BAC Information

Click to search

BAC

Clone NameB6Ng01-100N22
Chromosome3 (Build37)
Map Location 29,402,976 - 29,568,551
singlet/doubletdoublet
Overlap gene6130401L20Rik
Upstream geneTnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream geneLOC100040676, Evi1, Mds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100N22.bB6Ng01-100N22.g
ACCDH910237DH910238
length8391,082
definitionDH910237|Mus musculus domesticus DNA, BAC clone: B6Ng01-100N22, 5' end.DH910238|Mus musculus domesticus DNA, BAC clone: B6Ng01-100N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,402,976 - 29,403,814)(29,567,458 - 29,568,551)
sequence
gaattcaaatctattacttttatttaaaggtaaaaattaatagctacttt
atgtagagatgtttcttagttatttcaggtcctattgtaatttttgtccc
agagcaaagctgtgctagttctcttggaagcatcatatttaattcttgaa
gatgttgtcatttgtcattacagatggagtgatagccttgatggtatcat
tgaacctttgtcatgactaacctggaagactggctatgtgtcagaaaatt
ttctcattcatcttgctttcaaagaccaaatttatttgcaaccttgaatg
acattggctacatgaaacggcctgaaatctatcatgtctgagtcttataa
aactacaatttaaaaccctaagagttgacctcgtttttagaaccatcttc
aaagtcaatgacttttgaaatatttacttatgactcttgagggttttttt
cagctgataacaatagctttatgtttgtatgtaatatttttccgagtaca
tgaggtctcctaacatataccacatgttcttattttattttagagaaagt
cagaaattaatgtcatttaaaacgcatgtatatgtcatatgttcatcaat
gtcagtgagcaactggaaagtcaacagatcaagacagtcagggtttaacc
tctccttatattattcagattattcagctaagaattgaagcagtcagctt
acattgtcagaagaattgcatgaaagtagtttatatttttctttttttct
gtaattaagatatatatatctatatatcatatatatatataatgtgttgt
gtgtatgtatcatggtatatatatatatatatgtatata
gaattcatggcacatctcatgaacaggtaagtgactggaggaaagagaag
atttctctttttccaaacctggtcaaatgatttcagtctgtgtttgtgtc
tccaaactacatttattctgattttaaataggcaaagcagcagagattta
agaatgaaacattcaagtgtttcttctttatgaaggagcatgtatagata
ttctgataaataaactataacacaaatataatactgacagtttccacttt
attttttatatttgtttacttgtttatttatctatttaggtacatgtgta
tatatgtgtgcacatgggatgaggtcagggaacagctgttgggagggatt
tatttaattccaccatgtgaatcctagatttgaattcaggatgtcagggt
tatagctgacatactgaatagggtcatttacttaatgaaccatcaacaca
acctattaccccacagttccatttctacaaatacctctatttatgtcttt
attatttaaaaaaatggaagctaagagatgacaaattttataggaaggtc
tgcaaaactgagtactttggtcctgtttttctacaaaatctcccattcca
tcatttgatgacattaactatttgttgtggtttgtatatgcttggcccag
gaagtggcactattaggaggtgtggccttgttggaatatgtgtgtcaatg
tgggtgtggagtttaagaccttcatcctgggctagagagatggctcagtt
gttaagagcaccgactgctcttttctgggttcgaggccagcctggtctac
aaagtgagttccaggacagccaggggggaaatcatcatcatcatcaacaa
caacaacaacaaaacctaaaaaccaaccaacaaaacctcatcctaactgc
atggaagccaatcttctcctttttgccttagagaggtgtagactctcaat
tcctcttacaccatgcctgcctgatactgccatgatctatcctagagata
tggacagaacctctgatcctgtaagccagcccaattaaaagtttgcctta
ttagagttgccttgtgtcatgttatgtctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_29402976_29403814
seq2: B6Ng01-100N22.b_47_885

seq1  GAATTCAAATCTATTACTTTTATTTAAAGGTAAAAATTAATAGCTACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCTATTACTTTTATTTAAAGGTAAAAATTAATAGCTACTTT  50

seq1  ATGTAGAGATGTTTCTTAGTTATTTCAGGTCCTATTGTAATTTTTGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAGATGTTTCTTAGTTATTTCAGGTCCTATTGTAATTTTTGTCCC  100

seq1  AGAGCAAAGCTGTGCTAGTTCTCTTGGAAGCATCATATTTAATTCTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAAGCTGTGCTAGTTCTCTTGGAAGCATCATATTTAATTCTTGAA  150

seq1  GATGTTGTCATTTGTCATTACAGATGGAGTGATAGCCTTGATGGTATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGTCATTTGTCATTACAGATGGAGTGATAGCCTTGATGGTATCAT  200

seq1  TGAACCTTTGTCATGACTAACCTGGAAGACTGGCTATGTGTCAGAAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTTTGTCATGACTAACCTGGAAGACTGGCTATGTGTCAGAAAATT  250

seq1  TTCTCATTCATCTTGCTTTCAAAGACCAAATTTATTTGCAACCTTGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTCATCTTGCTTTCAAAGACCAAATTTATTTGCAACCTTGAATG  300

seq1  ACATTGGCTACATGAAACGGCCTGAAATCTATCATGTCTGAGTCTTATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGCTACATGAAACGGCCTGAAATCTATCATGTCTGAGTCTTATAA  350

seq1  AACTACAATTTAAAACCCTAAGAGTTGACCTCGTTTTTAGAACCATCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACAATTTAAAACCCTAAGAGTTGACCTCGTTTTTAGAACCATCTTC  400

seq1  AAAGTCAATGACTTTTGAAATATTTACTTATGACTCTTGAGGGTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAATGACTTTTGAAATATTTACTTATGACTCTTGAGGGTTTTTTT  450

seq1  CAGCTGATAACAATAGCTTTATGTTTGTATGTAATATTTTTCCGAGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGATAACAATAGCTTTATGTTTGTATGTAATATTTTTCCGAGTACA  500

seq1  TGAGGTCTCCTAACATATACCACATGTTCTTATTTTATTTTAGAGAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCTCCTAACATATACCACATGTTCTTATTTTATTTTAGAGAAAGT  550

seq1  CAGAAATTAATGTCATTTAAAACGCATGTATATGTCATATGTTCATCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATTAATGTCATTTAAAACGCATGTATATGTCATATGTTCATCAAT  600

seq1  GTCAGTGAGCAACTGGAAAGTCAACAGATCAAGACAGTCAGGGTTTAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGAGCAACTGGAAAGTCAACAGATCAAGACAGTCAGGGTTTAACC  650

seq1  TCTCCTTATATTATTCAGATTATTCAGCTAAGAATTGAAGCAGTCAGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTATATTATTCAGATTATTCAGCTAAGAATTGAAGCAGTCAGCTT  700

seq1  ACATTGTCAGAAGAATTGCATGAAAGTAGTTTATATTTTTCTTTTTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTCAGAAGAATTGCATGAAAGTAGTTTATATTTTTCTTTTTTTCT  750

seq1  GTAATTAAGATATATATATCTATATATCATATATATATATAATGTGTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAAGATATATATATCTATATATCATATATATATATAATGTGTTGT  800

seq1  GTGTATGTATCATGGTATATATATATATATATGTATATA  839
      |||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTATCATGGTATATATATATATATATGTATATA  839

seq1: chr3_29567458_29568551
seq2: B6Ng01-100N22.g_70_1150 (reverse)

seq1  CCAGAC--TACATGAC-CAAGGCAACTCTTATAAAGACAACTTTTAATTG  47
      ||||||   ||||||| |||||||||||| |||| |  ||||||||||| 
seq2  CCAGACATAACATGACACAAGGCAACTCTAATAAGGCAAACTTTTAATT-  49

seq1  GGGCTGGCTTACAGGTTCAGAGGTTCTGTCCATTATCTTCTA-GATAGGA  96
      ||||||||||||||| |||||||||||||||| |||| |||| |||| ||
seq2  GGGCTGGCTTACAGGATCAGAGGTTCTGTCCA-TATC-TCTAGGATA-GA  96

seq1  TCATGGCAGTATCAGGCAGGCATGGTGTAAGAGGAATTGAGAGTTCTACA  146
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCATGGCAGTATCAGGCAGGCATGGTGTAAGAGGAATTGAGAG-TCTACA  145

seq1  CCTTCTTCTAAAGGCAAAAAGGAGAAGATTGGCTTCCATGCAGTTAGGAT  196
      |||   ||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCT--CTCT-AAGGCAAAAAGGAGAAGATTGGCTTCCATGCAGTTAGGAT  192

seq1  GAAGGTTTTTTGTTTTGGTTTGGTTTTTTAGGTTTTTGTTGTTGTTGTTG  246
      | ||||||    | ||||||  | |||||||| |||||||||||||||||
seq2  G-AGGTTT----TGTTGGTT--GGTTTTTAGG-TTTTGTTGTTGTTGTTG  234

seq1  TTGATGATGATGATGATTTTCCCCCCTGGCTGTCCTGGAACTCACTTTGT  296
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTGATGATGATGATGA-TTTCCCCCCTGGCTGTCCTGGAACTCACTTTGT  283

seq1  AGACCAGGCTGGCCTCGAACCCAGAAATGAGCAGTCGGTGCTCTTAACAA  346
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGACCAGGCTGGCCTCGAACCCAGAAAAGAGCAGTCGGTGCTCTTAACAA  333

seq1  CTGAGCCATCTCTCTAGCCCAGGATGAAGGTCTTAAACTCCACACCCACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCATCTCTCTAGCCCAGGATGAAGGTCTTAAACTCCACACCCACA  383

seq1  TTGACACACATATTCCAACAAGGCCACACCTCCTAATAGTGCCACTTCCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACACATATTCCAACAAGGCCACACCTCCTAATAGTGCCACTTCCT  433

seq1  GGGCCAAGCATATACAAACCACAACAAATAGTTAATGTCATCAAATGATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAAGCATATACAAACCACAACAAATAGTTAATGTCATCAAATGATG  483

seq1  GAATGGGAGATTTTGTAGAAAAACAGGACCAAAGTACTCAGTTTTGCAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGAGATTTTGTAGAAAAACAGGACCAAAGTACTCAGTTTTGCAGA  533

seq1  CCTTCCTATAAAATTTGTCATCTCTTAGCTTCCATTTTTTTAAATAATAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTATAAAATTTGTCATCTCTTAGCTTCCATTTTTTTAAATAATAA  583

seq1  AGACATAAATAGAGGTATTTGTAGAAATGGAACTGTGGGGTAATAGGTTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAAATAGAGGTATTTGTAGAAATGGAACTGTGGGGTAATAGGTTG  633

seq1  TGTTGATGGTTCATTAAGTAAATGACCCTATTCAGTATGTCAGCTATAAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATGGTTCATTAAGTAAATGACCCTATTCAGTATGTCAGCTATAAC  683

seq1  CCTGACATCCTGAATTCAAATCTAGGATTCACATGGTGGAATTAAATAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACATCCTGAATTCAAATCTAGGATTCACATGGTGGAATTAAATAAA  733

seq1  TCCCTCCCAACAGCTGTTCCCTGACCTCATCCCATGTGCACACATATATA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCAACAGCTGTTCCCTGACCTCATCCCATGTGCACACATATATA  783

seq1  CACATGTACCTAAATAGATAAATAAACAAGTAAACAAATATAAAAAATAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTACCTAAATAGATAAATAAACAAGTAAACAAATATAAAAAATAA  833

seq1  AGTGGAAACTGTCAGTATTATATTTGTGTTATAGTTTATTTATCAGAATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAACTGTCAGTATTATATTTGTGTTATAGTTTATTTATCAGAATA  883

seq1  TCTATACATGCTCCTTCATAAAGAAGAAACACTTGAATGTTTCATTCTTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACATGCTCCTTCATAAAGAAGAAACACTTGAATGTTTCATTCTTA  933

seq1  AATCTCTGCTGCTTTGCCTATTTAAAATCAGAATAAATGTAGTTTGGAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTGCTGCTTTGCCTATTTAAAATCAGAATAAATGTAGTTTGGAGA  983

seq1  CACAAACACAGACTGAAATCATTTGACCAGGTTTGGAAAAAGAGAAATCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACACAGACTGAAATCATTTGACCAGGTTTGGAAAAAGAGAAATCT  1033

seq1  TCTCTTTCCTCCAGTCACTTACCTGTTCATGAGATGTGCCATGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCCTCCAGTCACTTACCTGTTCATGAGATGTGCCATGAATTC  1081