BAC Information

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BAC

Clone NameB6Ng01-109A11
Chromosome3 (Build37)
Map Location 27,044,757 - 27,182,684
singlet/doubletdoublet
Overlap geneEct2, Aadacl1, LOC100040527
Upstream geneNlgn1, LOC229152, Spata16, LOC665258
Downstream geneTnfsf10, Ghsr, Fndc3b, E030011K20Rik, Pld1, Tnik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109A11.bB6Ng01-109A11.g
ACCDH916054DH916055
length1,1861,086
definitionDH916054|Mus musculus domesticus DNA, BAC clone: B6Ng01-109A11, 5' end.DH916055|Mus musculus domesticus DNA, BAC clone: B6Ng01-109A11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,044,757 - 27,045,950)(27,181,590 - 27,182,684)
sequence
gaattcatgggccaactatcacttacaaacatgagtttttaaatgacgtc
acaacaccaaacagaaatgatggctggatgcaatctaaccctgcgttact
aggtcagggtctcatacttacaagctcctccttcttcctgaatccagtga
agcagagcaccaggttcagcatactcgtacaatacagcggccggcaggaa
aacggcaagggctggaggacacaattccaaactcatgagcctccttctcc
gttagcattgagaaagcatttcctcatgcttaaagatttcactctttacc
cgttaacttttctgtcttttgttttggtttgtttgtttgtttgttttttc
aagacaggatttctctgtgtagccctggctgttctggagctcactctgta
gaccaggcctgcctctgcctcccaagtgctgggattaaaggcatgtgcca
ccacacctggcaccagttaacttttcaatacccaaggttcacacactcac
atacaccttcatactcattcaaatacacatcaaaaagaaataaaaagcgc
tgggcgtggtagcgctcacctttaatcccagcactcacagacagaggcag
gtgaatctctgagttcaaggccagcctggtctacagagtgagttacagga
cagccagggccatacagagaaaccctgtttccaaaaaaacaaaaacaaaa
acaaaaacaaaaaaagaagaagaagaagaaaaggaaaaagaaaaaaccta
aaataatttttctaatttaaatcgtatgataatggatataatactagttt
tagtggaaaagagaatggcttatgtgtgcaccttcttggaagccaggact
catggcatgagccaccatacccagcaacaacaaattatttcttatcctaa
gtgctacgtgtactcgacaatttaacagcattttctaattataaattttc
aagaatgcattaataaaaatgtattcttgagatgacaaacgtacgtttct
tacctcttccctttgtgcacagtgagtattactggtggcccaacatccta
caatcagcttgtataggccatggaagacagaatctggaagcagtaaccta
caaaaattattctcaattctggggatctcaactttcaattcttctattgg
agttatcttacacaggccactttattcctgaatttt
gaattcacacgtctctacagccctcctcccacgtattttgagaaaggtat
ttaaaagctgaagatctagaggaactgtctgggacgggtaaagctgccct
tagaaaactgagtgccaagaagcgggcctcccgctctctcttggggagct
ggcagggtcacgcgctgtcggcgggatgaacacgtgtgttctcgtggtca
ccaggcagaacaaactttgctctgggtcaacgaaacctttccgcattctc
ccagcctggctggtgggaacgcttctgaattaagatgggggagtgtttat
caccagtgctttgcatttccactggggtcaccttttgtgctgctgggaga
taagagaactgaaccgttgagctgataagaggcgcaggctgttgcgtttc
tccagatcgtctctggatctgagagaaatctcggagaaatgtaaacaaaa
ccgcaggtgcatttgaatgtgaaacacattctccaacagaagcctcgctt
gagtgagctgtcccttgctggaaacaatgggctgctaatccggtgactcg
aggcagcccgcttgaagtgtgtgtgatcctggaggccattacagctgaaa
tggaaatgctaactaactgcccaccttccctataatttctcgggaagccg
cagccggctgcgatgataagagctgcttccagccattcgccttccctcca
cagaaaccttgacaagccttatgcaaaacacattttattttaaatctaat
ctcaggtattctgccattggagtctctctgtctctctgagaaattaaaac
ccggagattctaaggatttacccaaggggcagtgctgagatcgaagaact
gacacggtcagactgagaaaatgcagctgtcttcacaatgcactctggga
aatttggatctggacttcagagtaccttagtgatttattcccctgacaaa
aatccagatgaaattaatcttccttttaccacaaaagggtggtcattttt
cttcctctgggaaatgttaagtagggacattcctggatataagaatggca
gccccatttcacttaaggttccccattgtgaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_27044757_27045950
seq2: B6Ng01-109A11.b_51_1236

seq1  GAATTCATGGGCCAACTATCACTTACAAACATGAGTTTTTAAATGACGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGGCCAACTATCACTTACAAACATGAGTTTTTAAATGACGTC  50

seq1  ACAACACCAAACAGAAATGATGGCTGGATGCAATCTAACCCTGCGTTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACCAAACAGAAATGATGGCTGGATGCAATCTAACCCTGCGTTACT  100

seq1  AGGTCAGGGTCTCATACTTACAAGCTCCTCCTTCTTCCTGAATCCAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGGGTCTCATACTTACAAGCTCCTCCTTCTTCCTGAATCCAGTGA  150

seq1  AGCAGAGCACCAGGTTCAGCATACTCGTACAATACAGCGGCCGGCAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGCACCAGGTTCAGCATACTCGTACAATACAGCGGCCGGCAGGAA  200

seq1  AACGGCAAGGGCTGGAGGACACAATTCCAAACTCATGAGCCTCCTTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGCAAGGGCTGGAGGACACAATTCCAAACTCATGAGCCTCCTTCTCC  250

seq1  GTTAGCATTGAGAAAGCATTTCCTCATGCTTAAAGATTTCACTCTTTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCATTGAGAAAGCATTTCCTCATGCTTAAAGATTTCACTCTTTACC  300

seq1  CGTTAACTTTTCTGTCTTTTGTTTTGGTTTGTTTGTTTGTTTGTTTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAACTTTTCTGTCTTTTGTTTTGGTTTGTTTGTTTGTTTGTTTTTTC  350

seq1  AAGACAGGATTTCTCTGTGTAGCCCTGGCTGTTCTGGAGCTCACTCTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGATTTCTCTGTGTAGCCCTGGCTGTTCTGGAGCTCACTCTGTA  400

seq1  GACCAGGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCA  450

seq1  CCACACCTGGCACCAGTTAACTTTTCAATACCCAAGGTTCACACACTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCTGGCACCAGTTAACTTTTCAATACCCAAGGTTCACACACTCAC  500

seq1  ATACACCTTCATACTCATTCAAATACACATCAAAAAGAAATAAAAAGCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCTTCATACTCATTCAAATACACATCAAAAAGAAATAAAAAGCGC  550

seq1  TGGGCGTGGTAGCGCTCACCTTTAATCCCAGCACTCACAGACAGAGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGTGGTAGCGCTCACCTTTAATCCCAGCACTCACAGACAGAGGCAG  600

seq1  GTGAATCTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTACAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATCTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTACAGGA  650

seq1  CAGCCAGGGCCATACAGAGAAACCCTG-TTCCAAAAAAACAAAAACAAAA  699
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGCCAGGGCCATACAGAGAAACCCTGTTTCCAAAAAAACAAAAACAAAA  700

seq1  ACAAAAACAAAAAAAGAAGAAGAAGAAGAAAAGGAAAAAGAAAAAACCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACAAAAAAAGAAGAAGAAGAAGAAAAGGAAAAAGAAAAAACCTA  750

seq1  AAATAATTTTTCTAATTTAAATCGTATGATAATGGATATAATACTAGTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTTTCTAATTTAAATCGTATGATAATGGATATAATACTAGTTT  800

seq1  TAAGTGGAAAAGAGAATGGCTTATGTGTGCACCTTCTTGGAAGCCAGGAC  849
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AGTGGAAAAGAGAATGGCTTATGTGTGCACCTTCTTGGAAGCCAGGAC  849

seq1  TCATGGCATGAGCCACCATACCCAGCAACAACAAATTA-TTCTTATCCTA  898
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCATGGCATGAGCCACCATACCCAGCAACAACAAATTATTTCTTATCCTA  899

seq1  AGTGCTACGTGTACTCGACAA-TTAACAGCATTTTCTAATTATAAATTTT  947
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGTGCTACGTGTACTCGACAATTTAACAGCATTTTCTAATTATAAATTTT  949

seq1  CAAAGAATGCATTAATAAAAATGTATTCTTGAGATGACAAACGTACGTTT  997
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-AAGAATGCATTAATAAAAATGTATTCTTGAGATGACAAACGTACGTTT  998

seq1  CTTACCTCTCCCCTTTGTGCACAGTTGAGTATAACTGGTGGCCCAACAAT  1047
      ||||||||| |||||||||||||| ||||||| |||||||||||||| ||
seq2  CTTACCTCTTCCCTTTGTGCACAG-TGAGTATTACTGGTGGCCCAAC-AT  1046

seq1  CCTACAATCAGCCTTGTATAAGTCATTGAAGACAGAATTCTGGAAGTCAG  1097
      ||||||||||| |||||||| | ||| |||||||||| |||||||| |||
seq2  CCTACAATCAG-CTTGTATAGGCCATGGAAGACAGAA-TCTGGAAG-CAG  1093

seq1  TAA-CTACAAATA-TATTCTCAAATTCTGGGGAATCCAAACTTTCAAATT  1145
      ||| ||||||| | ||||||| |||||||||| |||  ||||||| ||||
seq2  TAACCTACAAAAATTATTCTC-AATTCTGGGG-ATCTCAACTTTC-AATT  1140

seq1  CTTCCATT-GAGTCCATCTTTACACAGGGCACTTTCATTTCCTGGATTTT  1194
      |||| ||| ||||  ||| ||||||||| ||||||   |||||| |||||
seq2  CTTCTATTGGAGT-TATC-TTACACAGGCCACTTT--ATTCCTGAATTTT  1186

seq1: chr3_27181590_27182684
seq2: B6Ng01-109A11.g_69_1154 (reverse)

seq1  TTTTTTCTACACTGGGGAAACTTTTAAGTGAAATGGGGGCTTGCCATTCT  50
      ||||||| ||| ||||||| |  |||||||||||||||   |||||||||
seq2  TTTTTTC-ACAATGGGGAACC--TTAAGTGAAATGGGG--CTGCCATTCT  45

seq1  TAT-TCCAAGAATGTCCCCTACTTTAACATTCTCCAGA-GTAGAAAAATG  98
      ||| |||| |||||| |||||| ||||||||  ||||| | |||||||||
seq2  TATATCCAGGAATGT-CCCTAC-TTAACATTTCCCAGAGGAAGAAAAATG  93

seq1  ACCACAC-TCTGT-GTAAAAGGAAGATTAATTTTCATCTGGATTTTTGTC  146
      ||||| | | ||| |||||||||||||||| |||||||||||||||||||
seq2  ACCACCCTTTTGTGGTAAAAGGAAGATTAA-TTTCATCTGGATTTTTGTC  142

seq1  AGGGGGAATAAATCACCTAAGGTACTCTGAAGTCCAGATCCAAATTTCCC  196
      | ||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  A-GGGGAATAAATCA-CTAAGGTACTCTGAAGTCCAGATCCAAATTTCCC  190

seq1  AGAGTGCATTGTGAAGACAGCCTGCATTTTTCTCAGTCTGACCGTGTCAG  246
      |||||||||||||||||||| ||||| |||||||||||||||||||||||
seq2  AGAGTGCATTGTGAAGACAG-CTGCA-TTTTCTCAGTCTGACCGTGTCAG  238

seq1  TTCTTCGATCTCAGCACTGCCCCTTGGGTAAATTCCTTAGAATCTCCGGG  296
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTCTTCGATCTCAGCACTGCCCCTTGGGTAAA-TCCTTAGAATCTCCGGG  287

seq1  TTTTAATTTCTCAGAGAGACAGAGAGACTCCAATGGCAGAATACCTGAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTCTCAGAGAGACAGAGAGACTCCAATGGCAGAATACCTGAGA  337

seq1  TTAGATTTAAAATAAAATGTGTTTTGCATAAGGCTTGTCAAGGTTTCTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTAAAATAAAATGTGTTTTGCATAAGGCTTGTCAAGGTTTCTGT  387

seq1  GGAGGGAAGGCGAATGGCTGGAAGCAGCTCTTATCATCGCAGCCGGCTGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAAGGCGAATGGCTGGAAGCAGCTCTTATCATCGCAGCCGGCTGC  437

seq1  GGCTTCCCGAGAAATTATAGGGAAGGTGGGCAGTTAGTTAGCATTTCCAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCCGAGAAATTATAGGGAAGGTGGGCAGTTAGTTAGCATTTCCAT  487

seq1  TTCAGCTGTAATGGCCTCCAGGATCACACACACTTCAAGCGGGCTGCCTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTGTAATGGCCTCCAGGATCACACACACTTCAAGCGGGCTGCCTC  537

seq1  GAGTCACCGGATTAGCAGCCCATTGTTTCCAGCAAGGGACAGCTCACTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACCGGATTAGCAGCCCATTGTTTCCAGCAAGGGACAGCTCACTCA  587

seq1  AGCGAGGCTTCTGTTGGAGAATGTGTTTCACATTCAAATGCACCTGCGGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGGCTTCTGTTGGAGAATGTGTTTCACATTCAAATGCACCTGCGGT  637

seq1  TTTGTTTACATTTCTCCGAGATTTCTCTCAGATCCAGAGACGATCTGGAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTACATTTCTCCGAGATTTCTCTCAGATCCAGAGACGATCTGGAG  687

seq1  AAACGCAACAGCCTGCGCCTCTTATCAGCTCAACGGTTCAGTTCTCTTAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCAACAGCCTGCGCCTCTTATCAGCTCAACGGTTCAGTTCTCTTAT  737

seq1  CTCCCAGCAGCACAAAAGGTGACCCCAGTGGAAATGCAAAGCACTGGTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGCAGCACAAAAGGTGACCCCAGTGGAAATGCAAAGCACTGGTGA  787

seq1  TAAACACTCCCCCATCTTAATTCAGAAGCGTTCCCACCAGCCAGGCTGGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACTCCCCCATCTTAATTCAGAAGCGTTCCCACCAGCCAGGCTGGG  837

seq1  AGAATGCGGAAAGGTTTCGTTGACCCAGAGCAAAGTTTGTTCTGCCTGGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCGGAAAGGTTTCGTTGACCCAGAGCAAAGTTTGTTCTGCCTGGT  887

seq1  GACCACGAGAACACACGTGTTCATCCCGCCGACAGCGCGTGACCCTGCCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACGAGAACACACGTGTTCATCCCGCCGACAGCGCGTGACCCTGCCA  937

seq1  GCTCCCCAAGAGAGAGCGGGAGGCCCGCTTCTTGGCACTCAGTTTTCTAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCAAGAGAGAGCGGGAGGCCCGCTTCTTGGCACTCAGTTTTCTAA  987

seq1  GGGCAGCTTTACCCGTCCCAGACAGTTCCTCTAGATCTTCAGCTTTTAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCTTTACCCGTCCCAGACAGTTCCTCTAGATCTTCAGCTTTTAAA  1037

seq1  TACCTTTCTCAAAATACGTGGGAGGAGGGCTGTAGAGACGTGTGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTCTCAAAATACGTGGGAGGAGGGCTGTAGAGACGTGTGAATTC  1086