BAC Information

Click to search

BAC

Clone NameB6Ng01-102L19
Chromosome3 (Build37)
Map Location 95,306,281 - 95,453,536
singlet/doubletdoublet
Overlap geneCtsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa
Upstream geneSnx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt
Downstream geneMcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102L19.bB6Ng01-102L19.g
ACCDH911543DH911544
length1,0581,046
definitionDH911543|Mus musculus domesticus DNA, BAC clone: B6Ng01-102L19, 5' end.DH911544|Mus musculus domesticus DNA, BAC clone: B6Ng01-102L19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,452,466 - 95,453,536)(95,306,281 - 95,307,329)
sequence
gaattctattcagtctttcctatctgaaccttctgacagatttaataagg
tgtcacagaggctatggatctagcttgggcagatgcttgcctagcaggca
cagaccctgtgtttgtgcccaccccaccccacccccagtaccattcacac
ggggtatggtggtacacaccataatcctagcccttgggaagtagaggcag
gtggaccaggagtttaaggtcatccttggctacaaagtgagttctaggct
acactaggatacatgagttcctgcctcaaaagaaaaaacagtccattttt
ttctttttaatatacgattaatgtatttgttactcaaacaagaggctcat
tatgggattttcatatatgtacattgtttttgttgttttgttttgttttg
ttttgttttgttttgttttgttttgttttgttgagacagggtttctctgt
gtagccctggctgtcctggaactcactctgtagaccaggctggcctcgaa
ctcagaaatccgcctgcttctgcctcccaagtgctgggcatttatgtata
ttacacatgtattttgcacatattccctcccctactgacccttttcctct
tctaaaatagtccccttctactttcaagtctaatatgtatgtgcagtcta
gatttttcttacaagagaaaacatatgtctttctcggcatgatttctttc
aatcttgtttatggctgagtcaactgcacactatgtatacaccctccatt
ttctatatgtattcatctgtctctccgtcccctggctgccatgactagag
ccacgggagtgggtaagcaagtgtctgtggaacactacttgtgtttctgg
caatgaacactcaaactgcattggaccacacaagattcattcgtatggac
agccagcatcgtcccccttcatgctcccaaaaaaactcctgaactgcgtc
tgtgcttaaaggatcgcaaaggatccaggtggtttcagcatcttcatcaa
tggtctactggctactgaagggctcagtagcaagtcagccacaaggtgct
ttccacta
gaattcaggaaaactgtcgccagagctataaagtccccactgtacttgac
ttcagttaaaggagacagtggtcacagttgtcatcaatggggacaatagc
agggcttcacaacaaagacagtctttatggttgagtgtttgtgggtggag
ttttctcaggctggcagagagacccaccctctgtgaagagtgatggctga
caggtcctctgtatgtttctcagggccagtgtggttcctgttgggctttc
agctctgccggggccctggagggccaactcaagaagaaaactggtaaact
cttagctctgagtccccagaatcttgtggactgtgtgactgagaattatg
gctgtggaggcggctatatgaccactgccttccaatacgtgcagcagaac
ggaggcattgactctgaagatgcttacccatatgtgggccaggtgagacc
accgtagtatgtagccgtgggctgctccttccccgggcatggttttgttt
tctgttagcatatcctgctcctttccattttttttttccttttaattttg
agacaatatcttactctgtatcccaaactgatcaactaggtatcctaggc
tggccaccctttttttgagacaagatctcatatagcccatgttgtcctta
aaagtactatgtagctgaagacaaccctgaattcttcctacctcaagctt
ccaacaggcctgggttccagacatggctatcctgttttcctaatagaatt
atttgccatagaaggccaagattctcataatcatggaaaacattgagcca
tctcttcagccccgtgacatttttaatgcagttggggactgacgggtagt
agagttccttggaatatgggaccttttaaaagaggaactgcacgtttcag
tgatagaaatataggcaactatgagtaaaatatgttcagtttgttttcta
aagtcagctgttcctgatatttaatggaaatgtcacagcatacctcaaat
catactgctgtcgtagcaaaaacaagaatcataaaatgaattattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95452466_95453536
seq2: B6Ng01-102L19.b_47_1104 (reverse)

seq1  TTGTGGAAATGCACCTTGTGGCTCCCTTGCCTTTGAAGCCCTCCAGTGAC  50
      | ||||||| |||||||||||||  |||||   || |||||| ||||  |
seq2  TAGTGGAAA-GCACCTTGTGGCTGACTTGCTACTG-AGCCCTTCAGTAGC  48

seq1  CAGTGTGAGCATTTGAGAAGGATGCTGGAACCACACTGTGGTGCCTCTGC  100
      ||||  || || ||||  | ||||||| ||||||    |||  ||| |||
seq2  CAGT-AGACCA-TTGATGAAGATGCTGAAACCAC---CTGGATCCTTTGC  93

seq1  GCTGCCTTCAAGCAAAGAC-CAGATGCCGGAGTTTCTTCTGGGAGCATGA  149
      | | |||| ||||| |||| ||| | | ||||||| || |||||||||||
seq2  GAT-CCTTTAAGCACAGACGCAG-TTCAGGAGTTT-TTTTGGGAGCATGA  140

seq1  AGGGGGACGATGCTTGACTGTCCATAAGAATGAATGCTTGTGTGGTCCAG  199
      ||||||||||||| || ||||||||| |||||||| ||||||||||||| 
seq2  AGGGGGACGATGC-TGGCTGTCCATACGAATGAAT-CTTGTGTGGTCCA-  187

seq1  CTGCAGCTCTGAGTGTCCACTCCAAGGAACCCAAGCTAGTG-TCCACAGA  248
       ||||| | ||||||| || | | || ||| |||| ||||| ||||||||
seq2  ATGCAG-TTTGAGTGTTCATTGCCAGAAACACAAG-TAGTGTTCCACAGA  235

seq1  CACCTGCTTAGCCACTACCGTGGCTCTAGTCATGGCAGCCAGGGGACGGA  298
      ||| |||||| ||||| |||||||||||||||||||||||||||||||||
seq2  CACTTGCTTACCCACTCCCGTGGCTCTAGTCATGGCAGCCAGGGGACGGA  285

seq1  GAGACAGATGAATACATATAGAAAATGGAGGGTGTATACATAGAGTGCAG  348
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAGACAGATGAATACATATAGAAAATGGAGGGTGTATACATAGTGTGCAG  335

seq1  TTGACTCAGCCATAAACAAGAATGAAAGAAATCATGCCGAGAAAGACAAA  398
      ||||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  TTGACTCAGCCATAAACAAGATTGAAAGAAATCATGCCGAGAAAGACATA  385

seq1  TGTTTTCTCTTGTAAGAAAAATCTAGACTGCACATACATATTCGACTTGA  448
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTTTTCTCTTGTAAGAAAAATCTAGACTGCACATACATATTAGACTTGA  435

seq1  AAGTAGAAGGGGACTATTTTAGAAGAGGAAAAGGGTCAGTAGGGGAGGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAGGGGACTATTTTAGAAGAGGAAAAGGGTCAGTAGGGGAGGGA  485

seq1  ATATGTGCAAAATACATGTGTAATATACATAAATGCCCAGCACTTGGGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGCAAAATACATGTGTAATATACATAAATGCCCAGCACTTGGGAG  535

seq1  GCAGAAGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTG  585

seq1  AGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAACAAAACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAACAAAACA  635

seq1  AAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAACAAAAACAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAACAAAAACAA  685

seq1  TGTACATATATGAAAATCCCATAATGAGCCTCTTGTTTGAGTAACAAATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATATATGAAAATCCCATAATGAGCCTCTTGTTTGAGTAACAAATA  735

seq1  CATTAATCGTATATTAAAAAGAAAAAAATGGACTGTTTTTTCTTTTGAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATCGTATATTAAAAAGAAAAAAATGGACTGTTTTTTCTTTTGAGG  785

seq1  CAGGAACTCATGTATCCTAGTGTAGCCTAGAACTCACTTTGTAGCCAAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACTCATGTATCCTAGTGTAGCCTAGAACTCACTTTGTAGCCAAGG  835

seq1  ATGACCTTAAACTCCTGGTCCACCTGCCTCTACTTCCCAAGGGCTAGGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTTAAACTCCTGGTCCACCTGCCTCTACTTCCCAAGGGCTAGGAT  885

seq1  TATGGTGTGTACCACCATACCCCGTGTGAATGGTACTGGGGGTGGGGTGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGTGTACCACCATACCCCGTGTGAATGGTACTGGGGGTGGGGTGG  935

seq1  GGTGGGCACAAACACAGGGTCTGTGCCTGCTAGGCAAGCATCTGCCCAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCACAAACACAGGGTCTGTGCCTGCTAGGCAAGCATCTGCCCAAG  985

seq1  CTAGATCCATAGCCTCTGTGACACCTTATTAAATCTGTCAGAAGGTTCAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCCATAGCCTCTGTGACACCTTATTAAATCTGTCAGAAGGTTCAG  1035

seq1  ATAGGAAAGACTGAATAGAATTC  1071
      |||||||||||||||||||||||
seq2  ATAGGAAAGACTGAATAGAATTC  1058

seq1: chr3_95306281_95307329
seq2: B6Ng01-102L19.g_65_1110

seq1  GAATTCAGGAAAACTGTCGCCAGAGCTATAAAGTCCCCACTGTACTTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAAAACTGTCGCCAGAGCTATAAAGTCCCCACTGTACTTGAC  50

seq1  TTCAGTTAAAGGAGACAGTGGTCACAGTTGTCATCAATGGGGACAATAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTAAAGGAGACAGTGGTCACAGTTGTCATCAATGGGGACAATAGC  100

seq1  AGGGCTTCACAACAAAGACAGTCTTTATGGTTGAGTGTTTGTGGGTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTCACAACAAAGACAGTCTTTATGGTTGAGTGTTTGTGGGTGGAG  150

seq1  TTTTCTCAGGCTGGCAGAGAGACCCACCCTCTGTGAAGAGTGATGGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAGGCTGGCAGAGAGACCCACCCTCTGTGAAGAGTGATGGCTGA  200

seq1  CAGGTCCTCTGTATGTTTCTCAGGGCCAGTGTGGTTCCTGTTGGGCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCTCTGTATGTTTCTCAGGGCCAGTGTGGTTCCTGTTGGGCTTTC  250

seq1  AGCTCTGCCGGGGCCCTGGAGGGCCAACTCAAGAAGAAAACTGGTAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGCCGGGGCCCTGGAGGGCCAACTCAAGAAGAAAACTGGTAAACT  300

seq1  CTTAGCTCTGAGTCCCCAGAATCTTGTGGACTGTGTGACTGAGAATTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTCTGAGTCCCCAGAATCTTGTGGACTGTGTGACTGAGAATTATG  350

seq1  GCTGTGGAGGCGGCTATATGACCACTGCCTTCCAATACGTGCAGCAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGAGGCGGCTATATGACCACTGCCTTCCAATACGTGCAGCAGAAC  400

seq1  GGAGGCATTGACTCTGAAGATGCTTACCCATATGTGGGCCAGGTGAGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCATTGACTCTGAAGATGCTTACCCATATGTGGGCCAGGTGAGACC  450

seq1  ACCGTAGTATGTAGCCGTGGGCTGCTCCTTCCCCGGGCATGGTTTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTAGTATGTAGCCGTGGGCTGCTCCTTCCCCGGGCATGGTTTTGTTT  500

seq1  TCTGTTAGCATATCCTGCTCCTTTCCATTTTTTTTTTCCTTTTAATTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAGCATATCCTGCTCCTTTCCATTTTTTTTTTCCTTTTAATTTTG  550

seq1  AGACAATATCTTACTCTGTATCCCAAACTGATCAACTAGGTATCCTAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATATCTTACTCTGTATCCCAAACTGATCAACTAGGTATCCTAGGC  600

seq1  TGGCCACCCTTTTTTTGAGACAAGATCTCATATAGCCCATGTTGTCCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACCCTTTTTTTGAGACAAGATCTCATATAGCCCATGTTGTCCTTA  650

seq1  AAAGTACTATGTAGCTGAAGACAACCCTGAATTCTTCCTACCTCAAGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTATGTAGCTGAAGACAACCCTGAATTCTTCCTACCTCAAGCTT  700

seq1  CCAACAGGCCTGGGTTCCAGACATGGCTATCCTGTTTTCCTAATAGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGGCCTGGGTTCCAGACATGGCTATCCTGTTTTCCTAATAGAATT  750

seq1  ATTTGCCATAGAAGGCCAAGATTCTCATAATCATGGAAAACATTGAGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCATAGAAGGCCAAGATTCTCATAATCATGGAAAACATTGAGCCA  800

seq1  TCTCTTCAGCCCCGTGACATTTTTAATGCAGTT-GGGACTGACGGGTAGT  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTCTTCAGCCCCGTGACATTTTTAATGCAGTTGGGGACTGACGGGTAGT  850

seq1  AGAGTTCCTTGGAATAT-GGACC-TTTAAAAGAGGAACTGCACGTTTCAG  897
      ||||||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  AGAGTTCCTTGGAATATGGGACCTTTTAAAAGAGGAACTGCACGTTTCAG  900

seq1  TGATAGAAATATAGGCAACTATGAGTTAAAATATGTTCAGTTTGTTTTCT  947
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGATAGAAATATAGGCAACTATGAG-TAAAATATGTTCAGTTTGTTTTCT  949

seq1  TAAAAGGTCAGCTGTTCCTTGATATTT-ATGGAAATGTCACAGCATA-CT  995
         || |||||||||||| |||||||| ||||||||||||||||||| ||
seq2  ---AAAGTCAGCTGTTCC-TGATATTTAATGGAAATGTCACAGCATACCT  995

seq1  CAAATTCATACTGCTGTATGTAGCAAAACCAAGATTTTATAAAATGTATT  1045
      |||| ||||||||||||  ||||||||| |||||  | |||||||| |||
seq2  CAAA-TCATACTGCTGT-CGTAGCAAAAACAAGA-ATCATAAAATGAATT  1042

seq1  ATTG  1049
      ||||
seq2  ATTG  1046