BAC Information

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BAC

Clone NameB6Ng01-100P11
Chromosome16 (Build37)3 (Build37)
Map Location 4,317,816 - 4,318,93497,578,736 - 97,578,903
singlet/doubletsingletsinglet
Overlap geneAdcy9
Upstream geneLOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1, Crebbp, EG436332
Downstream geneEG620313, Srl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100P11.bB6Ng01-100P11.g
ACCDH910301DH910302
length1,129144
definitionDH910301|Mus musculus domesticus DNA, BAC clone: B6Ng01-100P11, 5' end.DH910302|Mus musculus domesticus DNA, BAC clone: B6Ng01-100P11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,317,816 - 4,318,934)(97,578,736 - 97,578,903)
sequence
gaattcctggacagatagcctagccaaaaagcagtgtgctccaggtacag
ctgggagacccatagtgcctcaagggaatgaagtaaaaagtgacagagca
ggacaaccaatgtcctctgctggcatcatacaagcacacacaagaacata
cattcgtatatgtatgtatgtatgtatctgcatataccacatacacagac
acatacgcatgtgcacacaaactcaaaggaaagacatacgccttctgaag
acagagtggtttgtggacactggggtttggcccctgactaccatggaact
tgactctggctgcctttcctgtcacaaggaaataatcctgacaccttgat
ctgctgggctctggtcacctgaaatgacccaagatgctgtaacttccact
ttggctcttctgagtagctctactggcacagacacactaaagggagtgta
accatcccgtaaacagtatttctacaggctaaggagtttgctggctgttg
cctgggtaaccggagagtccttggaaactcaccaagagcatgcctcaaca
cttccccctcccacctcggtgggcacaggctttgaaggaaaacccaaagc
cattcctctaatacatatgaacccattttcatttgcttctaacatgtttc
cacgcatgcaccctgattctggtcagaacacatggtatagagctgcagag
tggggttgctggacttttttggtttgtttttattcaggctgtttcccatt
ataagataaatcattttgaagttaacacctgtccctttccataactgcca
cagagaagcctcttttgggggatggaaatatcagtcctggttttgcctgt
ttagtctactgattactgactagtttagcaagtgtgtccctggtactaga
agcagcatccttctactcaaggctcacttggacatgggttggctggggtg
agcatcactatggacacccacattcattcactgaaatcccttttaagcct
ccactgtctcaatgtttcctcctcacatcgtgctttaacatatggttcag
taaattctcatttttattcaggaggaaaccaaagatggttgaagagtagg
gggctatagcacaccagctagtataccac
cttgttctgaggcagaggtggtggatctctgagtttgaaccagtctggtc
tacaaaatgagttccagaacagccacaactacacagaaaaagcctgtctc
aaaaagtaaaaattaaaaaaaaaggggggggggaggaagagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_4317816_4318934
seq2: B6Ng01-100P11.b_40_1169

seq1  GGAATTCCTGGACAGATAGCCTAGCCAAAAAGCAGTGTGCTCCAGGTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCCTGGACAGATAGCCTAGCCAAAAAGCAGTGTGCTCCAGGTACA  50

seq1  GCTGGGAGACCCATAGTGCCTCAAGGGAATGAAGTAAAAAGTGACAGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAGACCCATAGTGCCTCAAGGGAATGAAGTAAAAAGTGACAGAGC  100

seq1  AGGACAACCAATGTCCTCTGCTGGCATCATACAAGCACACACAAGAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAACCAATGTCCTCTGCTGGCATCATACAAGCACACACAAGAACAT  150

seq1  ACATTCGTATATGTATGTATGTATGTATCTGCATATACCACATACACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCGTATATGTATGTATGTATGTATCTGCATATACCACATACACAGA  200

seq1  CACATACGCATGTGCACACAAACTCAAAGGAAAGACATACGCCTTCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACGCATGTGCACACAAACTCAAAGGAAAGACATACGCCTTCTGAA  250

seq1  GACAGAGTGGTTTGTGGACACTGGGGTTTGGCCCCTGACTACCATGGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGTGGTTTGTGGACACTGGGGTTTGGCCCCTGACTACCATGGAAC  300

seq1  TTGACTCTGGCTGCCTTTCCTGTCACAAGGAAATAATCCTGACACCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCTGGCTGCCTTTCCTGTCACAAGGAAATAATCCTGACACCTTGA  350

seq1  TCTGCTGGGCTCTGGTCACCTGAAATGACCCAAGATGCTGTAACTTCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGGGCTCTGGTCACCTGAAATGACCCAAGATGCTGTAACTTCCAC  400

seq1  TTTGGCTCTTCTGAGTAGCTCTACTGGCACAGACACACTAAAGGGAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTCTTCTGAGTAGCTCTACTGGCACAGACACACTAAAGGGAGTGT  450

seq1  AACCATCCCGTAAACAGTATTTCTACAGGCTAAGGAGTTTGCTGGCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCCCGTAAACAGTATTTCTACAGGCTAAGGAGTTTGCTGGCTGTT  500

seq1  GCCTGGGTAACCGGAGAGTCCTTGGAAACTCACCAAGAGCATGCCTCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGTAACCGGAGAGTCCTTGGAAACTCACCAAGAGCATGCCTCAAC  550

seq1  ACTTCCCCCTCCCACCTCGGTGGGCACAGGCTTTGAAGGAAAACCCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCCCTCCCACCTCGGTGGGCACAGGCTTTGAAGGAAAACCCAAAG  600

seq1  CCATTCCTCTAATACATATGAACCCATTTTCATTTGCTTCTAACATGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCTCTAATACATATGAACCCATTTTCATTTGCTTCTAACATGTTT  650

seq1  CCACGCATGCACCCTGATTCTGGTCAGAACACATGGTATAGAGCTGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCATGCACCCTGATTCTGGTCAGAACACATGGTATAGAGCTGCAGA  700

seq1  GTGGGGTTGCTGGACTTTTTTGGTTTGTTTTTATTCAAGGCTGTTTCCCA  750
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTGGGGTTGCTGGACTTTTTTGGTTTGTTTTTATTC-AGGCTGTTTCCCA  749

seq1  TTATAAGATAAATCATTTTGAAGTTAACACCTGTCCCTTTCCATAACTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGATAAATCATTTTGAAGTTAACACCTGTCCCTTTCCATAACTGC  799

seq1  CACAGAGAAGCCTC-TTTGGGGGATGGAAATATCAGTCCTGGTTTTGCCT  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CACAGAGAAGCCTCTTTTGGGGGATGGAAATATCAGTCCTGGTTTTGCCT  849

seq1  GTTTAGTCTACTGATTACTGACTAG-TTAGCAAGTGTGT-CCTGGTACTA  897
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  GTTTAGTCTACTGATTACTGACTAGTTTAGCAAGTGTGTCCCTGGTACTA  899

seq1  GAAGCAGCATCC-TCTACTACAAGGCTCACTTGGACAT-GGCTGGCTGGG  945
      |||||||||||| |||||| |||||||||||||||||| || ||||||||
seq2  GAAGCAGCATCCTTCTACT-CAAGGCTCACTTGGACATGGGTTGGCTGGG  948

seq1  GTGAGCATCACTATGACAACACACA-TCAATCACTGAAATCCCCTCTAAG  994
      |||||||||||||||   || |||| ||| ||||||||||||| | ||||
seq2  GTGAGCATCACTATGGACACCCACATTCATTCACTGAAATCCCTTTTAAG  998

seq1  -CTCCACCTGTCTCAATGTTTCCTCCTCACATCGT-CCTTAACATA-GGC  1041
       ||||| |||||||||||||||||||||||||||| | |||||||| || 
seq2  CCTCCA-CTGTCTCAATGTTTCCTCCTCACATCGTGCTTTAACATATGGT  1047

seq1  TCAGTAAATTC-CA-TTTTACTCAGGAGGAAACC-AAGAT-GTAGAAGAG  1087
      ||||||||||| || ||||| ||||||||||||| ||||| || ||||||
seq2  TCAGTAAATTCTCATTTTTATTCAGGAGGAAACCAAAGATGGTTGAAGAG  1097

seq1  -AAGGGGCTATAGTCACA-CAGCTAGAATACCAC  1119
       | |||||||||| |||| ||||||| |||||||
seq2  TAGGGGGCTATAG-CACACCAGCTAGTATACCAC  1130

seq1: chr3_97578736_97578903
seq2: B6Ng01-100P11.g_166_217

seq1  CCTGTCTCAAA----AAAAATT--ATAAAAAGGGGGGGGGGAGGAACGGA  44
      |||||||||||    |||||||  | ||||||||||||||||||||  ||
seq2  CCTGTCTCAAAAAGTAAAAATTAAAAAAAAAGGGGGGGGGGAGGAAGAGA  50

seq1  GGGGGAGGAGAGACAGAGAGACAGACAGAGACAGAGTGGTGAACAAGTAT  94
      ||                                                
seq2  GG------------------------------------------------  52

seq1  TCTTGTATTAGGGTTTTGTTCGTTTTGTTTTGTTATGGGTACCTTTCTCT  144
                                                        
seq2  --------------------------------------------------  52

seq1  TTTATCTATTAGAGAACTGAGAGG  168
                              
seq2  ------------------------  52