BAC Information

Click to search

BAC

Clone NameB6Ng01-095E18
Chromosome3 (Build37)
Map Location 138,104,910 - 138,231,671
singlet/doubletdoublet
Overlap geneAdh5, Metap1, EG383925, EG668879, Eif4e
Upstream geneEG229862, Ddit4l, LOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4
Downstream geneEG545570, LOC668881, LOC668882, Ppia-ps3_1437.1, Tspan5, LOC620771, Rap1gds1, EG229879, B930007M17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095E18.bB6Ng01-095E18.g
ACCDH906277DH906278
length1,035661
definitionDH906277|Mus musculus domesticus DNA, BAC clone: B6Ng01-095E18, 5' end.DH906278|Mus musculus domesticus DNA, BAC clone: B6Ng01-095E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,104,910 - 138,105,953)(138,231,011 - 138,231,671)
sequence
gaattcctcaacttgttcaacttcttacaggagtataacttataatatcc
acatgtggtggtttgactggaaatggcttgtatatttgaatattttaatc
accagacactggaatcatttaaaaggattaggaggcacgaatacaagatt
agttttaagtaagttgggttttaagcactgagataccctaatacacactg
gcttggtacttcaagcctggagtttaggaacactaccctgactggagaca
gactatggtgatcatcctattaattatatacgttaaaagccagggtgtga
gttagtgtgaagtgagagaagggctttgaacagtaccgtggagaatgtca
acccttaaagtgtgtaatcaggaaatgagccatgaaaaagacaaaatgcg
gtgttttagtgggtacatttcaacacaagcagcatttgggattacatcag
caaatacagcagcctctgtctccacatagttggtccactcttaaaagggg
cccactctgctccctcggttcccttcctgaaaacttctctccgtgtccga
tggtccctgaaatcccaggacctggtcgtaacctgctgaaatccgaggtc
gggctgttgctaggatgggcacctctccctctagtgttccttcaaagccc
ttgagggccgcagtgttgactcgtcctggacccagacccgcaaaacaagg
ggctgcattagctcgctagcgcatgcaacccgcaaatcagtagctcgcta
gctagcgcgtgcaagcccgggaagaggggggcggggggaccgcggacagg
gacacacggaaaggcgtggcttgttctacacgtgctttcccacacgtgtt
accacacgctatatttctctcacgtctaacgtacaagactgcacgaaaat
agacaaggaataccacagagatgctttgcacggctcagtgagccagcctg
gaataaagcgcttcacggcccaaaactactgctctcagcacggagcgcag
tagtcgaactcaggcttcgaaccgcgggccccgcc
gaattcccagtactcatacgggaactcatagccagctgtaatcctaaact
catgggatccaatgcccttctttagtgtgcaaacatacatgcaaacaaaa
cacctaattttttgaaaagccaacgttttgaatacatgaaaataatttta
atactcaatataaaaatttctaaagatataaaaaaccataggatggctaa
ataataaagagtagaatcaaaataaataaggatcctgagaagccgggcgt
ggtggtgcacgcctttaatcccagcactcaggaggcagaggcaggcggat
ttctgagttcaaggccagcccagtctacaaagtgagttccaggacagcca
gggctatacagaaaaaccctgtctcaaaaaaaaaatcctgagagaactgt
accaaagagacaaacattaaacaaagccatgtgtctctcttgctcgccca
accaccacatgtacgattcagacacgttgctggcaaagtcagtctcctga
catttatagttcatcacacaaaacccaaatttctttcctagagaaaatga
aatgttttagatttgttagctttattaagacattttacaactgaacatac
ggatcttcatttgagcttgtcttgaaccctaggtagacctgactgaaatg
tatattgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_138104910_138105953
seq2: B6Ng01-095E18.b_45_1079

seq1  GAATTCCTCAACTTGTTCAACTTCTTACAGGAGTATAACTTATAATATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAACTTGTTCAACTTCTTACAGGAGTATAACTTATAATATCC  50

seq1  ACATGTGGTGGTTTGACTGGAAATGGCTTGTATATTTGAATATTTTAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGTGGTTTGACTGGAAATGGCTTGTATATTTGAATATTTTAATC  100

seq1  ACCAGACACTGGAATCATTTAAAAGGATTAGGAGGCACGAATACAAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACACTGGAATCATTTAAAAGGATTAGGAGGCACGAATACAAGATT  150

seq1  AGTTTTAAGTAAGTTGGGTTTTAAGCACTGAGATACCCTAATACACACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAGTAAGTTGGGTTTTAAGCACTGAGATACCCTAATACACACTG  200

seq1  GCTTGGTACTTCAAGCCTGGAGTTTAGGAACACTACCCTGACTGGAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTACTTCAAGCCTGGAGTTTAGGAACACTACCCTGACTGGAGACA  250

seq1  GACTATGGTGATCATCCTATTAATTATATACGTTAAAAGCCAGGGTGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGGTGATCATCCTATTAATTATATACGTTAAAAGCCAGGGTGTGA  300

seq1  GTTAGTGTGAAGTGAGAGAAGGGCTTTGAACAGTACCGTGGAGAATGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGTGAAGTGAGAGAAGGGCTTTGAACAGTACCGTGGAGAATGTCA  350

seq1  ACCCTTAAAGTGTGTAATCAGGAAATGAGCCATGAAAAAGACAAAATGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTAAAGTGTGTAATCAGGAAATGAGCCATGAAAAAGACAAAATGCG  400

seq1  GTGTTTTAGTGGGTACATTTCAACACAAGCAGCATTTGGGATTACATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTAGTGGGTACATTTCAACACAAGCAGCATTTGGGATTACATCAG  450

seq1  CAAATACAGCAGCCTCTGTCTCCACATAGTTGGTCCACTCTTAAAAGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACAGCAGCCTCTGTCTCCACATAGTTGGTCCACTCTTAAAAGGGG  500

seq1  CCCACTCTGCTCCCTCGGTTCCCTTCCTGAAAACTTCTCTCCGTGTCCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCTGCTCCCTCGGTTCCCTTCCTGAAAACTTCTCTCCGTGTCCGA  550

seq1  TGGTCCCTGAAATCCCAGGACCTGGTCGTAACCTGCTGAAATCCGAGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCTGAAATCCCAGGACCTGGTCGTAACCTGCTGAAATCCGAGGTC  600

seq1  GGGCTGTTGCTAGGATGGGCACCTCTCCCTCTAGTGTTCCTTCAAAGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTTGCTAGGATGGGCACCTCTCCCTCTAGTGTTCCTTCAAAGCCC  650

seq1  TTGAGGGCCGCAGTGTTGACTCGTCCTGGACCCAGACCCGCAAAACAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGCCGCAGTGTTGACTCGTCCTGGACCCAGACCCGCAAAACAAGG  700

seq1  GGCTGCATTAGCTCGCTAGCGCATGCAACCCGCAAATCAGTAGCTCGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCATTAGCTCGCTAGCGCATGCAACCCGCAAATCAGTAGCTCGCTA  750

seq1  GCTAGCGCGTGCAAGCCCGGGAAGAGGGGGGCGGGGGGACCGCGGACAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCGCGTGCAAGCCCGGGAAGAGGGGGGCGGGGGGACCGCGGACAGG  800

seq1  GACACACGG-AAGGCGTGGCTTGTTCTACACGTGCTTTCCCACACGTGTT  849
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GACACACGGAAAGGCGTGGCTTGTTCTACACGTGCTTTCCCACACGTGTT  850

seq1  ACCACACGCTATATTTCTCTCACGTCTAACGTACAAAGACTGCACGAAAA  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACCACACGCTATATTTCTCTCACGTCTAACGTAC-AAGACTGCACGAAAA  899

seq1  TTAGACAAGGAAATACCACAGAGATGCTTTGCAGGGGCTCAGTTGAGCCA  949
       ||||||||| ||||||||||||||||||||||  ||||||| |||||||
seq2  -TAGACAAGG-AATACCACAGAGATGCTTTGCA-CGGCTCAG-TGAGCCA  945

seq1  GCCTGGAATAAAGCGCTTCACGGCCCCAAAACTACTGCCTCCCCAGCAAC  999
      ||||||||||||||||||||||| ||||||||||||||   | |||| ||
seq2  GCCTGGAATAAAGCGCTTCACGG-CCCAAAACTACTGC--TCTCAGC-AC  991

seq1  GGAGCGCAGTAGCCGAAACTCAGGCTCCGAAACGCGGGCCCCGCC  1044
      |||||||||||| || |||||||||| |||| |||||||||||||
seq2  GGAGCGCAGTAGTCG-AACTCAGGCTTCGAACCGCGGGCCCCGCC  1035

seq1: chr3_138231011_138231671
seq2: B6Ng01-095E18.g_67_727 (reverse)

seq1  CACACAATATACATTTCAGTCAGGTCTACCTAGGGTTCAAGACAAGCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAATATACATTTCAGTCAGGTCTACCTAGGGTTCAAGACAAGCTCA  50

seq1  AATGAAGATCCGTATGTTCAGTTGTAAAATGTCTTAATAAAGCTAACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGATCCGTATGTTCAGTTGTAAAATGTCTTAATAAAGCTAACAAA  100

seq1  TCTAAAACATTTCATTTTCTCTAGGAAAGAAATTTGGGTTTTGTGTGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAACATTTCATTTTCTCTAGGAAAGAAATTTGGGTTTTGTGTGATG  150

seq1  AACTATAAATGTCAGGAGACTGACTTTGCCAGCAACGTGTCTGAATCGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAAATGTCAGGAGACTGACTTTGCCAGCAACGTGTCTGAATCGTA  200

seq1  CATGTGGTGGTTGGGCGAGCAAGAGAGACACATGGCTTTGTTTAATGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGTGGTTGGGCGAGCAAGAGAGACACATGGCTTTGTTTAATGTTT  250

seq1  GTCTCTTTGGTACAGTTCTCTCAGGATTTTTTTTTTGAGACAGGGTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTGGTACAGTTCTCTCAGGATTTTTTTTTTGAGACAGGGTTTTT  300

seq1  CTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACTGGGCTGGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACTGGGCTGGCCT  350

seq1  TGAACTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGG  400

seq1  CGTGCACCACCACGCCCGGCTTCTCAGGATCCTTATTTATTTTGATTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCACCACCACGCCCGGCTTCTCAGGATCCTTATTTATTTTGATTCTA  450

seq1  CTCTTTATTATTTAGCCATCCTATGGTTTTTTATATCTTTAGAAATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATTATTTAGCCATCCTATGGTTTTTTATATCTTTAGAAATTTTT  500

seq1  ATATTGAGTATTAAAATTATTTTCATGTATTCAAAACGTTGGCTTTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAGTATTAAAATTATTTTCATGTATTCAAAACGTTGGCTTTTCAA  550

seq1  AAAATTAGGTGTTTTGTTTGCATGTATGTTTGCACACTAAAGAAGGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAGGTGTTTTGTTTGCATGTATGTTTGCACACTAAAGAAGGGCAT  600

seq1  TGGATCCCATGAGTTTAGGATTACAGCTGGCTATGAGTTCCCGTATGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCCATGAGTTTAGGATTACAGCTGGCTATGAGTTCCCGTATGAGT  650

seq1  ACTGGGAATTC  661
      |||||||||||
seq2  ACTGGGAATTC  661