BAC Information

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BAC

Clone NameB6Ng01-102P11
Chromosome3 (Build37)
Map Location 40,499,343 - 40,611,811
singlet/doubletdoublet
Overlap geneIntu, Slc25a31, Hspa4l, Plk4
Upstream geneLOC100041443, LOC100041458, LOC100040882
Downstream geneMfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102P11.bB6Ng01-102P11.g
ACCDH911705DH911706
length1,1561,056
definitionDH911705|Mus musculus domesticus DNA, BAC clone: B6Ng01-102P11, 5' end.DH911706|Mus musculus domesticus DNA, BAC clone: B6Ng01-102P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,610,637 - 40,611,811)(40,499,343 - 40,500,403)
sequence
gaattcccagtctatggaagaaaaaaatatgtaaatcttttttaagccaa
ggactgtttatcccatctccacttataaaataagtgggaaaaaaaccaaa
aaatcaatatatatatataaaatttaatcaagtgaaactttctagggtaa
ttatcttatttcttttttgagacagggtctcacttatgctgcctagctgg
tgttagaagccatgaaatcgtgatccctatgcctcagcctcccaagtggt
ctaattaaaggtatgggtcaccacagcctgctgctattattttttaaaaa
aggccttaaatgatcagttatatagaactttagtttttcagtattaaact
ctcaatcttgatcacaatttattcttaaataacttgtaaagcttcttgtc
ctcacattctcattagaagggaaaatattttgtattaagcaaaatacttt
aaaattagagcagaatttatataaagtttttccccccatctcagaaaagc
ccatattaccaaataaaaataacctggaaataagtaagtacaagattata
agactaattaatatatagggcaattttgaagtttaaaaaaccaaaccaac
caaccaaatatataaggtcatattaacttattttagacttgtgaaactca
aacatgtcatttgagaaggagaacagactccttgacaagacaactctgcc
taatgagagccacacctcaacactccccagacaacagtgtttggtgtaag
atgatctcctcctcccgatgctgtcttctaattctcttttcccacccacc
ttctgtgagtgttagtcattagtaggggatacttaatctccacattacta
ataatgacctagggacacccgcttaaacatttaggtttcaatatgagtaa
ctattggcagactaaaattttcacatcagcttcttacaagtgaagcatct
tttgatgactttatgtgttgcataacagctgatttgacacagcatagcag
acagagcagcagcatctagcctaagctagactacttaagatcctgctctt
cgctcatcacagagagctgtgcaaacagatcttgtgtacagtttgcctca
tgtataatagctttgtctatttacattgaaactagaaataatatatattg
ttaaat
gaattcacttacacaagaagagtgggtgcatggccaccagcttcttagtc
atggaaatatttcctaagtgcaggtgtgttcctatatgcaatagtacttg
ccaagaagtgctttttatctgaagttagggcaaaagtatgataacttatt
aaaatagtgctctgaaaacctaacatgttagattttgatattcaatattt
ccatgtgtgagtgtttactttttaatagttaaaacacttttaaacaaata
aatgtgaatctggccttctatgataagctgaactcccttcaaaaacccca
gggttccatttagcagttaactgcaaaatttgaggtcatttcattactgc
cataccagatttttaaaatgcatacattgttttgacattatgcccagtaa
aaaaaaaaactttcaagtgtaatagcttatacaaatccacatgtataaat
aacagggttttttactttaaaagatgccaaacatgtataacttattcatc
aaagatgtggagagctcattttaagagcattttattagataaatgtattg
tgtgacccacctttataaatatatggcgtaaaagatatcttttacaccaa
gcattttattcaatggcaaagtcacatccaactctctatttcaacaatcc
cagctgcacccccctccatccccatgagaccgttttgcatgaaggtccct
gcttttactgcattggcctcccaactcctgatactcagcagtggagagag
agtaaaagttagggtacagaaaggacacttggctacagggtcaggcaaac
cctcggtggcagtgcatctgaagtcaggcacatccctgtgctggacacgt
gcccatggctaaaaggaccacagtaacatttaatatcatgcatgggccat
tatggaattgaactaggtactttcaaacacactctggcacatagaagaca
ttcaggataactgttatttcttgccttttagttacgttgttaactcttct
ccttcaggaaacgtaaacattatagttctgctagctagctgagattaacc
caggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_40610637_40611811
seq2: B6Ng01-102P11.b_48_1203 (reverse)

seq1  ATTTAACATATATA-ATTATTTTCTTAAGTTTTCATTGTAAATAGGAACA  49
      |||||||| ||||| |||| |||||  || ||||| |||||||||  |||
seq2  ATTTAACA-ATATATATTA-TTTCT--AG-TTTCAATGTAAATAG--ACA  43

seq1  AAGCTATTTATACATGA-GCAAACTGTACAC-AGATCTTGGTTTGCACAG  97
      |||||| |||||||||| ||||||||||||| ||||||  ||||||||||
seq2  AAGCTA-TTATACATGAGGCAAACTGTACACAAGATCT--GTTTGCACAG  90

seq1  CTTCTCTGTGATGAGGCGGAAGAGCCAGGATTCTTAAGTAGTCCTAGCTT  147
      | |||||||||||||   |||||| ||||| ||||||||||| |||||||
seq2  C-TCTCTGTGATGAG--CGAAGAG-CAGGA-TCTTAAGTAGT-CTAGCTT  134

seq1  AGGCTAGATGCTGCTGCTTCTGTTCTGCTTATGCCTGTGTCAAAATCAGC  197
      ||||||||||||||||| |||| ||||| |||| ||||||| ||||||||
seq2  AGGCTAGATGCTGCTGC-TCTG-TCTGC-TATG-CTGTGTC-AAATCAGC  179

seq1  TGTTATTGCAACACATAAAGTCATCAAAAGATGCTTCACTTGTAAGAAGC  247
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTA-TGCAACACATAAAGTCATCAAAAGATGCTTCACTTGTAAGAAGC  228

seq1  TGATGTGAAAATTTTAGTCTGCCAATAGTTACTCATATTGAAACCTAAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGAAAATTTTAGTCTGCCAATAGTTACTCATATTGAAACCTAAAT  278

seq1  GTTTAAGCGGGTGTCCCTAGGTCATTATTAGTAATGTGGAGATTAAGTAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGCGGGTGTCCCTAGGTCATTATTAGTAATGTGGAGATTAAGTAT  328

seq1  CCCCTACTAATGACTAACACTCACAGAAGGTGGGTGGGAAAAGAGAATTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACTAATGACTAACACTCACAGAAGGTGGGTGGGAAAAGAGAATTA  378

seq1  GAAGACAGCATCGGGAGGAGGAGATCATCTTACACCAAACACTGTTGTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGCATCGGGAGGAGGAGATCATCTTACACCAAACACTGTTGTCT  428

seq1  GGGGAGTGTTGAGGTGTGGCTCTCATTAGGCAGAGTTGTCTTGTCAAGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTGTTGAGGTGTGGCTCTCATTAGGCAGAGTTGTCTTGTCAAGGA  478

seq1  GTCTGTTCTCCTTCTCAAATGACATGTTTGAGTTTCACAAGTCTAAAATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTCTCCTTCTCAAATGACATGTTTGAGTTTCACAAGTCTAAAATA  528

seq1  AGTTAATATGACCTTATATATTTGGTTGGTTGGTTTGGTTTTTTAAACTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATATGACCTTATATATTTGGTTGGTTGGTTTGGTTTTTTAAACTT  578

seq1  CAAAATTGCCCTATATATTAATTAGTCTTATAATCTTGTACTTACTTATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTGCCCTATATATTAATTAGTCTTATAATCTTGTACTTACTTATT  628

seq1  TCCAGGTTATTTTTATTTGGTAATATGGGCTTTTCTGAGATGGGGGGAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTTATTTTTATTTGGTAATATGGGCTTTTCTGAGATGGGGGGAAA  678

seq1  AACTTTATATAAATTCTGCTCTAATTTTAAAGTATTTTGCTTAATACAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTATATAAATTCTGCTCTAATTTTAAAGTATTTTGCTTAATACAAA  728

seq1  ATATTTTCCCTTCTAATGAGAATGTGAGGACAAGAAGCTTTACAAGTTAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCCCTTCTAATGAGAATGTGAGGACAAGAAGCTTTACAAGTTAT  778

seq1  TTAAGAATAAATTGTGATCAAGATTGAGAGTTTAATACTGAAAAACTAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATAAATTGTGATCAAGATTGAGAGTTTAATACTGAAAAACTAAA  828

seq1  GTTCTATATAACTGATCATTTAAGGCCTTTTTTAAAAAATAATAGCAGCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATATAACTGATCATTTAAGGCCTTTTTTAAAAAATAATAGCAGCA  878

seq1  GGCTGTGGTGACCCATACCTTTAATTAGACCACTTGGGAGGCTGAGGCAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGGTGACCCATACCTTTAATTAGACCACTTGGGAGGCTGAGGCAT  928

seq1  AGGGATCACGATTTCATGGCTTCTAACACCAGCTAGGCAGCATAAGTGAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCACGATTTCATGGCTTCTAACACCAGCTAGGCAGCATAAGTGAG  978

seq1  ACCCTGTCTCAAAAAAGAAATAAGATAATTACCCTAGAAAGTTTCACTTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTCAAAAAAGAAATAAGATAATTACCCTAGAAAGTTTCACTTG  1028

seq1  ATTAAATTTTATATATATATATTGATTTTTTGGTTTTTTTCCCACTTATT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTTTATATATATATATTGATTTTTTGGTTTTTTTCCCACTTATT  1078

seq1  TTATAAGTGGAGATGGGATAAACAGTCCTTGGCTTAAAAAAGATTTACAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGTGGAGATGGGATAAACAGTCCTTGGCTTAAAAAAGATTTACAT  1128

seq1  ATTTTTTTCTTCCATAGACTGGGAATTC  1175
      ||||||||||||||||||||||||||||
seq2  ATTTTTTTCTTCCATAGACTGGGAATTC  1156

seq1: chr3_40499343_40500403
seq2: B6Ng01-102P11.g_69_1124

seq1  GAATTCACTTACACAAGAAGAGTGGGTGCATGGCCACCAGCTTCTTAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTACACAAGAAGAGTGGGTGCATGGCCACCAGCTTCTTAGTC  50

seq1  ATGGAAATATTTCCTAAGTGCAGGTGTGTTCCTATATGCAATAGTACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATATTTCCTAAGTGCAGGTGTGTTCCTATATGCAATAGTACTTG  100

seq1  CCAAGAAGTGCTTTTTATCTGAAGTTAGGGCAAAAGTATGATAACTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGTGCTTTTTATCTGAAGTTAGGGCAAAAGTATGATAACTTATT  150

seq1  AAAATAGTGCTCTGAAAACCTAACATGTTAGATTTTGATATTCAATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTGCTCTGAAAACCTAACATGTTAGATTTTGATATTCAATATTT  200

seq1  CCATGTGTGAGTGTTTACTTTTTAATAGTTAAAACACTTTTAAACAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGTGAGTGTTTACTTTTTAATAGTTAAAACACTTTTAAACAAATA  250

seq1  AATGTGAATCTGGCCTTCTATGATAAGCTGAACTCCCTTCAAAAACCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAATCTGGCCTTCTATGATAAGCTGAACTCCCTTCAAAAACCCCA  300

seq1  GGGTTCCATTTAGCAGTTAACTGCAAAATTTGAGGTCATTTCATTACTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCCATTTAGCAGTTAACTGCAAAATTTGAGGTCATTTCATTACTGC  350

seq1  CATACCAGATTTTTAAAATGCATACATTGTTTTGACATTATGCCCAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCAGATTTTTAAAATGCATACATTGTTTTGACATTATGCCCAGTAA  400

seq1  AAAAAAAAACTTTCAAGTGTAATAGCTTATACAAATCCACATGTATAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACTTTCAAGTGTAATAGCTTATACAAATCCACATGTATAAAT  450

seq1  AACAGGGTTTTTTACTTTAAAAGATGCCAAACATGTATAACTTATTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGTTTTTTACTTTAAAAGATGCCAAACATGTATAACTTATTCATC  500

seq1  AAAGATGTGGAGAGCTCATTTTAAGAGCATTTTATTAGATAAATGTATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTGGAGAGCTCATTTTAAGAGCATTTTATTAGATAAATGTATTG  550

seq1  TGTGACCCACCTTTATAAATATATGGCGTAAAAGATATCTTTTACACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCCACCTTTATAAATATATGGCGTAAAAGATATCTTTTACACCAA  600

seq1  GCATTTTATTCAATGGCAAAGTCACATCCAACTCTCTATTTCAACAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTATTCAATGGCAAAGTCACATCCAACTCTCTATTTCAACAATCC  650

seq1  CAGCTGCACCCCCCTCCATCCCCATGAGACCGTTTTGCATGAAGGTCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCACCCCCCTCCATCCCCATGAGACCGTTTTGCATGAAGGTCCCT  700

seq1  GCTTTTACTGCATTGGCCTCCCAACTCCTGATACTCAGCAGTGGAGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTACTGCATTGGCCTCCCAACTCCTGATACTCAGCAGTGGAGAGAG  750

seq1  AGTAAAAGTTAGGGTACAGAAAGGACACTTGGCTACAGGGTCAGGCAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAGTTAGGGTACAGAAAGGACACTTGGCTACAGGGTCAGGCAAAC  800

seq1  CCTCGGTGGCAGTGCATCTGAAGTCAGGCACATCCCTGTGCTGGACACGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGTGGCAGTGCATCTGAAGTCAGGCACATCCCTGTGCTGGACACGT  850

seq1  GCCCATGGCTAAAAGGACCACAGTAACATTTAATATCATGCAT-GGCCAT  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCCCATGGCTAAAAGGACCACAGTAACATTTAATATCATGCATGGGCCAT  900

seq1  TATGGAATTGAACTAAGGTACTTTCAAACACACTCTGGCACATAGAAGAC  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TATGGAATTGAACT-AGGTACTTTCAAACACACTCTGGCACATAGAAGAC  949

seq1  ATTCAGGATAACTGTTATTTCTTGCCTTTTAGTTACGTTGTTAACTCTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGATAACTGTTATTTCTTGCCTTTTAGTTACGTTGTTAACTCTTC  999

seq1  TTCCTTCAGGGAAACGTAAACATTATAGGTTCTGCTAAGCTAGCTGAGAT  1049
       ||||||| |||||||||||||||||| |||||||| |||||||||||||
seq2  -TCCTTCA-GGAAACGTAAACATTATA-GTTCTGCT-AGCTAGCTGAGAT  1045

seq1  TAAACACAGGAG  1061
      | ||| ||||||
seq2  T-AACCCAGGAG  1056