BAC Information

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BAC

Clone NameB6Ng01-102J02
Chromosome3 (Build37)
Map Location 141,095,633 - 141,230,519
singlet/doubletdoublet
Overlap geneUnc5c, LOC100039923
Upstream geneLOC621343, 4930590L14Rik, Pdha2
Downstream geneBmpr1b, Gabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102J02.bB6Ng01-102J02.g
ACCDH911424DH911425
length1,1011,158
definitionDH911424|Mus musculus domesticus DNA, BAC clone: B6Ng01-102J02, 5' end.DH911425|Mus musculus domesticus DNA, BAC clone: B6Ng01-102J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,095,633 - 141,096,733)(141,229,247 - 141,230,519)
sequence
gaattcccaacagaggaattttgaaaggtcaagaagaacttaaagaaatg
tccagcatctcttttcatcagggaaatgtaaatcaaaaggaccctgagag
tccaccttaaaaccaatcaggatggctaagatcaaaaattcaaatgaaaa
cacatgctgatgaggatatgggaaagaaggaatattcctccattactgat
aggattgcaaactggtatacacactgtagaaatcaatctggcagttcctc
agaaaattggaaatagttctacctgaagactcagctatatagtattgctg
gacatataaccaaagatgctctaccataccacaaggacatggtccactgt
gttcataggagctatccacagtcacgcagaggtgatgggcataaacaaat
tcagcatgtattattgcaatcgctaaagttacttcttggcaatctgtcat
tgtgttaaagctaggcctctaagctactatagacttgggtggtctgctct
gagcatctttactttggcaggtgtcccgagcatctccaaattgaaaaata
aattaccttcagtaagagtaatacgcaattcaaaaaaaaaagcacaatat
ttgctacaagttgcgagtcatctaagacttcatattaaatcttgctctta
tcaaaatattaatactgcttggctgaacaagaacttattacccacaaaga
gaaatttccttttcttttttcccttcctggtacattgtagcaactccctt
ttcctcaatctttaatataatgttcttatctccttccatcgtactgcaat
ctatctttccatgtggagagccttcataggactatagtgtttctctttgt
tgtaatattcagagaatgttttaatagttttcattattctataagtttaa
tggaaacatcttcttaatttaatgtaagccaacaagaacaatctgagaaa
attaaaatgaatttttaattgctcagaaatttattcagtctttttggttt
cattctgctttgacttagggtcttactatgatccctgctgcattctgtat
gtattggcatgaagattactctgtagctaaagactgttcacccagatgtg
a
gaattctctctctctctctctctctctctctctctctctcttgtaaataa
tatgatctcagtaggttcttccaggatcatgttagaaacctgggcttgtg
attaccttaattcagtgatatgatgataacaaattcttatgcccctctaa
ctgcttccattctagttcaggaacaatgtaaagatggtacttggaaatac
agagaattagtaaattggattgggattttagagagcttgcttaggaaaaa
tattagataatagatgattagaataatgaagccggatgaaatctactcag
ttatcttaaggagcaagaatagctaatgtgggtaattttgggtgatgttc
agcttgtctaacaccactaagggaagacagtcagcacagtctgggtgagt
atggcaaggggctaggctaccaggtgggcttttcagaaggaccaaggaag
gtcccggagatcttggcttttattcttttccaagtacaattagatttcat
tgaagtccaaaaactatcaattttaactactcagtataactttgcattct
caacatgatacttcttctgtattgtaatttttaaaaggttccattggtcc
ctgctattctcaacacagttcaatactatgagattaaaacattcttttgc
accctattagcagcaataccctttagagtctggaaactttggaaatctaa
ttagcaatgtctctatacttagaacttgctgacgttttatatttaataat
atgccccttttgttatctcattgtctctgtcttttctttcgatttttttt
atcttcctttaaagatgtaaaacaaaaatttatgttactaggttgatttt
tacacacagcgagaggcattaaaaagcttcttcttaagttttgtgctgtc
tctttctactattatttattttgttgatgttctgggaagatcgttaattt
ttaaatctaagtattggtaagatttgtcctgtacattctcgtttgattaa
tgaatattgtttccacttaaaataaagaataaaaatcaggctacgtatac
aaaatacctggatttaagccaatttaactttttcctttacataaatattt
cattttccaatccaatggtctcccgaaatcctatacaggatactggagga
aatggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_141095633_141096733
seq2: B6Ng01-102J02.b_45_1145

seq1  GAATTCCCAACAGAGGAATTTTGAAAGGTCAAGAAGAACTTAAAGAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAACAGAGGAATTTTGAAAGGTCAAGAAGAACTTAAAGAAATG  50

seq1  TCCAGCATCTCTTTTCATCAGGGAAATGTAAATCAAAAGGACCCTGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCATCTCTTTTCATCAGGGAAATGTAAATCAAAAGGACCCTGAGAG  100

seq1  TCCACCTTAAAACCAATCAGGATGGCTAAGATCAAAAATTCAAATGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTTAAAACCAATCAGGATGGCTAAGATCAAAAATTCAAATGAAAA  150

seq1  CACATGCTGATGAGGATATGGGAAAGAAGGAATATTCCTCCATTACTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCTGATGAGGATATGGGAAAGAAGGAATATTCCTCCATTACTGAT  200

seq1  AGGATTGCAAACTGGTATACACACTGTAGAAATCAATCTGGCAGTTCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGCAAACTGGTATACACACTGTAGAAATCAATCTGGCAGTTCCTC  250

seq1  AGAAAATTGGAAATAGTTCTACCTGAAGACTCAGCTATATAGTATTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTGGAAATAGTTCTACCTGAAGACTCAGCTATATAGTATTGCTG  300

seq1  GACATATAACCAAAGATGCTCTACCATACCACAAGGACATGGTCCACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATAACCAAAGATGCTCTACCATACCACAAGGACATGGTCCACTGT  350

seq1  GTTCATAGGAGCTATCCACAGTCACGCAGAGGTGATGGGCATAAACAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAGGAGCTATCCACAGTCACGCAGAGGTGATGGGCATAAACAAAT  400

seq1  TCAGCATGTATTATTGCAATCGCTAAAGTTACTTCTTGGCAATCTGTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATGTATTATTGCAATCGCTAAAGTTACTTCTTGGCAATCTGTCAT  450

seq1  TGTGTTAAAGCTAGGCCTCTAAGCTACTATAGACTTGGGTGGTCTGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTAAAGCTAGGCCTCTAAGCTACTATAGACTTGGGTGGTCTGCTCT  500

seq1  GAGCATCTTTACTTTGGCAGGTGTCCCGAGCATCTCCAAATTGAAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCTTTACTTTGGCAGGTGTCCCGAGCATCTCCAAATTGAAAAATA  550

seq1  AATTACCTTCAGTAAGAGTAATACGCAATTCAAAAAAAAAAGCACAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCTTCAGTAAGAGTAATACGCAATTCAAAAAAAAAAGCACAATAT  600

seq1  TTGCTACAAGTTGCGAGTCATCTAAGACTTCATATTAAATCTTGCTCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACAAGTTGCGAGTCATCTAAGACTTCATATTAAATCTTGCTCTTA  650

seq1  TCAAAATATTAATACTGCTTGGCTGAACAAGAACTTATTACCCACAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATATTAATACTGCTTGGCTGAACAAGAACTTATTACCCACAAAGA  700

seq1  GAAATTTCCTTTTCTTTTTTCCCTTCCTGGTACATTGTAGCAACTCCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTCCTTTTCTTTTTTCCCTTCCTGGTACATTGTAGCAACTCCCTT  750

seq1  TTCCTCAATCTTTAATATAATGTTCTTATCTCCTTCCATCGTACTGCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAATCTTTAATATAATGTTCTTATCTCCTTCCATCGTACTGCAAT  800

seq1  CTATCTTTCCATGTGGAGAGCCTTCATAGGACTATAGTGTTTCTCTTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTTCCATGTGGAGAGCCTTCATAGGACTATAGTGTTTCTCTTTGT  850

seq1  TGTAATATTCAGAGAATGTTTTAATAGTTTTCATTATTCTATAAGTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATTCAGAGAATGTTTTAATAGTTTTCATTATTCTATAAGTTTAA  900

seq1  TGGAAACATCTTCTTAA-TTAATGTAAGCCAACAAGAACAATCTGAGAAA  949
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGGAAACATCTTCTTAATTTAATGTAAGCCAACAAGAACAATCTGAGAAA  950

seq1  ATTAAAATGAATGTAT-ATTGCTCAGAAA-TTATTCAGGTCTTTTTGGTT  997
      |||||||||||| | | |||||||||||| ||||||| ||||||||||||
seq2  ATTAAAATGAATTTTTAATTGCTCAGAAATTTATTCA-GTCTTTTTGGTT  999

seq1  TCATTCTGCTTTGAACTAGGGTCTTACTATGAATCCCTGGCTGGCATTCT  1047
      ||||||||||||||  ||||||||||||||| |||||| ||| |||||||
seq2  TCATTCTGCTTTGACTTAGGGTCTTACTATG-ATCCCT-GCT-GCATTCT  1046

seq1  GTATGTA-TGGCATGAAGATTACTCTGTAGCTAAAGGACTG-TCACCCAG  1095
      ||||||| ||||||||||||||||||||||||||| ||||| ||||||||
seq2  GTATGTATTGGCATGAAGATTACTCTGTAGCTAAA-GACTGTTCACCCAG  1095

seq1  ATGTGA  1101
      ||||||
seq2  ATGTGA  1101

seq1: chr3_141229247_141230519
seq2: B6Ng01-102J02.g_67_1224 (reverse)

seq1  ATTCCATTTCCTCTCTGTCCATTCCCATTTTCAGACAGAGAGAAAGTCTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTGTTTTCAAAGGAAAATCACTACACCACAGTATGCATGAAAAAGATTGT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCTGTTGGTCATCTCCATGTCCCAAGACTGAGAATTTCA-TTCTTTCAGT  149
                                       ||| || ||| | ||||
seq2  ---------------------------------ATTCCATTTCCTCCAGT  17

seq1  ATCCTG-ATAGGATCT-GGGAGA-CAATGGATTG--AAATG-AATATTTA  193
      |||||| ||||||| | |||||| || |||||||  ||||| ||||||||
seq2  ATCCTGTATAGGATTTCGGGAGACCATTGGATTGGAAAATGAAATATTTA  67

seq1  TGTAAA-GAAAAAGTTAA--TTGCTT-AATC--AGTATTTGTATAAACGT  237
      |||||| |||||||||||  | |||| ||||   |||||| | || ||||
seq2  TGTAAAGGAAAAAGTTAAATTGGCTTAAATCCAGGTATTT-TGTATACGT  116

seq1  AGCCTGATTTT--ATCTTTA-TTTAAGT-GAAACAATA-TCATTAATCAA  282
      |||||||||||   |||||| ||||||| ||||||||| |||||||||||
seq2  AGCCTGATTTTTATTCTTTATTTTAAGTGGAAACAATATTCATTAATCAA  166

seq1  ACGAGAATGTACAGGACAAATCTTACCAATACTTAGATTTAAAAATTAAC  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAATGTACAGGACAAATCTTACCAATACTTAGATTTAAAAATTAAC  216

seq1  GATCTTCCCAGAACATCAACAAAATAAATAATAGTAGAAAGAGACAGCAC  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCCCAGAACATCAACAAAATAAATAATAGTAGAAAGAGACAGCAC  266

seq1  AAAACTTAAGAAGAAGCTTTTTAATGCCTCTCGCTGTGTGTAAAAGTCAA  432
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAACTTAAGAAGAAGCTTTTTAATGCCTCTCGCTGTGTGTAAAAATCAA  316

seq1  CCTAGTAACATAAATTTTTGTTTTACATCTTT-AAGGAAGATAAAAAAAA  481
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCTAGTAACATAAATTTTTGTTTTACATCTTTAAAGGAAGATAAAAAAAA  366

seq1  TCGAAAGAAAAGACAGAGACAATGAGATAACAAAAGGGGCATATTATTAA  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAAGAAAAGACAGAGACAATGAGATAACAAAAGGGGCATATTATTAA  416

seq1  ATATAAAACGTCAGCAAGTTCTAAGTATAGAGACATTGCTAATTAGATTT  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAACGTCAGCAAGTTCTAAGTATAGAGACATTGCTAATTAGATTT  466

seq1  CCAAAGTTTCCAGACTCTAAAGGGTATTGCTGCTAATAGGGTGCAAAAGA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTTCCAGACTCTAAAGGGTATTGCTGCTAATAGGGTGCAAAAGA  516

seq1  ATGTTTTAATCTCATAGTATTGAACTGTGTTGAGAATAGCAGGGACCAAT  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTAATCTCATAGTATTGAACTGTGTTGAGAATAGCAGGGACCAAT  566

seq1  GGAACCTTTTAAAAATTACAATACAGAAGAAGTATCATGTTGAGAATGCA  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTTTTAAAAATTACAATACAGAAGAAGTATCATGTTGAGAATGCA  616

seq1  AAGTTATACTGAGTAGTTAAAATTGATAGTTTTTGGACTTCAATGAAATC  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATACTGAGTAGTTAAAATTGATAGTTTTTGGACTTCAATGAAATC  666

seq1  TAATTGTACTTGGAAAAGAATAAAAGCCAAGATCTCCGGGACCTTCCTTG  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTACTTGGAAAAGAATAAAAGCCAAGATCTCCGGGACCTTCCTTG  716

seq1  GTCCTTCTGAAAAGCCCACCTGGTAGCCTAGCCCCTTGCCATACTCACCC  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCTGAAAAGCCCACCTGGTAGCCTAGCCCCTTGCCATACTCACCC  766

seq1  AGACTGTGCTGACTGTCTTCCCTTAGTGGTGTTAGACAAGCTGAACATCA  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTGCTGACTGTCTTCCCTTAGTGGTGTTAGACAAGCTGAACATCA  816

seq1  CCCAAAATTACCCACATTAGCTATTCTTGCTCCTTAAGATAACTGAGTAG  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAATTACCCACATTAGCTATTCTTGCTCCTTAAGATAACTGAGTAG  866

seq1  ATTTCATCCGGCTTCATTATTCTAATCATCTATTATCTAATATTTTTCCT  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATCCGGCTTCATTATTCTAATCATCTATTATCTAATATTTTTCCT  916

seq1  AAGCAAGCTCTCTAAAATCCCAATCCAATTTACTAATTCTCTGTATTTCC  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGCTCTCTAAAATCCCAATCCAATTTACTAATTCTCTGTATTTCC  966

seq1  AAGTACCATCTTTACATTGTTCCTGAACTAGAATGGAAGCAGTTAGAGGG  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCATCTTTACATTGTTCCTGAACTAGAATGGAAGCAGTTAGAGGG  1016

seq1  GCATAAGAATTTGTTATCATCATATCACTGAATTAAGGTAATCACAAGCC  1181
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGAATTTGTTATCATCATATCACTGAATTAAGGTAATCACAAGCC  1066

seq1  CAGGTTTCTAACATGATCCTGGAAGAACCTACTGAGATCATATTATTTAC  1231
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTCTAACATGATCCTGGAAGAACCTACTGAGATCATATTATTTAC  1116

seq1  AAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATTC  1273
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATTC  1158