BAC Information

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BAC

Clone NameB6Ng01-094M21
Chromosome3 (Build37)
Map Location 141,385,801 - 141,386,307
singlet/doubletsinglet
Overlap geneUnc5c
Upstream geneLOC621343, 4930590L14Rik, Pdha2, LOC100039923
Downstream geneBmpr1b, Gabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094M21.bB6Ng01-094M21.g
ACCDH905923DH905924
length9291,147
definitionDH905923|Mus musculus domesticus DNA, BAC clone: B6Ng01-094M21, 5' end.DH905924|Mus musculus domesticus DNA, BAC clone: B6Ng01-094M21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggatagccagggctacacagagaaaccctgtctcgaaaaaca
aaaacaaacaaacaaacaaacaaaaaaacagtgtgaggaactgaattgat
aaggatggcagacaagagaggaaagagaaaatcatatcacatgaaaggtt
gaatatggaggagggaaactgaggctgccaagggcaagagcctatattaa
tagaaccactgcagcctcaagacctgcagtaaaagtccaatatagctaat
aaggcgatcaattcttcattaaaagacctgcacctctcagcccatggtca
aaaacagtaatgggacttaaattatgtctttgtatgctactaggaagaag
aagaagaaaaaaaaaaaactaaaaagctggggttgaattgtcttagccag
tgctctattactatcaagagacaccatcaccatgacaactcttataaagg
aagcatttaattgggacttgtctatatttcagaaatttattattgccatg
gcagggagcatggcatagtgctggtagacatggtgctgaaaaagtacctg
agagttctatatccatatatgcaacaatggatagagagagcctctgggcc
ttgatagaacctagcggggaaacccccactcaattcccgattcggcgtgc
acccaaaaaaatcatgaaggaccatcttgatgtaattacatgaggtcgtt
taattacggagctccggaccgacatgcatcccacacaggagataatggat
gttggccacgaggctcgaaagctaggggtttttacggggtaaggggctta
ggggtgtggaattgcatagcgacacactactgccttattcaaacatcagc
agaaaaattacatgtacgtgcaggtgtcagagttctgtgagttgttgact
cagtttagatagcctgtatgtcctcacat
gaattctcacctgaggaataccaaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatacaaatcaaaacagcccagagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaaaaggaacactcctacattgctggtg
ggatacaagcttgaataaccactccggaaatcagtctggcggttcctcag
aaaattggacatagtactaccggaggatcccgcaatacctctcctggaca
tatatccagaagatgttccaactggtaaaaaagacacatgctccactatg
ttcatagcagccttgtttataatagccagaagctagaaagaacccagatg
cccctcaaaagaggaatggatacagaaaatgtggtacatttacacagtgg
agtactactcagctatttaaaagaatgaatttatgaaatccctaggcaaa
tggattgacctgtagggcatcatcctgagtgaagtaacccaatcacaaaa
gaactcacgtgatatgtactcactgataagtggatattagccgagaaact
taggatacccaagattcaagatacaaagcacatgaaactcaagaagaatg
aagaccaaagtgtggacactttgccccttcttagaattggggaacaaaac
acccatggaaggagttacagagacaaagtttggaggtaagacaaaaggat
ggaccatccagagactaccatatccgaggatccatcccataatcagcaga
caccattgcatacactagcaagattttgctgaaaggaccctgatatagct
gtctcttgtgagactatgctggagcctagcaaacacagaagtggatgctc
acagtcagctatgggatggatcacaggttcccaaagaggagctagagaaa
gtatccaaggagctaagggatctgcaacctatagtggacacattatgaac
taatcagtacccctggagctcgtgtctctagctgcattgtatcagagatg
ctagtcggccatcactgggaagagagtcatggtgttgactttatgtgctc
agttcaggcaagcagggccaaattggatgcggttggcacgcggcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_141385801_141386307
seq2: B6Ng01-094M21.b_53_419

seq1  TTCCAGGACAGCCAGAGCTATACAGAGAAACCCTGTCTCGAAAAGCAAAA  50
      |||||||| |||||| |||| ||||||||||||||||||||||| | |||
seq2  TTCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAC-AAA  49

seq1  AACAAACAAACAAACAAAAACAAAAACA--AACAAAAACAAAAAAGAATT  98
      |||||||||||||||||| | |||||||     |  |||  ||  ||  |
seq2  AACAAACAAACAAACAAACAAAAAAACAGTGTGAGGAACTGAATTGA--T  97

seq1  AAGGTT-----ACAA-AGAAAATAGTCAAAATCTATTAGCTTCCCTCCTT  142
      |||| |     |||| |||  | ||  |||||| ||             |
seq2  AAGGATGGCAGACAAGAGAGGAAAGAGAAAATC-AT------------AT  134

seq1  CCTCTTAAAGTACTGTTTTGAAAAATCCATATTCTTAATCTGTGCCTGTG  192
      |   | ||||       |||||                            
seq2  CACATGAAAG------GTTGAA----------------------------  150

seq1  TTATAGACACTGCTATTACCCAGGAACCATCTGAGGCAGGTCCTGTCATC  242
       ||| ||              ||| |  | ||||||      ||| ||  
seq2  -TATGGA------------GGAGGGA--AACTGAGG------CTGCCAAG  179

seq1  ATTTACACTCTATCAATAATAAAA----TGGAGATGTGGAAACATG-AGA  287
          | |  |||| | ||||| ||    || ||   |  | || || || 
seq2  GGCAAGAGCCTAT-ATTAATAGAACCACTGCAG-CCTCAAGACCTGCAGT  227

seq1  AAAATTGCCTGACCATCTGTTTTGATAGATATGATATGTACGGAACATTT  337
      ||||      | |||         ||| |  | ||| |    || || ||
seq2  AAAA------GTCCA---------ATATAGCTAATAAG--GCGATCAATT  260

seq1  CCTCACTGTA--ATCTCCATCACTCCACACAGCTACATGCACAGGAAGCA  385
      | ||| |  |  | || || | |||  | ||    ||   |||| ||   
seq2  CTTCATTAAAAGACCTGCACCTCTCAGCCCATGGTCAAAAACAGTAA---  307

seq1  ACTTTTGATTTTTCTGTCTAGCCCTTATAGCATTTTTGAGCAGTTGGTTT  435
                        | |  ||||    | || ||            
seq2  ------------------TGGGACTTA----AATTATG------------  323

seq1  GGTTGGTGGTTGGCTCTTTCTTGGCATTTACAATATTTTGAGAGGAAAGG  485
                    ||||| |  ||   ||| |           | ||| 
seq2  --------------TCTTTGTATGC---TACTA-----------GGAAGA  345

seq1  CAAATAAGAAAAAAAAAAAACT  507
        || |||||||||||||||||
seq2  AGAAGAAGAAAAAAAAAAAACT  367