BAC Information

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BAC

Clone NameB6Ng01-110B20
Chromosome3 (Build37)
Map Location 119,516,704 - 119,700,206
singlet/doubletdoublet
Overlap genenone
Upstream geneDpyd, LOC100043275, LOC100043278, Ptbp2
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110B20.bB6Ng01-110B20.g
ACCDH916829DH916830
length1,1141,109
definitionDH916829|Mus musculus domesticus DNA, BAC clone: B6Ng01-110B20, 5' end.DH916830|Mus musculus domesticus DNA, BAC clone: B6Ng01-110B20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,699,079 - 119,700,206)(119,516,704 - 119,517,842)
sequence
gaattccagggtacagttttgacattgggtttaggatatgagctttttgt
tgattagtgactttgctgcccatttgtttcttaaaaggacttatgcaaag
gggagggggatacttccatagaaatgtcacctggagtggatacaaagttc
aggctcagatgggaagggtcagtgtaatcctctggaaacccagcctgggg
agacagcaacagagtagaaagaagcctgggcacttctgagttatgtgact
gtgctcgttgttttgtatcattattctcctcttagtttccaataaagaat
tgagagccactacaggcaaagaagatcctgtggttcaataatgtggcaat
gtgtcactggtggcaggaatctgcaggacctcaacgccgacccaggtggc
agcttgtgactttgccttggacaaagggaatcactctttgacggatgcct
catgatgatttttagtttctgctattcctcccagacagctactgtaacaa
aagcctgtagggagagctcaagtctcacctatttccgacatccacacacc
ggctctctgttttaattttaaaagaaagaaaaaaaaaacactcagagctt
caatcactctcatgtttaatattttattctaaaatagttctgttttgttt
tgcttcttaaaattaaaactgtggttttttttccatgatgggcaacagaa
aaatcaaaggaggacagagaaacagtggtatggagaaggaacgggcttta
acacacgagctcattctttctccttttgaggtaaagaatgtggtccaggc
tgtcctcttcctgtttctggcatggaacagcagctatagcccaggcgttg
atagaatccatctctgtaagcctattaggaaacacacacacacacacaca
cacacacacacacacacacacacacacacactcatacacagacaaaggag
aaatatttaactaattaatcctatcatgaagacacttgtctgtaggacga
catacaaagctatataagattcttatcgagttttccttcagtctctcaag
agacaaatcaggagcactgtagattcgaacctgtccccaaccccttctgg
ctttttccaactca
gaattccccagttcgtagaaatatccttagttcagatactgttatctctt
tccctacacccttacattagagtaacaataaagacccatgaatttgaaaa
aaaaaaaaaaaaacacgtcctgatcaagagtgtagaatgacaggcttgct
tgcagacttggcatcctagttcttggcatcctccgttctcccgcaaggca
cctgatgagatttacagccttcctagcctgggaggttttcttttaaagtc
taatgaagttgtccatgagcttctgttctgagtccattcttaaattcttt
tcttaatgagactaagaacctcaagacgccagtttccccccccccccccc
atcactagggcctcacgcatactaagtgagtaacatcacacagcatcctt
atccctttcctcttcttcttttgagacagggtctcactagtttcctcacg
gttttcttgaacttgctttgcagcctagacaggtgtttaatttgcaatcc
tcctgcatcaggctctcgaatatctgggtttagaggtctataccactgga
ttggacttattgcgacatcagttacttaggagctagtgatttttttagta
cttatgaatctgacacgatatagaaagaggctgggaaacccgacctcggt
ttcacgttatctaggagaagcctggtacagtagtctcatcagaacaaaat
aatcaaagctagggtaataaagagggaagcaagcatgcaagctgctgtag
aagaattaacatttccccagaaaaatcagctttctgtaacataaaagcat
cccaaagaggggagaatcctttaaatattgtgtgttttttttttttttca
acttcaaagaggatacccaggacatgcaactgttttttaacatgaaaatc
ttcaaagaatatatttcccatgcaatacttaaattctcaaggggctcttc
gggaggcaaaccctttgagtgaaatctcttcatcatgtgagttttttcaa
agagaaaccttttcaattcttagccaggacatttagaaggacttattcag
aatgagaagagaaaccttctttcatgcctggcttattggacttctcaaag
gacatagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_119699079_119700206
seq2: B6Ng01-110B20.b_43_1156 (reverse)

seq1  TGAGTTGGGAAAAAAGCCAGGAGGGG-TGGGGACAGGGTCTGGAATCTAC  49
      ||||||||  |||||||||| ||||| |||||||||| ||  ||||||||
seq2  TGAGTTGG--AAAAAGCCAGAAGGGGTTGGGGACAGGTTC--GAATCTAC  46

seq1  AGGTGGCTCCTGATTTGTCTCTTTTAAGAGACTGGAAGGGAAAACTCGAT  99
      ||   ||||||||||||||||  || ||||||||  | ||||||||||||
seq2  AG--TGCTCCTGATTTGTCTC--TTGAGAGACTG--AAGGAAAACTCGAT  90

seq1  AAGAATCTTATATAGCTTTTGTATGGTCGTCCTTAACAGACAAGTGTC-T  148
      |||||||||||||||| ||||||| ||||||||  ||||||||||||| |
seq2  AAGAATCTTATATAGC-TTTGTAT-GTCGTCCT--ACAGACAAGTGTCTT  136

seq1  CATGATAGGATTTATTTAGTTTAAATATTTCT-CTTTGTCTGTGTTATGT  197
      |||||||||| ||| |||| |||||||||||| ||||||||||| |||| 
seq2  CATGATAGGA-TTAATTAG-TTAAATATTTCTCCTTTGTCTGTG-TATGA  183

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  233

seq1  TTCTTAATAGGCTTACAGAGATGGATTCTATCAACGCCTGGGCTATAGCT  297
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAATAGGCTTACAGAGATGGATTCTATCAACGCCTGGGCTATAGCT  283

seq1  GCTGTTCCATGCCAGAAACAGGAAGAGGACAGCCTGGACCACATTCTTTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCCATGCCAGAAACAGGAAGAGGACAGCCTGGACCACATTCTTTA  333

seq1  CCTCAAAAGGAGAAAGAATGAGCTCGTGTGTTAAAGCCCGTTCCTTCTCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAAGGAGAAAGAATGAGCTCGTGTGTTAAAGCCCGTTCCTTCTCC  383

seq1  ATACCACTGTTTCTCTGTCCTCCTTTGATTTTTCTGTTGCCCATCATGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCACTGTTTCTCTGTCCTCCTTTGATTTTTCTGTTGCCCATCATGGA  433

seq1  AAAAAAACCACAGTTTTAATTTTAAGAAGCAAAACAAAACAGAACTATTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACCACAGTTTTAATTTTAAGAAGCAAAACAAAACAGAACTATTT  483

seq1  TAGAATAAAATATTAAACATGAGAGTGATTGAAGCTCTGAGTGTTTTTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAAAATATTAAACATGAGAGTGATTGAAGCTCTGAGTGTTTTTTT  533

seq1  TTTCTTTCTTTTAAAATTAAAACAGAGAGCCGGTGTGTGGATGTCGGAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTTAAAATTAAAACAGAGAGCCGGTGTGTGGATGTCGGAAA  583

seq1  TAGGTGAGACTTGAGCTCTCCCTACAGGCTTTTGTTACAGTAGCTGTCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGAGACTTGAGCTCTCCCTACAGGCTTTTGTTACAGTAGCTGTCTG  633

seq1  GGAGGAATAGCAGAAACTAAAAATCATCATGAGGCATCCGTCAAAGAGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAATAGCAGAAACTAAAAATCATCATGAGGCATCCGTCAAAGAGTG  683

seq1  ATTCCCTTTGTCCAAGGCAAAGTCACAAGCTGCCACCTGGGTCGGCGTTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTTTGTCCAAGGCAAAGTCACAAGCTGCCACCTGGGTCGGCGTTG  733

seq1  AGGTCCTGCAGATTCCTGCCACCAGTGACACATTGCCACATTATTGAACC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTGCAGATTCCTGCCACCAGTGACACATTGCCACATTATTGAACC  783

seq1  ACAGGATCTTCTTTGCCTGTAGTGGCTCTCAATTCTTTATTGGAAACTAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATCTTCTTTGCCTGTAGTGGCTCTCAATTCTTTATTGGAAACTAA  833

seq1  GAGGAGAATAATGATACAAAACAACGAGCACAGTCACATAACTCAGAAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAATAATGATACAAAACAACGAGCACAGTCACATAACTCAGAAGT  883

seq1  GCCCAGGCTTCTTTCTACTCTGTTGCTGTCTCCCCAGGCTGGGTTTCCAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGCTTCTTTCTACTCTGTTGCTGTCTCCCCAGGCTGGGTTTCCAG  933

seq1  AGGATTACACTGACCCTTCCCATCTGAGCCTGAACTTTGTATCCACTCCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTACACTGACCCTTCCCATCTGAGCCTGAACTTTGTATCCACTCCA  983

seq1  GGTGACATTTCTATGGAAGTATCCCCCTCCCCTTTGCATAAGTCCTTTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACATTTCTATGGAAGTATCCCCCTCCCCTTTGCATAAGTCCTTTTA  1033

seq1  AGAAACAAATGGGCAGCAAAGTCACTAATCAACAAAAAGCTCATATCCTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAATGGGCAGCAAAGTCACTAATCAACAAAAAGCTCATATCCTA  1083

seq1  AACCCAATGTCAAAACTGTACCCTGGAATTC  1128
      |||||||||||||||||||||||||||||||
seq2  AACCCAATGTCAAAACTGTACCCTGGAATTC  1114

seq1: chr3_119516704_119517842
seq2: B6Ng01-110B20.g_67_1175

seq1  GAATTCCCCAGTTCGTAGAAATATCCTTAGTTCAGATACTGTTATCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAGTTCGTAGAAATATCCTTAGTTCAGATACTGTTATCTCTT  50

seq1  TCCCTACACCCTTACATTAGAGTAACAATAAAGACCCATGAATTTGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACACCCTTACATTAGAGTAACAATAAAGACCCATGAATTTGAAAA  100

seq1  AAAAAAAAAAAAACACGTCCTGATCAAGAGTGTAGAATGACAGGCTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAACACGTCCTGATCAAGAGTGTAGAATGACAGGCTTGCT  150

seq1  TGCAGACTTGGCATCCTAGTTCTTGGCATCCTCCGTTCTCCCGCAAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACTTGGCATCCTAGTTCTTGGCATCCTCCGTTCTCCCGCAAGGCA  200

seq1  CCTGATGAGATTTACAGCCTTCCTAGCCTGGGAGGTTTTCTTTTAAAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGAGATTTACAGCCTTCCTAGCCTGGGAGGTTTTCTTTTAAAGTC  250

seq1  TAATGAAGTTGTCCATGAGCTTCTGTTCTGAGTCCATTCTTAAATTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAGTTGTCCATGAGCTTCTGTTCTGAGTCCATTCTTAAATTCTTT  300

seq1  TCTTAATGAGACTAAGAACCTCAAGACGCCAGTTTCCCCCCCCCCCCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATGAGACTAAGAACCTCAAGACGCCAGTTTCCCCCCCCCCCCCCC  350

seq1  ATCACTAGGGCCTCACGCATACTAAGTGAGTAACATCACACAGCATCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTAGGGCCTCACGCATACTAAGTGAGTAACATCACACAGCATCCTT  400

seq1  ATCCCTTTCCTCTTCTTCTTTTGAGACAGGGTCTCACTAGTTTCCTCACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTTCCTCTTCTTCTTTTGAGACAGGGTCTCACTAGTTTCCTCACG  450

seq1  GTTTTCTTGAACTTGCTTTGCAGCCTAGACAGGTGTTTAATTTGCAATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTGAACTTGCTTTGCAGCCTAGACAGGTGTTTAATTTGCAATCC  500

seq1  TCCTGCATCAGGCTCTCGAATATCTGGGTTTAGAGGTCTATACCACTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATCAGGCTCTCGAATATCTGGGTTTAGAGGTCTATACCACTGGA  550

seq1  TTGGACTTATTGCGACATCAGTTACTTAGGAGCTAGTGATTTTTTTAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACTTATTGCGACATCAGTTACTTAGGAGCTAGTGATTTTTTTAGTA  600

seq1  CTTATGAATCTGACACGATATAGAAAGAGGCTGGGAAACCCGACCTCGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGAATCTGACACGATATAGAAAGAGGCTGGGAAACCCGACCTCGGT  650

seq1  TTCACGTTATCTAGGAGAAGCCTGGTACAGTAGTCTCATCAGAACAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGTTATCTAGGAGAAGCCTGGTACAGTAGTCTCATCAGAACAAAAT  700

seq1  AATCAAAGCTAGGGTAATAAAGAGGGAAGCAAGCATGCAAGCTGCTGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAGCTAGGGTAATAAAGAGGGAAGCAAGCATGCAAGCTGCTGTAG  750

seq1  AAGAATTAACATTTCCCCAG-AAAATCAGCTTTCTGTAACATAAAAGCAT  799
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAGAATTAACATTTCCCCAGAAAAATCAGCTTTCTGTAACATAAAAGCAT  800

seq1  -CCAAAGA-GGGAGAATCCTTTAAATATTGTGTG-TTTTTTTTTTTTTCA  846
       ||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  CCCAAAGAGGGGAGAATCCTTTAAATATTGTGTGTTTTTTTTTTTTTTCA  850

seq1  ACTTCAAAGAGGATACCCAGGACATGCAACTGTTTTTTAACATGAAAATC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAAGAGGATACCCAGGACATGCAACTGTTTTTTAACATGAAAATC  900

seq1  TTCAAAGAATATATTTCCCATGCAATACTTAAAATTCTCAAAGGGGGCTC  946
      |||||||||||||||||||||||||||||| ||||||||||  |||||| 
seq2  TTCAAAGAATATATTTCCCATGCAATACTT-AAATTCTCAA--GGGGCT-  946

seq1  CTTCGGGAGGCAAACCCTTTGAAGGTGAAATCTCTTCAATCATGTGAGTT  996
      ||||||||||||||||||||||  ||||||||||||| |||||||||| |
seq2  CTTCGGGAGGCAAACCCTTTGA--GTGAAATCTCTTC-ATCATGTGAG-T  992

seq1  TTTTTCAAAGAGAAAAACCTTTTTCAAATTTTCTTTAAGCCAGGGACATT  1046
      |||||||||||||||   | |||||||   |||||  ||||| |||||||
seq2  TTTTTCAAAGAGAAA---CCTTTTCAA---TTCTT--AGCCA-GGACATT  1033

seq1  TTAAGAAGGACTTATTTCAGAAATGAGGAAGAGAAACACTGTCTTTTCCA  1096
      |  ||||||||||| ||||| ||||| |||||||||| || |||||  ||
seq2  T--AGAAGGACTTA-TTCAG-AATGA-GAAGAGAAAC-CT-TCTTT--CA  1074

seq1  TGCTCTATGCTTTATTGGACTTCTCCAAAGAGGAGCCATAGAA  1139
      |||    ||  |||||||||||||| || ||     |||||||
seq2  TGC---CTGGCTTATTGGACTTCTCAAAGGA-----CATAGAA  1109