BAC Information

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BAC

Clone NameB6Ng01-108A04
Chromosome3 (Build37)
Map Location 76,857,703 - 76,858,855
singlet/doubletsinglet
Overlap genenone
Upstream geneFstl5, LOC100041625, LOC100041635
Downstream geneDnmt3a-ps1, EG626461
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108A04.g
ACCDH915310
length1,130
definitionDH915310|Mus musculus domesticus DNA, BAC clone: B6Ng01-108A04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttcaagaaaatcagaaaatcacaacaaaaaaaattgggagaaa
atgaataaatccctcaaagaaagccagaaaaacacaattagaagaaacga
atatattccttaaagaaagtcaactttttcatcatgaattttgcaaagtc
atttatctactctagaactcatttcaatattaaataggagaaacacaaac
tagaaaacttctcaacatatgcccatccaactgtaagtgaaacaaaaaat
taaaaagtcctataaaccttttgtataccaaatattatctctaactcgat
ctctttctatcattatttattttactttttaaaaaatattttattaggta
ttttcctcatttatttttccaatgctatcccaaaattcccccataccctc
cccccccccccactaccctacccacccactcccactttttggccctggca
ttcccctgtactggtgcatataaagtttgcaagtacaatgggcctctcca
gtgatggctgactaggccatcttttgatacatatcagctagagacacgag
ctcaggggtactgattagttcataattttccacctataaggttgcagatc
cctttagctccttgggtactttctctagctcctccattggggtccctgtg
atccatccaatagctgactgtgaacatccacttctgtgtttgctaggccc
tggcataatctcacaagagagagctctatctgggtcctttcagcaaaatc
tttgctagtgtgagcaatggtgtcagtgtttagaagctgattatgggatg
gattcctggatatggcagtctctagatggtccatccttttatcccagctc
caaactttgtctctgtaactccttcatgggtgttttgttccaattctaag
aaggggcacagtggtccacactttggtcttcatttttcttgagtttcatg
tgtaatgatgtatatagagtcactgcttctttacagggaactttggatac
tgtgagatagaagaaatgctaatagttctctgcacaaacctagatgtagc
tgtcttgattaaaggactaatggtcagattcatgctttcttttccttttc
ttttcattacttttttttctttgagacagg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_76857703_76858855
seq2: B6Ng01-108A04.g_67_1196

seq1  GAATTCCTTCAAGAAAATCAGAAAATCACAACAAAAAAAATTGGGAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCAAGAAAATCAGAAAATCACAACAAAAAAAATTGGGAGAAA  50

seq1  ATGAATAAATCCCTCAAAGAAAGCCAGAAAAACACAATTAGAAGAAACGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAAATCCCTCAAAGAAAGCCAGAAAAACACAATTAGAAGAAACGA  100

seq1  ATATATTCCTTAAAGAAAGTCAACTTTTTCATCATGAATTTTGCAAAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTCCTTAAAGAAAGTCAACTTTTTCATCATGAATTTTGCAAAGTC  150

seq1  ATTTATCTACTCTAGAACTCATTTCAATATTAAATAGGAGAAACACAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCTACTCTAGAACTCATTTCAATATTAAATAGGAGAAACACAAAC  200

seq1  TAGAAAACTTCTCAACATATGCCCATCCAACTGTAAGTGAAACAAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAACTTCTCAACATATGCCCATCCAACTGTAAGTGAAACAAAAAAT  250

seq1  TAAAAAGTCCTATAAACCTTTTGTATACCAAATATTATCTCTAACTCGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTCCTATAAACCTTTTGTATACCAAATATTATCTCTAACTCGAT  300

seq1  CTCTTTCTATCATTATTTATTTTACTTTTTAAAAAATATTTTATTAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTATCATTATTTATTTTACTTTTTAAAAAATATTTTATTAGGTA  350

seq1  TTTTCCTCATTTATTTTTCCAATGCTATCCCAAAATTCCCCCATACCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCATTTATTTTTCCAATGCTATCCCAAAATTCCCCCATACCCTC  400

seq1  CCCCCCCCCCCACTACCCTACCCACCCACTCCCACTTTTTGGCCCTGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCACTACCCTACCCACCCACTCCCACTTTTTGGCCCTGGCA  450

seq1  TTCCCCTGTACTGGTGCATATAAAGTTTGCAAGTACAATGGGCCTCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTGTACTGGTGCATATAAAGTTTGCAAGTACAATGGGCCTCTCCA  500

seq1  GTGATGGCTGACTAGGCCATCTTTTGATACATATCAGCTAGAGACACGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGCTGACTAGGCCATCTTTTGATACATATCAGCTAGAGACACGAG  550

seq1  CTCAGGGGTACTGATTAGTTCATAATTTTCCACCTATAAGGTTGCAGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGGTACTGATTAGTTCATAATTTTCCACCTATAAGGTTGCAGATC  600

seq1  CCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGTCCCTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGTCCCTGTG  650

seq1  ATCCATCCAATAGCTGACTGTGAACATCCACTTCTGTGTTTGCTAGGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCCAATAGCTGACTGTGAACATCCACTTCTGTGTTTGCTAGGCCC  700

seq1  TGGCATAATCTCACAAGAGAGAGCTCTATCTGGGTCCTTTCAGCAAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATAATCTCACAAGAGAGAGCTCTATCTGGGTCCTTTCAGCAAAATC  750

seq1  -TTGCTAGTGTGAGCAATGGTGTCAGTGTTTAGAAGCTGATTATGGGATG  799
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAGTGTGAGCAATGGTGTCAGTGTTTAGAAGCTGATTATGGGATG  800

seq1  GATTCCTGGATATGGCAGTCTCTAGATGGTCCATCCTTTCATCCCAGCTC  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GATTCCTGGATATGGCAGTCTCTAGATGGTCCATCCTTTTATCCCAGCTC  850

seq1  CAAACTTTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAATTCTA  899
      |||||||||||||||||||||||| ||||||||||||||| |||||||||
seq2  CAAACTTTGTCTCTGTAACTCCTT-CATGGGTGTTTTGTT-CCAATTCTA  898

seq1  AGAAGGGGCACAGT-GTCCACACTTTGGTCTTCATTTTTCTTGAGTTTCA  948
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGAAGGGGCACAGTGGTCCACACTTTGGTCTTCATTTTTCTTGAGTTTCA  948

seq1  TGTGTAATGATGTATATAGAGTCACTGCTCCTTTACAGGGAACTTTGGAA  998
      ||||||||||||||||||||||||||||| |||||||||||||||||| |
seq2  TGTGTAATGATGTATATAGAGTCACTGCTTCTTTACAGGGAACTTTGG-A  997

seq1  TACCTGTGAGATAGAGATATTGCTAATAGTTTCTCTGCACAAACCTAAGA  1048
      || ||||||||||||   | ||||||||| |||||||||||||||| |||
seq2  TA-CTGTGAGATAGAAGAAATGCTAATAG-TTCTCTGCACAAACCT-AGA  1044

seq1  TTGTAAGCTGTCTTGATACACAGGACTAATGGTCAAAGGTATTCATGCTT  1098
       ||| ||||||||||||  | ||||||||||||||     |||||||| |
seq2  -TGT-AGCTGTCTTGAT-TAAAGGACTAATGGTCA----GATTCATGC-T  1086

seq1  TTCTTTTTTCACTTTTTCTTTTCTATTTACTTTTTTTTTTTCTTTTTGAG  1148
      |||||||    | ||||||||||   |||||||||||     | ||||||
seq2  TTCTTTT----CCTTTTCTTTTC--ATTACTTTTTTT-----TCTTTGAG  1125

seq1  ACAGG  1153
      |||||
seq2  ACAGG  1130