BAC Information

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BAC

Clone NameB6Ng01-098I08
Chromosome3 (Build37)
Map Location 53,224,810 - 53,330,149
singlet/doubletdoublet
Overlap geneLOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2
Upstream geneLOC100039762, LOC100039832, Cog6, Lhfp, LOC100039808
Downstream genePpia-ps3_416.1, LOC621155, Ufm1, EG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098I08.bB6Ng01-098I08.g
ACCDH908589DH908590
length790992
definitionDH908589|Mus musculus domesticus DNA, BAC clone: B6Ng01-098I08, 5' end.DH908590|Mus musculus domesticus DNA, BAC clone: B6Ng01-098I08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,329,360 - 53,330,149)(53,224,810 - 53,225,813)
sequence
gaattcttcacttaactgggtgaattatgtggtatgagacctgtatcttg
ataaaactgctcaaaagtaaaaaggacttactttgctgaaaatagtgtta
ttttaaggaactctggcgcacgtccctgttgcatgtgcgcactgggagaa
gtgaagggatgcttgccgtgctgagaaaggctgttgtttattctgtgcac
taatggcacaaaatctggcgtcggcataagtgggctgatttggttaacgc
tgctgcaaatggttcaattgttttaggtcctcaacctcgtgcagtcctac
gtgacccttcgagttcctctgtacgtttcctacgtgttccactcccccgt
gggcgtgggcggctggcagcatttcgacttgaagtcagagctccgactca
cattcgtgtacgacactgccatcttgtggaaccatgggatcggcagcccc
ccggaagctgagctgcaaggtgggtggctgtggctcccaaagcatctttc
ctacctgtggtaattactcagaatgataattttgtttttatttcaggtaa
aaattaggggggggcacctttcgatatcgttatttttatattctctaata
acgtgacgttttaaaacctttgtcaagcccggcgtggtggcgcacgcctt
taatcccaacactcgggaggcagaggcaggatgatttctgagttcaaggc
cagcctggtctactacgtgagttccaggacagccagggctacacagagaa
accctgtctcgaaaaaccgaagtgggggggggggaccctt
gaattccacaggagagagcaagaggacatgtgtgaaactaataaaattat
aataggatgtgagtgagattatggggctgttgaggtggctcctgcagtaa
agggactgacttgctgctaagcccgatgacctgaattcaggtcatcactg
ggtcagattccctgggtctctgttggtggaagacatgaatttgcttccac
aaaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcaccttgttggtg
tgtccatgtgaacatgcacgcgtgtgtacctatggagactcaaggtcaac
ttaggttatctttcttcaattgctttccacctttttatttcaagacagga
tctctcattggctatgctggctatccaatgagcttcagggattggcctgt
ctctgtttcccacgccttcctcatgctgggcatcacagcacagtctgtgc
ccgtttttttgtgggttctagggatgcaagcttatatcctcatgcttgtg
agacttaacagctgagccatctctcttgtcactagttgatatttgtggtc
actgacatgattttttttttccatctcatggtataaactcactttctagg
ccctaaaagcttgtactcatggaatcggtgcacctttttagctattagaa
ccacagagaaagattgatgtcctcggaagatcaaaggaaacacagcttgc
ccaactgcagtgcttccggtaatcaaacacgggttcccccgtcttccatt
tcttttcctggtgctcgttcctaaacccagtccaaagttaccttccccag
tccaggtctctgatctctaaagaagaaacagcatatttcaattctgggag
agacctaagagagtagtcttctttcctctgtggctctgggggagggcttg
cgcatcacacttttaagtcaggaaagactctgcgttcgttgtccatcaca
ctgacccggcttttaccgaggtgcagagggaagctccccagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_53329360_53330149
seq2: B6Ng01-098I08.b_44_833 (reverse)

seq1  AAGGGTCCCCCCCCCCCACTTCGGTTTTTCGAGACAGGGTTTCTCTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCCCCCCCCCCCACTTCGGTTTTTCGAGACAGGGTTTCTCTGTGT  50

seq1  AGCCCTGGCTGTCCTGGAACTCACGTTGTAGACCAGGCTGGCCTTGAACT  100
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGCCCTGGCTGTCCTGGAACTCACGTAGTAGACCAGGCTGGCCTTGAACT  100

seq1  CAGAAATCATCCTGCCTCTGCCTCCCGAGTGTTGGGATTAAAGGCGTGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCATCCTGCCTCTGCCTCCCGAGTGTTGGGATTAAAGGCGTGCG  150

seq1  CCACCACGCCGGGCTTGACAAAGGTTTTAAAACGTCACGTTATTAGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACGCCGGGCTTGACAAAGGTTTTAAAACGTCACGTTATTAGAGAA  200

seq1  TATAAAAATAACGATATCGAAAGGTGCCCCCCCCTAATTTTTACCTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAATAACGATATCGAAAGGTGCCCCCCCCTAATTTTTACCTGAAA  250

seq1  TAAAAACAAAATTATCATTCTGAGTAATTACCACAGGTAGGAAAGATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAAAATTATCATTCTGAGTAATTACCACAGGTAGGAAAGATGCT  300

seq1  TTGGGAGCCACAGCCACCCACCTTGCAGCTCAGCTTCCGGGGGGCTGCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGCCACAGCCACCCACCTTGCAGCTCAGCTTCCGGGGGGCTGCCG  350

seq1  ATCCCATGGTTCCACAAGATGGCAGTGTCGTACACGAATGTGAGTCGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATGGTTCCACAAGATGGCAGTGTCGTACACGAATGTGAGTCGGAG  400

seq1  CTCTGACTTCAAGTCGAAATGCTGCCAGCCGCCCACGCCCACGGGGGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACTTCAAGTCGAAATGCTGCCAGCCGCCCACGCCCACGGGGGAGT  450

seq1  GGAACACGTAGGAAACGTACAGAGGAACTCGAAGGGTCACGTAGGACTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACGTAGGAAACGTACAGAGGAACTCGAAGGGTCACGTAGGACTGC  500

seq1  ACGAGGTTGAGGACCTAAAACAATTGAACCATTTGCAGCAGCGTTAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGTTGAGGACCTAAAACAATTGAACCATTTGCAGCAGCGTTAACCA  550

seq1  AATCAGCCCACTTATGCCGACGCCAGATTTTGTGCCATTAGTGCACAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCCCACTTATGCCGACGCCAGATTTTGTGCCATTAGTGCACAGAA  600

seq1  TAAACAACAGCCTTTCTCAGCACGGCAAGCATCCCTTCACTTCTCCCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAACAGCCTTTCTCAGCACGGCAAGCATCCCTTCACTTCTCCCAGT  650

seq1  GCGCACATGCAACAGGGACGTGCGCCAGAGTTCCTTAAAATAACACTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACATGCAACAGGGACGTGCGCCAGAGTTCCTTAAAATAACACTATT  700

seq1  TTCAGCAAAGTAAGTCCTTTTTACTTTTGAGCAGTTTTATCAAGATACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAAAGTAAGTCCTTTTTACTTTTGAGCAGTTTTATCAAGATACAG  750

seq1  GTCTCATACCACATAATTCACCCAGTTAAGTGAAGAATTC  790
      ||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATACCACATAATTCACCCAGTTAAGTGAAGAATTC  790

seq1: chr3_53224810_53225813
seq2: B6Ng01-098I08.g_66_1057

seq1  GAATTCCACAGGAGAGAGCAAGAGGACATGTGTGAAACTAATAAAATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGGAGAGAGCAAGAGGACATGTGTGAAACTAATAAAATTAT  50

seq1  AATAGGATGTGAGTGAGATTATGGGGCTGTTGAGGTGGCTCCTGCAGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGATGTGAGTGAGATTATGGGGCTGTTGAGGTGGCTCCTGCAGTAA  100

seq1  AGGGACTGACTTGCTGCTAAGCCCGATGACCTGAATTCAGGTCATCACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTGACTTGCTGCTAAGCCCGATGACCTGAATTCAGGTCATCACTG  150

seq1  GGTCAGATTCCCTGGGTCTCTGTTGGTGGAAGACATGAATTTGCTTCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGATTCCCTGGGTCTCTGTTGGTGGAAGACATGAATTTGCTTCCAC  200

seq1  AAAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACCTTGTTGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACCTTGTTGGTG  250

seq1  TGTCCATGTGAACATGCACGCGTGTGTACCTATGGAGACTCAAGGTCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATGTGAACATGCACGCGTGTGTACCTATGGAGACTCAAGGTCAAC  300

seq1  TTAGGTTATCTTTCTTCAATTGCTTTCCACCTTTTTATTTCAAGACAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTATCTTTCTTCAATTGCTTTCCACCTTTTTATTTCAAGACAGGA  350

seq1  TCTCTCATTGGCTATGCTGGCTATCCAATGAGCTTCAGGGATTGGCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATTGGCTATGCTGGCTATCCAATGAGCTTCAGGGATTGGCCTGT  400

seq1  CTCTGTTTCCCACGCCTTCCTCATGCTGGGCATCACAGCACAGTCTGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTCCCACGCCTTCCTCATGCTGGGCATCACAGCACAGTCTGTGC  450

seq1  CCGTTTTTTTGTGGGTTCTAGGGATGCAAGCTTATATCCTCATGCTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTTTTTGTGGGTTCTAGGGATGCAAGCTTATATCCTCATGCTTGTG  500

seq1  AGACTTAACAGCTGAGCCATCTCTCTTGTCACTAGTTGATATTTGTGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAACAGCTGAGCCATCTCTCTTGTCACTAGTTGATATTTGTGGTC  550

seq1  ACTGACATGATTTTTTTTTTCCATCTCATGGTATAAACTCACTTTCTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATGATTTTTTTTTTCCATCTCATGGTATAAACTCACTTTCTAGG  600

seq1  CCCTAAAAGCTTGTACTCATGGAATCGGTGCACCTTTTTAGCTATTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAAGCTTGTACTCATGGAATCGGTGCACCTTTTTAGCTATTAGAA  650

seq1  CCACAGAGAAAGATTGATGTCCTCGGAAGATCAAAGGAAACACAGCTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGAAAGATTGATGTCCTCGGAAGATCAAAGGAAACACAGCTTGC  700

seq1  CCAACTGCAGTGCTTCCGGTAATCAAACACGGGTTCCCCCGTCTTCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGCAGTGCTTCCGGTAATCAAACACGGGTTCCCCCGTCTTCCATT  750

seq1  TCTTTTCCTGGTGCTCGTTCCTAAACCCAGTCCAAAGTTACCTTCCCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCTGGTGCTCGTTCCTAAACCCAGTCCAAAGTTACCTTCCCCAG  800

seq1  TCCAGGTCTCTGATCTCTAAAGTAGAAACAGCATATTTCAA-TCTGGGAG  849
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  TCCAGGTCTCTGATCTCTAAAGAAGAAACAGCATATTTCAATTCTGGGAG  850

seq1  AGACCTAAGAGAGTAGTCTTCTTTCCCTCTGTGGCTCT-GGGGAGGGCTT  898
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  AGACCTAAGAGAGTAGTCTTCTTT-CCTCTGTGGCTCTGGGGGAGGGCTT  899

seq1  GCGCATCACAACTCTAAAGTCAAGGCAAAGGACTCTGCGTTC-TTGTCCA  947
      ||||||||| ||| | |||||| |   || |||||||||||| |||||||
seq2  GCGCATCAC-ACTTTTAAGTCAGG---AAAGACTCTGCGTTCGTTGTCCA  945

seq1  TCACAACAGACCCCGCCTTTTACCGGAAGGGGTGCAGAGGGGAAAGCTTC  997
      |||| || || |||| ||||||||    | |||||||||||  |||||  
seq2  TCAC-ACTGA-CCCGGCTTTTACC----GAGGTGCAGAGGG--AAGCT--  985

seq1  GCCCAGC  1004
       ||||||
seq2  CCCCAGC  992