BAC Information

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BAC

Clone NameB6Ng01-107N02
Chromosome3 (Build37)
Map Location 117,908,390 - 118,028,527
singlet/doubletdoublet
Overlap genenone
Upstream geneD3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneDpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107N02.bB6Ng01-107N02.g
ACCDH915172DH915173
length1,130892
definitionDH915172|Mus musculus domesticus DNA, BAC clone: B6Ng01-107N02, 5' end.DH915173|Mus musculus domesticus DNA, BAC clone: B6Ng01-107N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,908,390 - 117,909,530)(118,027,636 - 118,028,527)
sequence
gaattcaggttctggcacctgcatcagacagcttacaaccaccagtaacc
ccagttatacacagatacatataagtacatataacaaaatgtaaaataag
tatttaattggaaagacaggacagatagtatcacggaacatataagtcct
ttaataatgaagaagtagccagataatcaagaaaacaagacaatttctgc
atgttcatacatgtaatatcatcacctcgacaattgaagtaaaagctgat
tcaataagagaagaaatgggtaagtgtccagttaatgtcaccttttatta
ctctcaatatctgatagaatgtatagagagacaatgagtaaaaatataac
aaaacctaattcatttttatgatgcattctattcaatcacccaaacatca
aaatattattgtgatgaatatgaagggaaatctacaaataaatgatttga
gagtttaataaattgtcagaataaatggtcaacatatagaattatgttta
agaggccaatataatttgcagattagtttgtgtgtagtatatgtgtatgt
gcatgggtgaggtagaggttgccgtagacatcaggtattttttcagttgt
ttttcaccttgctctttgagaagggtctcttactgaaccctgttaccgtt
tgggctagaagggctggccagcaggtctaggatccatttgtcttcatcct
ctccttaccttagccttcagcactaggataacagaggtaaaaggaggtgt
ggacacacttctatgtgaatgttagaaatccgaactgaaatcttcttgaa
taacttttaccaattgtgccatttccacagctcttagaaaatcgtatctt
aaaatataatgtttaaaagaaacaggaataagtatagatgaactctatca
aagttctctggtacaatctgaaatttatgaaaaccactttaggatgtcaa
ataaagacactgtatacatgcagaggatgcctcattagtttaggattaga
gttctcgcatcttatttaataaaaaccaaattggaaaatctgaggaactc
attcaaattatgtagaagaacctcaagccaaagaaatgcagggccacgta
gtgaagatgaagagtcgagagttttgcctt
gaattcagcgtgaggtctacatctgtagaaagagctcatgctctggatta
gcttcattacacagctggacttgcatagacatggcaggagaacagcgagg
actctctcaggaatgggcacagaaagatgtagtgcgctgagatgaattct
cctttaaataaaaacgaagtcagattttagaatgaaattctctagtgctg
tcaaactgtttgaaactggatttggcagttgtcctttcaaactgttattt
cagagcacgtgtcccagaagggacagctaagaatgcttgtcatatttgaa
ctctttccagaaccattcagcaggatactggcagtccacttgttcgtgtt
aattatttctgccctgattgcctggcaacacataacatgggaagtattat
attttgctatttgagaatgcttccagcagaatgcagggagaaaatggaat
acaaagtcggctggaaatgtaacttaataagttaggtgtgtattttgatt
gaaaatttgttacagatgaagtggtttgtaatcccatgattgtgttaacc
acagtttcagagagcttgagggtgtctcagtggatattggtagaatgaaa
ctaatgatagatcttaatggccagcacaccacaatcgatgaacatgaatg
gtctcccttgtaggcagaatggatgcatatgtgtgtgtgaccatgtgtta
cacataggtatgatgggcagctgctcatgcaatgggatttgtttacctgt
gcctctctggtggggttgggaagaagagagctttgaatgacagactttat
agcactctataatggtttttttgtgtgtgtgtgtgtgtgataatgtttta
ttaccttgaagtcacataggcaccaccagtcccaacaacctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117908390_117909530
seq2: B6Ng01-107N02.b_44_1173

seq1  GAATTCAGGTTCTGGCACCTGCATCAGACAGCTTACAACCACCAGTAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTCTGGCACCTGCATCAGACAGCTTACAACCACCAGTAACC  50

seq1  CCAGTTATACACAGATACATATAAGTACATATAACAAAATGTAAAATAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTATACACAGATACATATAAGTACATATAACAAAATGTAAAATAAG  100

seq1  TATTTAATTGGAAAGACAGGACAGATAGTATCACGGAACATATAAGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATTGGAAAGACAGGACAGATAGTATCACGGAACATATAAGTCCT  150

seq1  TTAATAATGAAGAAGTAGCCAGATAATCAAGAAAACAAGACAATTTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATGAAGAAGTAGCCAGATAATCAAGAAAACAAGACAATTTCTGC  200

seq1  ATGTTCATACATGTAATATCATCACCTCGACAATTGAAGTAAAAGCTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATACATGTAATATCATCACCTCGACAATTGAAGTAAAAGCTGAT  250

seq1  TCAATAAGAGAAGAAATGGGTAAGTGTCCAGTTAATGTCACCTTTTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAGAGAAGAAATGGGTAAGTGTCCAGTTAATGTCACCTTTTATTA  300

seq1  CTCTCAATATCTGATAGAATGTATAGAGAGACAATGAGTAAAAATATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAATATCTGATAGAATGTATAGAGAGACAATGAGTAAAAATATAAC  350

seq1  AAAACCTAATTCATTTTTATGATGCATTCTATTCAATCACCCAAACATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTAATTCATTTTTATGATGCATTCTATTCAATCACCCAAACATCA  400

seq1  AAATATTATTGTGATGAATATGAAGGGAAATCTACAAATAAATGATTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTATTGTGATGAATATGAAGGGAAATCTACAAATAAATGATTTGA  450

seq1  GAGTTTAATAAATTGTCAGAATAAATGGTCAACATATAGAATTATGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAATAAATTGTCAGAATAAATGGTCAACATATAGAATTATGTTTA  500

seq1  AGAGGCCAATATAATTTGCAGATTAGTTTGTGTGTAGTATATGTGTATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCAATATAATTTGCAGATTAGTTTGTGTGTAGTATATGTGTATGT  550

seq1  GCATGGGTGAGGTAGAGGTTGCCGTAGACATCAGGTATTTTTTCAGTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGTGAGGTAGAGGTTGCCGTAGACATCAGGTATTTTTTCAGTTGT  600

seq1  TTTTCACCTTGCTCTTTGAGAAGGGTCTCTTACTGAACCCTGTTACCGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACCTTGCTCTTTGAGAAGGGTCTCTTACTGAACCCTGTTACCGTT  650

seq1  TGGGCTAGAAGGGCTGGCCAGCAGGTCTAGGATCCATTTGTCTTCATCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTAGAAGGGCTGGCCAGCAGGTCTAGGATCCATTTGTCTTCATCCT  700

seq1  CTCCTTACCTTAGCCTTCAGCACTAGGATAACAGAGGTAAAAGGAGGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTACCTTAGCCTTCAGCACTAGGATAACAGAGGTAAAAGGAGGTGT  750

seq1  GGACACACTTCTATGTGAATGTTAGAAATCCGAACTGAAATCTTCTTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACACTTCTATGTGAATGTTAGAAATCCGAACTGAAATCTTCTTGAA  800

seq1  TAACTTTTACCAATTGTGCCATTTCCACAGCTCTTAGAAAATCGTATCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTACCAATTGTGCCATTTCCACAGCTCTTAGAAAATCGTATCTT  850

seq1  AAAATATAATGTTTAAAAGAAACAGGAATAAGTATAGATGAACTCTATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAATGTTTAAAAGAAACAGGAATAAGTATAGATGAACTCTATCA  900

seq1  AAGTTCTCTGGTACAATCTGAAATTTATGAAAACCACTTTAGGATGTCAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGTTCTCTGGTACAATCTGAAATTTATGAAAACCACTTTAGGATGTC-A  949

seq1  AATAAAGACACTGTATACATGCAGAGGATGCCTCAATAGTTTAAGATTAG  1000
      ||||||||||||||||||||||||||||||||||| ||||||| ||||||
seq2  AATAAAGACACTGTATACATGCAGAGGATGCCTCATTAGTTTAGGATTAG  999

seq1  AAGTTCTCGCATCTATTTAAATAAAAAACAAAATGGAAAATTCTGAGGAA  1050
       |||||||||||||  || |||||||| |||| ||||||| ||||||| |
seq2  -AGTTCTCGCATCTTATTTAATAAAAACCAAATTGGAAAA-TCTGAGG-A  1046

seq1  ACTCATTCAAAATTTATGTAGAAGAA-CTCAAGGCAAAAGATAATGCAAG  1099
      |||||||||||  ||||||||||||| ||||| || ||||| |||||| |
seq2  ACTCATTCAAA--TTATGTAGAAGAACCTCAA-GCCAAAGA-AATGCAGG  1092

seq1  GGCACGTAGTGAAGATGAAGAGGACAGAAGAGGTTTTGCCTT  1141
      | ||||||||||||||||||||   |||    ||||||||||
seq2  GCCACGTAGTGAAGATGAAGAGTCGAGA----GTTTTGCCTT  1130

seq1: chr3_118027636_118028527
seq2: B6Ng01-107N02.g_64_955 (reverse)

seq1  GAGGTTGTTGGGACTGGTGGTGCCTATGTGACTTCAAGGTAATAAAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGTTGGGACTGGTGGTGCCTATGTGACTTCAAGGTAATAAAACAT  50

seq1  TATCACACACACACACACACAAAAAAACCATTATAGAGTGCTATAAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACACACACACACACACAAAAAAACCATTATAGAGTGCTATAAAGTC  100

seq1  TGTCATTCAAAGCTCTCTTCTTCCCAACCCCACCAGAGAGGCACAGGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTCAAAGCTCTCTTCTTCCCAACCCCACCAGAGAGGCACAGGTAA  150

seq1  ACAAATCCCATTGCATGAGCAGCTGCCCATCATACCTATGTGTAACACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCCCATTGCATGAGCAGCTGCCCATCATACCTATGTGTAACACAT  200

seq1  GGTCACACACACATATGCATCCATTCTGCCTACAAGGGAGACCATTCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACACACACATATGCATCCATTCTGCCTACAAGGGAGACCATTCATG  250

seq1  TTCATCGATTGTGGTGTGCTGGCCATTAAGATCTATCATTAGTTTCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCGATTGTGGTGTGCTGGCCATTAAGATCTATCATTAGTTTCATTC  300

seq1  TACCAATATCCACTGAGACACCCTCAAGCTCTCTGAAACTGTGGTTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATATCCACTGAGACACCCTCAAGCTCTCTGAAACTGTGGTTAACA  350

seq1  CAATCATGGGATTACAAACCACTTCATCTGTAACAAATTTTCAATCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATGGGATTACAAACCACTTCATCTGTAACAAATTTTCAATCAAAA  400

seq1  TACACACCTAACTTATTAAGTTACATTTCCAGCCGACTTTGTATTCCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACCTAACTTATTAAGTTACATTTCCAGCCGACTTTGTATTCCATT  450

seq1  TTCTCCCTGCATTCTGCTGGAAGCATTCTCAAATAGCAAAATATAATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCTGCATTCTGCTGGAAGCATTCTCAAATAGCAAAATATAATACT  500

seq1  TCCCATGTTATGTGTTGCCAGGCAATCAGGGCAGAAATAATTAACACGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGTTATGTGTTGCCAGGCAATCAGGGCAGAAATAATTAACACGAA  550

seq1  CAAGTGGACTGCCAGTATCCTGCTGAATGGTTCTGGAAAGAGTTCAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGACTGCCAGTATCCTGCTGAATGGTTCTGGAAAGAGTTCAAATA  600

seq1  TGACAAGCATTCTTAGCTGTCCCTTCTGGGACACGTGCTCTGAAATAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGCATTCTTAGCTGTCCCTTCTGGGACACGTGCTCTGAAATAACA  650

seq1  GTTTGAAAGGACAACTGCCAAATCCAGTTTCAAACAGTTTGACAGCACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAAGGACAACTGCCAAATCCAGTTTCAAACAGTTTGACAGCACTA  700

seq1  GAGAATTTCATTCTAAAATCTGACTTCGTTTTTATTTAAAGGAGAATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTTCATTCTAAAATCTGACTTCGTTTTTATTTAAAGGAGAATTCA  750

seq1  TCTCAGCGCACTACATCTTTCTGTGCCCATTCCTGAGAGAGTCCTCGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCGCACTACATCTTTCTGTGCCCATTCCTGAGAGAGTCCTCGCTG  800

seq1  TTCTCCTGCCATGTCTATGCAAGTCCAGCTGTGTAATGAAGCTAATCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTGCCATGTCTATGCAAGTCCAGCTGTGTAATGAAGCTAATCCAG  850

seq1  AGCATGAGCTCTTTCTACAGATGTAGACCTCACGCTGAATTC  892
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGAGCTCTTTCTACAGATGTAGACCTCACGCTGAATTC  892