ctgcatccaatactgagttactctgagaagatgaaaggttaggggctcag
aaaccaaattcaaagggatcaaatgtcacagtggcaaagcaattgagcaa
attgtttagaagagttggcaatgtgggggcagggggttgtggaaggga
gaattcatgccataggtcatgtggaagtctgaggacaacttgtaagagct
ggttctctctttctaccttgtggccccgactgattgagctcaggctgtta
ggtttgacaccaagcacctttacttgctaagccatgtcctagcaccacgt
ttggccttcagcacagcttcctgtccagtgtcacccattgccaaccatct
ccgaggctcccttagccctctcttgtaatggagactttctcacttatatc
tgatgtcttattttgccctatgtaactctgtctttaaatttaaatcccca
ctctctcttcctccccccaccctctccaccccgtgtgtgtgcgtgttcaa
gtggaggtcagaggactacttgctgggtccagtcctttctttttggctgt
gtggattatggggattgaacgtgattcatcaggcttagtggtaagtgttt
ttacctgccagccctggaatacaaattcagctttctgaagaaagataaat
agaaagttgcatttttcaaatagtgcatgttgaagatgttatcttacctt
caaacttgaccaacagtttggctgggtataaaattctaggtaggaataat
ttttttcttctactttagaagtcattattcctttatgttcttgcttctag
tattgttactgaggtctgagaccactcagatttcatgttcccttctacat
gactttgaaaataagtcttttcatagttgactgtttttatcttgttttct
ctttgttctcagcgttgggccattccatcatgctctgttttgctgtagat
ctattttcatcaattaggccaggcatttggcaagctcttttactctagaa
atttatgtccttcaattctgggaaatgctcttgaattatgtaatcaatgt
tttcctcttgctgcctgatttaaggagactgcttaacagagaacagataa
aaccattgagagacttttaaagatatgtactcccaggttcatgctagagt
tccatttgcatattggtatggtatgtatattttggtgacattctgttgca
gtctagaaaacaatgtctgatagaatgtgactttgatacagattagacta
tcatctagaagcatccataagttggaataaagcgacctggaaaaaaagtt
tcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41098961_41099960
seq2: B6Ng01-094F01.b_41_1038 (reverse)

seq1  TCCC-TCCACAACCCCCCTGCCCCCACATTTGCCAACTCTTCTAAACAAT  49
      |||| ||||||| ||||||||||||||| |||||||||||||||||||||
seq2  TCCCTTCCACAA-CCCCCTGCCCCCACA-TTGCCAACTCTTCTAAACAAT  48

seq1  TTGCTCAATTGCTTTGCCACTGTGACATTTTGATCCCTTTGAATTTGGTT  99
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTGCTCAATTGCTTTGCCACTGTGACA-TTTGATCCCTTTGAATTTGGTT  97

seq1  TCTGAGCCCCTAACCTTTCATCTTCTCAGAGTAACTCAGTATTGGATGCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCCCCTAACCTTTCATCTTCTCAGAGTAACTCAGTATTGGATGCA  147

seq1  GCCACAGCCCACACTTGCTGTGGAAAGGACAGCCAAGTGGAAACTAGACC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGCCCACACTTGCTGTGGAAAGGACAGCCAAGTGGAAACTAGACC  197

seq1  ATTCAGTGGCGAGGAAAAAACCCTCCGACTGAGTGTTGCAGCCTAGAACC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGGCGAGGAAAAAACCCTCCGACTGAGTGTTGCAGCCTAGAACC  247

seq1  TTCTCTGGGAACAGGACTTATCATTTCTGGCAAAAGCCTGGTTCATTTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGGAACAGGACTTATCATTTCTGGCAAAAGCCTGGTTCATTTAT  297

seq1  TCAGACACGGGTGATGGAATGTGTTTGTCACTTGGCAGAGTCTCTGTAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACGGGTGATGGAATGTGTTTGTCACTTGGCAGAGTCTCTGTAAA  347

seq1  AACTAGGTTAAGGGCCAAATCAAGACTGGGGAGGCTGCAGACAGTGTGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGTTAAGGGCCAAATCAAGACTGGGGAGGCTGCAGACAGTGTGAG  397

seq1  GAGCTGTCAGCCCTTGCTGACTAAAAGCCGCCTCCTTGCCTCCGCGGTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTCAGCCCTTGCTGACTAAAAGCCGCCTCCTTGCCTCCGCGGTCT  447

seq1  GGTCCCAGCCAACTTTCTTTTCATTGCAAAAGGGAAGAGCTGGGTTCCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCAGCCAACTTTCTTTTCATTGCAAAAGGGAAGAGCTGGGTTCCCC  497

seq1  TTAATAACGACGCAGGCAAATTTTAAGAGGAATAAAGAGCACTGGGGTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAACGACGCAGGCAAATTTTAAGAGGAATAAAGAGCACTGGGGTGT  547

seq1  GGGGGATATCACATTGTGCTTGTTTAAAGCTTGCTGAGAACACTCTCAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGATATCACATTGTGCTTGTTTAAAGCTTGCTGAGAACACTCTCAAA  597

seq1  TGTCAAGAGGGAAAAGTGTCCTTAGCTAGTTAAAAAAACAAAACCAAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGAGGGAAAAGTGTCCTTAGCTAGTTAAAAAAACAAAACCAAAAA  647

seq1  CTCCATCACTTGGAAGGAGAAGAATTCTCTTGGAGACAGAGAGGTGGATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCACTTGGAAGGAGAAGAATTCTCTTGGAGACAGAGAGGTGGATA  697

seq1  GTATTGCCTGCAAGTGACATGAAGCTACAGTCTACCATGGCGGCTGCACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGCCTGCAAGTGACATGAAGCTACAGTCTACCATGGCGGCTGCACC  747

seq1  GATGGGTTAAAGAGCTATAGAGAGCAAGGTTGTTTCCTCTGGGCCGGCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGTTAAAGAGCTATAGAGAGCAAGGTTGTTTCCTCTGGGCCGGCTA  797

seq1  AAGGCTCCCCGAGTTGTACTCCTTCATAATCCTTTGGCTCTTGTCTTTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCCCCGAGTTGTACTCCTTCATAATCCTTTGGCTCTTGTCTTTGC  847

seq1  CTATAAACCATCAATGACTTACGGTAGAGGCTAAGTCACTAGGCTGAGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAACCATCAATGACTTACGGTAGAGGCTAAGTCACTAGGCTGAGTT  897

seq1  TTTATTCTATGGGTCCGAAATGTCTGCAGAATGGCACATGGTCTCCTTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTATGGGTCCGAAATGTCTGCAGAATGGCACATGGTCTCCTTCA  947

seq1  CCTATTCGCTCACTCTCTCGTTTACTCAGCAACCATCTGCAGCATGAATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCGCTCACTCTCTCGTTTACTCAGCAACCATCTGCAGCATGAATT  997

seq1  C  1000
      |
seq2  C  998

seq1: chr3_40941204_40942377
seq2: B6Ng01-094F01.g_66_1219

seq1  GAATTCATGCCATAGGTCATGTGGAAGTCTGAGGACAACTTGTAAGAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCCATAGGTCATGTGGAAGTCTGAGGACAACTTGTAAGAGCT  50

seq1  GGTTCTCTCTTTCTACCTTGTGGCCCCGACTGATTGAGCTCAGGCTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCTCTTTCTACCTTGTGGCCCCGACTGATTGAGCTCAGGCTGTTA  100

seq1  GGTTTGACACCAAGCACCTTTACTTGCTAAGCCATGTCCTAGCACCACGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGACACCAAGCACCTTTACTTGCTAAGCCATGTCCTAGCACCACGT  150

seq1  TTGGCCTTCAGCACAGCTTCCTGTCCAGTGTCACCCATTGCCAACCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTTCAGCACAGCTTCCTGTCCAGTGTCACCCATTGCCAACCATCT  200

seq1  CCGAGGCTCCCTTAGCCCTCTCTTGTAATGGAGACTTTCTCACTTATATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGCTCCCTTAGCCCTCTCTTGTAATGGAGACTTTCTCACTTATATC  250

seq1  TGATGTCTTATTTTGCCCTATGTAACTCTGTCTTTAAATTTAAATCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCTTATTTTGCCCTATGTAACTCTGTCTTTAAATTTAAATCCCCA  300

seq1  CTCTCTCTTCCTCCCCCCACCCTCTCCACCCCGTGTGTGTGCGTGTTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTTCCTCCCCCCACCCTCTCCACCCCGTGTGTGTGCGTGTTCAA  350

seq1  GTGGAGGTCAGAGGACTACTTGCTGGGTCCAGTCCTTTCTTTTTGGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGTCAGAGGACTACTTGCTGGGTCCAGTCCTTTCTTTTTGGCTGT  400

seq1  GTGGATTATGGGGATTGAACGTGATTCATCAGGCTTAGTGGTAAGTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTATGGGGATTGAACGTGATTCATCAGGCTTAGTGGTAAGTGTTT  450

seq1  TTACCTGCCAGCCCTGGAATACAAATTCAGCTTTCTGAAGAAAGATAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGCCAGCCCTGGAATACAAATTCAGCTTTCTGAAGAAAGATAAAT  500

seq1  AGAAAGTTGCATTTTTCAAATAGTGCATGTTGAAGATGTTATCTTACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTGCATTTTTCAAATAGTGCATGTTGAAGATGTTATCTTACCTT  550

seq1  CAAACTTGACCAACAGTTTGGCTGGGTATAAAATTCTAGGTAGGAATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTGACCAACAGTTTGGCTGGGTATAAAATTCTAGGTAGGAATAAT  600

seq1  TTTTTTCTTCTACTTTAGAAGTCATTATTCCTTTATGTTCTTGCTTCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTCTACTTTAGAAGTCATTATTCCTTTATGTTCTTGCTTCTAG  650

seq1  TATTGTTACTGAGGTCTGAGACCACTCAGATTTCATGTTCCCTTCTACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTACTGAGGTCTGAGACCACTCAGATTTCATGTTCCCTTCTACAT  700

seq1  GACTTTGAAAATAAGTCTTTTCATAGTTGACTGTTTTTATCTTGTTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGAAAATAAGTCTTTTCATAGTTGACTGTTTTTATCTTGTTTTCT  750

seq1  CTTTGTTCTCAGCGTTGGGCCATTCCATCATGCTCTGTTTTGCTGTAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCTCAGCGTTGGGCCATTCCATCATGCTCTGTTTTGCTGTAGAT  800

seq1  CTATTTTCATCAATTAGGCCAGGCATTTGGCAAGCTCTTTTACTCTAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCATCAATTAGGCCAGGCATTTGGCAAGCTCTTTTACTCTAGAA  850

seq1  ATTTATGTCCTTCAATTCTGGGAAATGCTCTTGAATTATGTAATCAATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTCCTTCAATTCTGGGAAATGCTCTTGAATTATGTAATCAATGT  900

seq1  TTTCCTCTTGCTGCCTGATTTAAGGGAGAACTGCTTAACAAGAAGAACAG  950
      ||||||||||||||||||||||| |||| |||||||||||   |||||||
seq2  TTTCCTCTTGCTGCCTGATTTAA-GGAG-ACTGCTTAACA--GAGAACAG  946

seq1  ATAAAACCAATTGAGAGACTTTTTAAAGATATGTACTCCCAGGTTTCAAT  1000
      |||||||| |||||||||| |||||||||||||||||||||||||   ||
seq2  ATAAAACC-ATTGAGAGAC-TTTTAAAGATATGTACTCCCAGGTT--CAT  992

seq1  GCTAGAGTTTCCAATTTGCATATTTTGGTATGGTATGTATATTTTGGTGA  1050
      |||||||||  | |||||||||  ||||||||||||||||||||||||||
seq2  GCTAGAGTT--CCATTTGCATA--TTGGTATGGTATGTATATTTTGGTGA  1038

seq1  CATTTCTGTTGCAGTCTTAAGAAACATGTCTGGATAG-ATGTGACTTTGA  1099
      || ||||||||||||||  | ||  |||||| ||||| ||||||||||||
seq2  CA-TTCTGTTGCAGTCTAGAAAACAATGTCT-GATAGAATGTGACTTTGA  1086

seq1  ATTAACAGTATTAGACTATCATCTAGAAGCATCACATAA-TTTGAATAAA  1148
          |||| |||||||||||||||||||||||| ||||| || |||||||
seq2  ---TACAG-ATTAGACTATCATCTAGAAGCATC-CATAAGTTGGAATAAA  1131

seq1  AGCAGCTAGAAAAAAAAAAGTTTCCA  1174
         | || |   ||||||||||||||
seq2  GCGACCTGG---AAAAAAAGTTTCCA  1154