BAC Information

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BAC

Clone NameB6Ng01-096L23
Chromosome3 (Build37)
Map Location 5,159,986 - 5,347,998
singlet/doubletdoublet
Overlap geneZfhx4
Upstream geneLOC667709, LOC620283
Downstream genePxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570, LOC100041214
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096L23.bB6Ng01-096L23.g
ACCDH907307DH907308
length9641,148
definitionDH907307|Mus musculus domesticus DNA, BAC clone: B6Ng01-096L23, 5' end.DH907308|Mus musculus domesticus DNA, BAC clone: B6Ng01-096L23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,159,986 - 5,160,955)(5,346,834 - 5,347,998)
sequence
gaattcattgaaatttaagttctcatttgtatagctagggggtggattac
agatgtgtgtgcttgttttattactataatgaacaggacttgtatgtcta
acactaattaaaattctgctctgatccatatagctgaggcctcgccccca
aatgaattgtttttaaatctttatattaaatttattatacatgttcatga
taatgaaagtatttatttttagtatagcgaaagcaaaaattaaattcaga
ctttttaatactgcagggtacatttttagtactttacagggggaattagt
cacacaactcccattaactttaatggaacttgtatgggcaaacactatgc
tgaaattcctaggaagttaatgtcagtagagtttactagcttctctactt
ttcttctttgggtctctactttgggctacttttactttctcacagtccac
agagaaaaccagtcaataaaaatgattaatataaatgcttcaatgtttta
taagttcacattttctatacatctgccaaaaaatttaaaaatgtaaaacc
aatgcacatagcatttttatttatttttattttttaaatttaaataacaa
gtaaattaaactaactgagagcttatatacatatgaatttgtgttgtgta
aatatgaacattgtagattcattactttcacaactttcttttttaaatta
gcttatttttttttattttttttttttttaacaaaatagtggctgctccc
ctctctggtctgttcacccatgtaagagtttgttctgaagctctgactag
gaatctgtgtgtgaaccctgaaaggtactgttcccaattggtattgatta
atcaataaagatgctagcaaccaatgggctaagcagaagaggcaggactt
ctagttttctcctaagtaggctagcagatggaggaggaaacagaatttgt
ctatgttttagaag

gaattcaagtaaacgtggtgaaaataagacttttagatgggcagtgttca
aattatatcctccactgcaataaagcttcctgtacagcaaatggattttt
aattcctttccactaacgttcttacctagaagtgattcacgctgattact
aaataacccttgtgacttgctttgtcttttgaattttaaaaatacatttg
cctggagcaatgaatttcataaaccggcagctcccatgcttgatgaatca
gtcttactttatgcagtgcagtgtggtagaaagctgagataagatattct
atccacaagctatttggtacaattcagcagcagcagcagcagctcactag
tccagtgataatacctggcttgcggattgtaatgatcagattctgttttt
atttcaaacaggagtaattccgaataccagaggttttaatttacatacat
tagtgaggttcaaatgtggcaatagctacaagcaaattcacttgcaaact
gtatgctcgccttgcataatgggttccgtttagcaattactcaccagtga
agtgcccagataaaaatgaaaacaaagagagaaaaggaaaatcatgatat
atacaccatagtgtggactaggataattgctgaaccacggtgaaggtcac
atttatatctgttttagtaatgatttcatggactcttcctctgtattgaa
ttcctaatgcaattttcatcctagactgtggggttaaactctttcttatc
tgcaaattttcgtaaaatttcaatactagctttctattatataaaaatga
aaacacattattagtagtagaaattactgataacattttaaaggactgaa
acgcatgcaaagatccattatataaactaatcttatacactcatgcacgt
gtgcatgcacacacacacacacacacacacacacacaattcccaaaaatt
cccaagtcatactaactgaaacattaataaaaccaaaaggcttgtaataa
aatactctctagttacatcaccattcacactgacacagtattggctaaat
tccagcagcatcatacgagacattttgccaccttctgatctgaagcttct
aattaagtgagataggtatgctgcaatgcaatcgatagcagctatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_5159986_5160955
seq2: B6Ng01-096L23.b_47_1010

seq1  GAATTCATTGAAATTTAAGTTCTCATTTGTATAGCTAGGGGGTGGATTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAAATTTAAGTTCTCATTTGTATAGCTAGGGGGTGGATTAC  50

seq1  AGATGTGTGTGCTTGTTTTATTACTATAATGAACAGGACTTGTATGTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGTGTGCTTGTTTTATTACTATAATGAACAGGACTTGTATGTCTA  100

seq1  ACACTAATTAAAATTCTGCTCTGATCCATATAGCTGAGGCCTCGCCCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAATTAAAATTCTGCTCTGATCCATATAGCTGAGGCCTCGCCCCCA  150

seq1  AATGAATTGTTTTTAAATCTTTATATTAAATTTATTATACATGTTCATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTGTTTTTAAATCTTTATATTAAATTTATTATACATGTTCATGA  200

seq1  TAATGAAAGTATTTATTTTTAGTATAGCGAAAGCAAAAATTAAATTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAAGTATTTATTTTTAGTATAGCGAAAGCAAAAATTAAATTCAGA  250

seq1  CTTTTTAATACTGCAGGGTACATTTTTAGTACTTTACAGGGGGAATTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAATACTGCAGGGTACATTTTTAGTACTTTACAGGGGGAATTAGT  300

seq1  CACACAACTCCCATTAACTTTAATGGAACTTGTATGGGCAAACACTATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAACTCCCATTAACTTTAATGGAACTTGTATGGGCAAACACTATGC  350

seq1  TGAAATTCCTAGGAAGTTAATGTCAGTAGAGTTTACTAGCTTCTCTACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTCCTAGGAAGTTAATGTCAGTAGAGTTTACTAGCTTCTCTACTT  400

seq1  TTCTTCTTTGGGTCTCTACTTTGGGCTACTTTTACTTTCTCACAGTCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTGGGTCTCTACTTTGGGCTACTTTTACTTTCTCACAGTCCAC  450

seq1  AGAGAAAACCAGTCAATAAAAATGATTAATATAAATGCTTCAATGTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAACCAGTCAATAAAAATGATTAATATAAATGCTTCAATGTTTTA  500

seq1  TAAGTTCACATTTTCTATACATCTGCCAAAAAATTTAAAAATGTAAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCACATTTTCTATACATCTGCCAAAAAATTTAAAAATGTAAAACC  550

seq1  AATGCACATAGCATTTTTATTTATTTTTATTTTTTAAATTTAAATAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACATAGCATTTTTATTTATTTTTATTTTTTAAATTTAAATAACAA  600

seq1  GTAAATTAAACTAACTGAGAGCTTATATACATATGAATTTGTGTTGTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTAAACTAACTGAGAGCTTATATACATATGAATTTGTGTTGTGTA  650

seq1  AATATGAACATTGTAGATTCATTACTTTCACAACTTTCTTTTTTAAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAACATTGTAGATTCATTACTTTCACAACTTTCTTTTTTAAATTA  700

seq1  GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAC-AAATAGTGGCT  749
      |       || ||||||||| |||||||||||||| || |||||||||||
seq2  G------CTTATTTTTTTTTATTTTTTTTTTTTTTAACAAAATAGTGGCT  744

seq1  GCTCCCCTC-CTGGTCTGTTCACCCATGTAAGAGTTTGTTCTGAAGCTCT  798
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCTCTCTGGTCTGTTCACCCATGTAAGAGTTTGTTCTGAAGCTCT  794

seq1  GACTAGGAATCTGTGTGTGAACCCTG-AAGGTACTGTTCCCCAATTGGTA  847
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  GACTAGGAATCTGTGTGTGAACCCTGAAAGGTACTGTT-CCCAATTGGTA  843

seq1  TTGATTAATCAATAAAGATGCTAGCAACCAAT-GGCTAAGCAGAAGAGGC  896
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTGATTAATCAATAAAGATGCTAGCAACCAATGGGCTAAGCAGAAGAGGC  893

seq1  AGGACTTCGAGTTTTCCCCTAAGGTAGGCTAGCAGATGGAAGGGAGGAGA  946
      |||||||| ||||||| ||||| |||||||||||||||||  |||||| |
seq2  AGGACTTCTAGTTTTCTCCTAA-GTAGGCTAGCAGATGGA--GGAGGA-A  939

seq1  ACAAGAATTTG-CCATG-TTTAGAAG  970
      || |||||||| | ||| ||||||||
seq2  AC-AGAATTTGTCTATGTTTTAGAAG  964


seq1: chr3_5346834_5347998
seq2: B6Ng01-096L23.g_66_1213 (reverse)

seq1  TTGATAGCTGCTATTGATTGCA-TGCAGCATTACCTAATCTTCACTAAAT  49
      |||||||||||||| ||||||| ||||||| ||||| ||| ||||| |||
seq2  TTGATAGCTGCTATCGATTGCATTGCAGCA-TACCT-ATC-TCACTTAAT  47

seq1  GTAGGAAGCTTTTCAGATTCAGAAAGGTGGCAAAAAATGTCTCGTAATGA  99
       || |||||  |||||| |||| ||||||||  |||||||||||| ||||
seq2  -TA-GAAGC--TTCAGA-TCAG-AAGGTGGC--AAAATGTCTCGT-ATGA  88

seq1  TGCTGCTGGGAATTTAGGCTCAATACTGTGGTCAGTGTGAAT-GTGATGT  148
      ||||||| |||||||||   ||||||||| |||||||||||| |||||||
seq2  TGCTGCT-GGAATTTAG--CCAATACTGT-GTCAGTGTGAATGGTGATGT  134

seq1  AACTAGAAGAGGTATTTTATTACAAGCCTTTTGGTTTTATTAAATGTTTC  198
      |||||| ||| |||||||||||||||||||||||||||||| ||||||||
seq2  AACTAG-AGA-GTATTTTATTACAAGCCTTTTGGTTTTATT-AATGTTTC  181

seq1  AGTTAGTATGACTTGGGAATTTTTGGGAATTGTGTGTGTGTGTGTGTGTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTATGACTTGGGAATTTTTGGGAATTGTGTGTGTGTGTGTGTGTG  231

seq1  TGTGTGTGTGCATGCACACGTGCATGAGTGTATAAGATTAGTTTATATAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGCATGCACACGTGCATGAGTGTATAAGATTAGTTTATATAA  281

seq1  TGGATCTTTGCATGCGTTTCAGTCCTTTAAAATGTTATCAGTAATTTCTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTTTGCATGCGTTTCAGTCCTTTAAAATGTTATCAGTAATTTCTA  331

seq1  CTACTAATAATGTGTTTTCATTTTTATATAATAGAAAGCTAGTATTGAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAATAATGTGTTTTCATTTTTATATAATAGAAAGCTAGTATTGAAA  381

seq1  TTTTACGAAAATTTGCAGATAAGAAAGAGTTTAACCCCACAGTCTAGGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACGAAAATTTGCAGATAAGAAAGAGTTTAACCCCACAGTCTAGGAT  431

seq1  GAAAATTGCATTAGGAATTCAATACAGAGGAAGAGTCCATGAAATCATTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGCATTAGGAATTCAATACAGAGGAAGAGTCCATGAAATCATTA  481

seq1  CTAAAACAGATATAAATGTGACCTTCACCGTGGTTCAGCAATTATCCTAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACAGATATAAATGTGACCTTCACCGTGGTTCAGCAATTATCCTAG  531

seq1  TCCACACTATGGTGTATATATCATGATTTTCCTTTTCTCTCTTTGTTTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACTATGGTGTATATATCATGATTTTCCTTTTCTCTCTTTGTTTTC  581

seq1  ATTTTTATCTGGGCACTTCACTGGTGAGTAATTGCTAAACGGAACCCATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATCTGGGCACTTCACTGGTGAGTAATTGCTAAACGGAACCCATT  631

seq1  ATGCAAGGCGAGCATACAGTTTGCAAGTGAATTTGCTTGTAGCTATTGCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGGCGAGCATACAGTTTGCAAGTGAATTTGCTTGTAGCTATTGCC  681

seq1  ACATTTGAACCTCACTAATGTATGTAAATTAAAACCTCTGGTATTCGGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGAACCTCACTAATGTATGTAAATTAAAACCTCTGGTATTCGGAA  731

seq1  TTACTCCTGTTTGAAATAAAAACAGAATCTGATCATTACAATCCGCAAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCTGTTTGAAATAAAAACAGAATCTGATCATTACAATCCGCAAGC  781

seq1  CAGGTATTATCACTGGACTAGTGAGCTGCTGCTGCTGCTGCTGAATTGTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATTATCACTGGACTAGTGAGCTGCTGCTGCTGCTGCTGAATTGTA  831

seq1  CCAAATAGCTTGTGGATAGAATATCTTATCTCAGCTTTCTACCACACTGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAGCTTGTGGATAGAATATCTTATCTCAGCTTTCTACCACACTGC  881

seq1  ACTGCATAAAGTAAGACTGATTCATCAAGCATGGGAGCTGCCGGTTTATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATAAAGTAAGACTGATTCATCAAGCATGGGAGCTGCCGGTTTATG  931

seq1  AAATTCATTGCTCCAGGCAAATGTATTTTTAAAATTCAAAAGACAAAGCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATTGCTCCAGGCAAATGTATTTTTAAAATTCAAAAGACAAAGCA  981

seq1  AGTCACAAGGGTTATTTAGTAATCAGCGTGAATCACTTCTAGGTAAGAAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAAGGGTTATTTAGTAATCAGCGTGAATCACTTCTAGGTAAGAAC  1031

seq1  GTTAGTGGAAAGGAATTAAAAATCCATTTGCTGTACAGGAAGCTTTATTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGGAAAGGAATTAAAAATCCATTTGCTGTACAGGAAGCTTTATTG  1081

seq1  CAGTGGAGGATATAATTTGAACACTGCCCATCTAAAAGTCTTATTTTCAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAGGATATAATTTGAACACTGCCCATCTAAAAGTCTTATTTTCAC  1131

seq1  CACGTTTACTTGAATTC  1165
      |||||||||||||||||
seq2  CACGTTTACTTGAATTC  1148


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