BAC Information

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BAC

Clone NameB6Ng01-109E15
Chromosome3 (Build37)
Map Location 129,256,575 - 129,406,498
singlet/doubletdoublet
Overlap geneElovl6, LOC100043758, Egf
Upstream geneLOC100043393, EG668831, Pitx2, Enpep, LOC100043415, LOC435755, LOC668840
Downstream geneGm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1, Agxt2l1, 2310008M10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109E15.bB6Ng01-109E15.g
ACCDH916234DH916235
length1,1161,008
definitionDH916234|Mus musculus domesticus DNA, BAC clone: B6Ng01-109E15, 5' end.DH916235|Mus musculus domesticus DNA, BAC clone: B6Ng01-109E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,405,366 - 129,406,498)(129,256,575 - 129,257,585)
sequence
gaattctctgtttatctctgtaccacatttttaaattgggttatttggtt
tgttgatgtctagtttcctgagttctttgtaaaatttggatattattcct
ctgtcagatgaattgttgttgacgaccttttcccattgtgtgggctgccc
atttgtactgcactgtgccatgccgtgcaccccagtctttcctacactgc
ctccctgtatcaatagtaacgtgaacatgtgaacgaacagtagctttcaa
ctgtgatgcagtgggaccctgtgtagcacagctgagccaagagcgccttg
agggatccaccgcctcttctccaggagcagtgagcttgggtttctatacg
gctgtttatacacagccgctttaaaagcacggtcaactcagggtacaata
aacatggaagcatggctaactcagggtactataaaccggaagcacagtta
actcagggtactataaacatggaagcatggctaactcagggtactataaa
catggaagccagacaaagggaggaggtagcataagaaaggttggggaaag
gtggccaccacaacttcttcttcttttttttttttaagatttatttatta
ttatatgtaagtacactgtagctgtcttcagacacaccagaagaaggcat
cagatctcattagggatggccatgagcaccatgtggtgctgggatttgaa
cgcaggaccttcggaagagcagtcagtgctcttaaccactgagccatctc
tccagccccacaactttttcttttcaaggtctgcaattctgagctgatta
tattcaggaggagtggtgttctttatctagaagagtccccttctttccca
ctttggacccaccaaactctgcccgttttccctccatcttcgtactaaaa
tgaactcataaccaatccatgaccatcaatatccattaaatcaactttcc
tgagatggaaagctaactaatagcctttatctttgtcccacaggtgaaat
gctgatcttagtaagagtgacatcactgagcactctctcagctgaagtac
cgacgatgatgggacagattttccacactaattgctgaatcatggtgtca
gctgaactgggagttc
gaattccatgtagaatttttatttgtatatcaagtggtccactgacaatc
ttatcaagaaaggaacgtatcacgatgtcttagcagttgcttgtactcag
ggacagcattgtctcgtgtcacattttcggcatgggtttaaatgctagtt
tggtgacattggtggtacagtatgtagaaacatcttgggtgcacatttat
cctgtacctgtaatttcccatctgtgtctgaactgacaggaaaacagacg
tgtggcgaggctctgttggtttgagggtttagtccaccaggaaagctagg
ggcgacaggaaactcgccaagtctaactcagaaagactgcaaaatcagtg
aaacttccattatttgaatcgtgattaaatgtagaactcgttattatgga
agtacggatttaaaatatcggaatggcgttgcaccccctttaagactttt
taaaaattatattgcaagctttagttccttgtttcacatttgatacagtt
tcatcgtgtaacccaggctggtctcaatcttgtgtcttcctactttaacc
tcctgatatgcaggggctcctagcctgtgccagcactcctaacgtctccc
gagcatcagggccagccagttaagaaagcttttgttttcttttttatagt
tcaggagttgtttgggcagaatgcagccggcgatggctgacttagactgt
ttaatatattctgagatcagatcaggaattagtctcgtcctcaggtcgaa
ttaagtttcctgttacagtctttcagcgtatgtagactgaatgtcctagg
attggctaacagtgggtgttagttagccgtagtggtacccatcagtgcca
acgctgggagttgtcaggccaggagtcgaggcggatgtgctgcctgctac
tcacactcccagaaaaactggtctgcagccatcacatggccttggcttcc
attatatgcctgctccaggctgttgaaggcccctcttaaatccaccctgt
ctgttgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_129405366_129406498
seq2: B6Ng01-109E15.b_47_1162 (reverse)

seq1  GAACTCACAGTTCATGCCTGACACCATGATTTCAGCCACTAGTGTGGAAG  50
      |||||| |||||||   |||||||||||| |||||| | |||||||||| 
seq2  GAACTCCCAGTTCA--GCTGACACCATGA-TTCAGCAATTAGTGTGGAA-  46

seq1  ATTCTGTCCCATCATCGTCTGGTACTTCAGCCTGAGTGGAGTTGCTCAGT  100
      | ||||||||||||||||| |||||||||| |||||  ||| ||||||||
seq2  AATCTGTCCCATCATCGTC-GGTACTTCAG-CTGAG-AGAG-TGCTCAGT  92

seq1  GATGTCACCTCTTTACTAAGATCAGCATTTTCACCTGTGGGACAAAAGAT  150
      ||||||| ||| ||||||||||||||| ||||||||||||||| ||||||
seq2  GATGTCA-CTC-TTACTAAGATCAGCA-TTTCACCTGTGGGAC-AAAGAT  138

seq1  AAAAGGCTTATTAGTTAAGCCTTTCCATCTCAAGGAAAGTTTGATTTAAT  200
       |||||| |||||||||   ||||||||||| ||||||| ||||||||||
seq2  -AAAGGC-TATTAGTTA--GCTTTCCATCTC-AGGAAAG-TTGATTTAAT  182

seq1  GGATATTGATGGTCATTGATTGGTTATGAGTTCATTTTAGTACGAAGATG  250
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGATATTGATGGTCATGGATTGGTTATGAGTTCATTTTAGTACGAAGATG  232

seq1  GAGGG-AAACGGGCAGAGTTTGGTGGGTCCAAAGTGGGAAAGAAGGGGAC  299
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAAACGGGCAGAGTTTGGTGGGTCCAAAGTGGGAAAGAAGGGGAC  282

seq1  TCTTCTAGATAAAGAACACCACTCCTCCTGAATATAATCAGCTCAGAATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAGATAAAGAACACCACTCCTCCTGAATATAATCAGCTCAGAATT  332

seq1  GCAGACCTTGAAAAGAAAAAGTTGTGGGGCTGGAGAGATGGCTCAGTGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACCTTGAAAAGAAAAAGTTGTGGGGCTGGAGAGATGGCTCAGTGGT  382

seq1  TAAGAGCACTGACTGCTCTTCCGAAGGTCCTGCGTTCAAATCCCAGCACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCACTGACTGCTCTTCCGAAGGTCCTGCGTTCAAATCCCAGCACC  432

seq1  ACATGGTGCTCATGGCCATCCCTAATGAGATCTGATGCCTTCTTCTGGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGCTCATGGCCATCCCTAATGAGATCTGATGCCTTCTTCTGGTG  482

seq1  TGTCTGAAGACAGCTACAGTGTACTTACATATAATAATAAATAAATCTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAAGACAGCTACAGTGTACTTACATATAATAATAAATAAATCTTA  532

seq1  AAAAAAAAAAAGAAGAAGAAGTTGTGGTGGCCACCTTTCCCCAACCTTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGAAGAAGAAGTTGTGGTGGCCACCTTTCCCCAACCTTTC  582

seq1  TTATGCTACCTCCTCCCTTTGTCTGGCTTCCATGTTTATAGTACCCTGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTACCTCCTCCCTTTGTCTGGCTTCCATGTTTATAGTACCCTGAG  632

seq1  TTAGCCATGCTTCCATGTTTATAGTACCCTGAGTTAACTGTGCTTCCGGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCATGCTTCCATGTTTATAGTACCCTGAGTTAACTGTGCTTCCGGT  682

seq1  TTATAGTACCCTGAGTTAGCCATGCTTCCATGTTTATTGTACCCTGAGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTACCCTGAGTTAGCCATGCTTCCATGTTTATTGTACCCTGAGTT  732

seq1  GACCGTGCTTTTAAAGCGGCTGTGTATAAACAGCCGTATAGAAACCCAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGTGCTTTTAAAGCGGCTGTGTATAAACAGCCGTATAGAAACCCAAG  782

seq1  CTCACTGCTCCTGGAGAAGAGGCGGTGGATCCCTCAAGGCGCTCTTGGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGCTCCTGGAGAAGAGGCGGTGGATCCCTCAAGGCGCTCTTGGCT  832

seq1  CAGCTGTGCTACACAGGGTCCCACTGCATCACAGTTGAAAGCTACTGTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTGCTACACAGGGTCCCACTGCATCACAGTTGAAAGCTACTGTTC  882

seq1  GTTCACATGTTCACGTTACTATTGATACAGGGAGGCAGTGTAGGAAAGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACATGTTCACGTTACTATTGATACAGGGAGGCAGTGTAGGAAAGAC  932

seq1  TGGGGTGCACGGCATGGCACAGTGCAGTACAAATGGGCAGCCCACACAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGCACGGCATGGCACAGTGCAGTACAAATGGGCAGCCCACACAAT  982

seq1  GGGAAAAGGTCGTCAACAACAATTCATCTGACAGAGGAATAATATCCAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAGGTCGTCAACAACAATTCATCTGACAGAGGAATAATATCCAAA  1032

seq1  TTTTACAAAGAACTCAGGAAACTAGACATCAACAAACCAAATAACCCAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAAAGAACTCAGGAAACTAGACATCAACAAACCAAATAACCCAAT  1082

seq1  TTAAAAATGTGGTACAGAGATAAACAGAGAATTC  1133
      ||||||||||||||||||||||||||||||||||
seq2  TTAAAAATGTGGTACAGAGATAAACAGAGAATTC  1116

seq1: chr3_129256575_129257585
seq2: B6Ng01-109E15.g_69_1076

seq1  GAATTCCATGTAGAATTTTTATTTGTATATCAAGTGGTCCACTGACAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTAGAATTTTTATTTGTATATCAAGTGGTCCACTGACAATC  50

seq1  TTATCAAGAAAGGAACGTATCACGATGTCTTAGCAGTTGCTTGTACTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAGAAAGGAACGTATCACGATGTCTTAGCAGTTGCTTGTACTCAG  100

seq1  GGACAGCATTGTCTCGTGTCACATTTTCGGCATGGGTTTAAATGCTAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCATTGTCTCGTGTCACATTTTCGGCATGGGTTTAAATGCTAGTT  150

seq1  TGGTGACATTGGTGGTACAGTATGTAGAAACATCTTGGGTGCACATTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACATTGGTGGTACAGTATGTAGAAACATCTTGGGTGCACATTTAT  200

seq1  CCTGTACCTGTAATTTCCCATCTGTGTCTGAACTGACAGGAAAACAGACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACCTGTAATTTCCCATCTGTGTCTGAACTGACAGGAAAACAGACG  250

seq1  TGTGGCGAGGCTCTGTTGGTTTGAGGGTTTAGTCCACCAGGAAAGCTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCGAGGCTCTGTTGGTTTGAGGGTTTAGTCCACCAGGAAAGCTAGG  300

seq1  GGCGACAGGAAACTCGCCAAGTCTAACTCAGAAAGACTGCAAAATCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGACAGGAAACTCGCCAAGTCTAACTCAGAAAGACTGCAAAATCAGTG  350

seq1  AAACTTCCATTATTTGAATCGTGATTAAATGTAGAACTCGTTATTATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCCATTATTTGAATCGTGATTAAATGTAGAACTCGTTATTATGGA  400

seq1  AGTACGGATTTAAAATATCGGAATGGCGTTGCACCCCCTTTAAGACTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACGGATTTAAAATATCGGAATGGCGTTGCACCCCCTTTAAGACTTTT  450

seq1  TAAAAATTATATTGCAAGCTTTAGTTCCTTGTTTCACATTTGATACAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTATATTGCAAGCTTTAGTTCCTTGTTTCACATTTGATACAGTT  500

seq1  TCATCGTGTAACCCAGGCTGGTCTCAATCTTGTGTCTTCCTACTTTAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGTGTAACCCAGGCTGGTCTCAATCTTGTGTCTTCCTACTTTAACC  550

seq1  TCCTGATATGCAGGGGCTCCTAGCCTGTGCCAGCACTCCTAACGTCTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATATGCAGGGGCTCCTAGCCTGTGCCAGCACTCCTAACGTCTCCC  600

seq1  GAGCATCAGGGCCAGCCAGTTAAGAAAGCTTTTGTTTTCTTTTTTATAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCAGGGCCAGCCAGTTAAGAAAGCTTTTGTTTTCTTTTTTATAGT  650

seq1  TCAGGAGTTGTTTGGGCAGAATGCAGCCGGCGATGGCTGACTTAGACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGTTGTTTGGGCAGAATGCAGCCGGCGATGGCTGACTTAGACTGT  700

seq1  TTAATATATTCTGAGATCAGATCAGGAATTAGTCTCGTCCTCAGGTCGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATATTCTGAGATCAGATCAGGAATTAGTCTCGTCCTCAGGTCGAA  750

seq1  TTAAGTTTCCTGTTACAGTCTTTCAGCGTATGTAGACTGAATGTCCTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTCCTGTTACAGTCTTTCAGCGTATGTAGACTGAATGTCCTAGG  800

seq1  ATTGGCTAACAGTGGGTGTTAGTTAGCCGTAGGTGGTACCCATCAGTGCC  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATTGGCTAACAGTGGGTGTTAGTTAGCCGTA-GTGGTACCCATCAGTGCC  849

seq1  AACGCTGGGAGTTGTCAGGGCCAGGAGTCGAGGCGGATGTTGCTGCCCTG  900
      ||||||||||||||||| ||||||||||||||||||||| ||||| ||||
seq2  AACGCTGGGAGTTGTCA-GGCCAGGAGTCGAGGCGGATG-TGCTG-CCTG  896

seq1  CTACTCACACTCCCAG-AAAACTGGTCTGCAGCCATCACATGGCCTT-GC  948
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  CTACTCACACTCCCAGAAAAACTGGTCTGCAGCCATCACATGGCCTTGGC  946

seq1  TTCCATTTAATGCCTGTCTCAGGCTTGTTG-AGGCCTCTCTTAAGTCCCA  997
      |||||||  |||||||   ||||| ||||| ||||| ||||||| | |||
seq2  TTCCATTATATGCCTGCTCCAGGC-TGTTGAAGGCCCCTCTTAAAT-CCA  994

seq1  CCCTGTCTGTTGTG  1011
      ||||||||||||||
seq2  CCCTGTCTGTTGTG  1008