BAC Information

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BAC

Clone NameB6Ng01-099P02
Chromosome3 (Build37)
Map Location 88,676,367 - 88,677,176
singlet/doubletsinglet
Overlap gene5830417I10Rik
Upstream genePrcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11
Downstream geneMsto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099P02.bB6Ng01-099P02.g
ACCDH909592DH909593
length9351,201
definitionDH909592|Mus musculus domesticus DNA, BAC clone: B6Ng01-099P02, 5' end.DH909593|Mus musculus domesticus DNA, BAC clone: B6Ng01-099P02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccattacccatacaagtaaaattcctttaatttccacagtataat
ttataatttctttgccctcctctgcaggttgagcaggtccatgatggtca
taaagaccaggtagcgaagaagattcattgtataccacagaaatacccat
gtctccccaatttactaatatgttaattggtggagtagaaatataagccc
caatgagtgtgatttgtgactgttacatgtacgattgccacagacagcac
gctgagcaacaggttgtagtgttctgaggcttcccagatagtcaactgtc
gtttgccccccgccagccagtttcttcatctgtccccatggagagtgatc
agctgtctgcttcaaaatctttggttttttttccttcttaaagccatgct
gtccacatcatcggccaagccttcttcttttgctcatgtcagatttcaat
tagttttgctggagcccacagggtttttcctcttagagaaatgaaggcat
atcctctaccccatcagaatgccttcccggctttccattctcatgttaag
acttcctttttttgttttgtttttaattttattttattcccttcctgatc
taccttctcactgttccccatcccctgtctccacattatgttcccctcca
cccccctcaaccccacctgacctctgaactccctggggtttccagtctct
tgacttacttaggtcaagagttaggttaggtgcatcttctctgactgaac
ccagacccagcagccctctgctatatatgtgttggcctcataccagctgg
tatactgcctggtttgatgttacagtgtctaagagatcttgggtgtccag
gttaattgagactgctggtccttctaacaaggctgccgtcctcctcagca
tcttttttttttttttaattttttttttatttatt
gaattccttgtcctcctccaaagcattggcccagagcaggtaagatggct
tatataggtctaagtacttgttgtgtaaactcgatgaccagagtttgatc
cctggagctaatataaatgtggaaagagataaccaacttgacaaagttat
cctttgacctccatatacatgctgtaggatgaacttccttcacacaaaca
tacacagcacacacatgcatgcccgcacccacaggacatatatatgttga
aatgcagcaaaaaactgatgtcttagtggttgagaccactggcagaagac
cctagttcgattctcagcaatcacatggtagctcacaatcatctgtagct
gccttagtactagggaaatctgacatcttctggcctttataggtcattca
ctgagtgcacagacaagtgtagaaaaaaattctcagacataataataaca
acaacaaccaaacttaaacaaaaagcaggtacctaaggatggcacataaa
agctgacaaaagctggcacaagggggccaggcgagatgtcaagtagctag
aagacttatgcactgttgtcaatttgctggtaagaaagtaagaaagactt
aaggagtcatggagttttctgtgtgatttcagagagtagctgtggccagg
gaatgtgcagtagggttggcattcttgcaagggggcactggagggccagt
gcttcaagctgtgaaggcaaagcctaaattgaaatggaggttccaggaaa
attggaaatacctggaccatggaatattcagtatgcagaggagtgggcat
ggaacggagctagtctagaaaagaatcccaataggtgctatagtaaagat
gagggagttggctctgcccatgagccccaaatgacagataaaggagttat
aagacttagttttactctgctagattttatttgctgtttgatgttcctgt
tatgcttaaattcttcctcttaaaacaggaatgtgctgtaatgttgggaa
tatgtaactgtttttttttttttattcataggtaagaaactgactttatt
cttttctttttttgagagaagtaccactatatagccactcgcctggcttg
acttccagatacccactggccccttctttcctaaatctagaataaggcta
ttgcgcgccacatctcgtacatcagaaacccgtaacgtttgcattatatg
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88676367_88677176
seq2: B6Ng01-099P02.b_45_854

seq1  GAATTCCATTACCCATACAAGTAAAATTCCTTTAATTTCCACAGTATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTACCCATACAAGTAAAATTCCTTTAATTTCCACAGTATAAT  50

seq1  TTATAATTTCTTTGCCCTCCTCTGCAGGTTGAGCAGGTCCATGATGGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTTCTTTGCCCTCCTCTGCAGGTTGAGCAGGTCCATGATGGTCA  100

seq1  TAAAGACCAGGTAGCGAAGAAGATTCATTGTATACCACAGAAATACCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACCAGGTAGCGAAGAAGATTCATTGTATACCACAGAAATACCCAT  150

seq1  GTCTCCCCAATTTACTAATATGTTAATTGGTGGAGTAGAAATATAAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCCAATTTACTAATATGTTAATTGGTGGAGTAGAAATATAAGCCC  200

seq1  CAATGAGTGTGATTTGTGACTGTTACATGTACGATTGCCACAGACAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGTGTGATTTGTGACTGTTACATGTACGATTGCCACAGACAGCAC  250

seq1  GCTGAGCAACAGGTTGTAGTGTTCTGAGGCTTCCCAGATAGTCAACTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCAACAGGTTGTAGTGTTCTGAGGCTTCCCAGATAGTCAACTGTC  300

seq1  GTTTGCCCCCCGCCAGCCAGTTTCTTCATCTGTCCCCATGGAGAGTGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCCCCCGCCAGCCAGTTTCTTCATCTGTCCCCATGGAGAGTGATC  350

seq1  AGCTGTCTGCTTCAAAATCTTTGGTTTTTTTTCCTTCTTAAAGCCATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCTGCTTCAAAATCTTTGGTTTTTTTTCCTTCTTAAAGCCATGCT  400

seq1  GTCCACATCATCGGCCAAGCCTTCTTCTTTTGCTCATGTCAGATTTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACATCATCGGCCAAGCCTTCTTCTTTTGCTCATGTCAGATTTCAAT  450

seq1  TAGTTTTGCTGGAGCCCACAGGGTTTTTCCTCTTAGAGAAATGAAGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTGCTGGAGCCCACAGGGTTTTTCCTCTTAGAGAAATGAAGGCAT  500

seq1  ATCCTCTACCCCATCAGAATGCCTTCCCGGCTTTCCATTCTCATGTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTACCCCATCAGAATGCCTTCCCGGCTTTCCATTCTCATGTTAAG  550

seq1  ACTTCCTTTTTTTGTTTTGTTTTTAATTTTATTTTATTCCCTTCCTGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTTTTTTGTTTTGTTTTTAATTTTATTTTATTCCCTTCCTGATC  600

seq1  TACCTTCTCACTGTTCCCCATCCCCTGTCTCCACATTATGTTCCCCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCTCACTGTTCCCCATCCCCTGTCTCCACATTATGTTCCCCTCCA  650

seq1  CCCCCCTCAACCCCACCTGACCTCTGAACTCCCTGGGGTTTCCAGTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCTCAACCCCACCTGACCTCTGAACTCCCTGGGGTTTCCAGTCTCT  700

seq1  TGACTTACTTAGGTCAAGAGTTAGGTTAGGTGCATCTTCTCTGACTGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTACTTAGGTCAAGAGTTAGGTTAGGTGCATCTTCTCTGACTGAAC  750

seq1  CCAGACCCAGCAGCCCTCTGCTATATATGTGTTGGCCTCATACCAGCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCCAGCAGCCCTCTGCTATATATGTGTTGGCCTCATACCAGCTGG  800

seq1  TATACTGCCT  810
      ||||||||||
seq2  TATACTGCCT  810