BAC Information

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BAC

Clone NameB6Ng01-112G14
Chromosome3 (Build37)3 (Build37)
Map Location 93,979,828 - 93,980,70945,385,685 - 45,386,216
singlet/doubletsingletsinglet
Overlap geneLOC100043188
Upstream geneEG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625
Downstream geneEG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112G14.bB6Ng01-112G14.g
ACCDH918485DH918486
length8851,112
definitionDH918485|Mus musculus domesticus DNA, BAC clone: B6Ng01-112G14, 5' end.DH918486|Mus musculus domesticus DNA, BAC clone: B6Ng01-112G14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,979,828 - 93,980,709)(45,385,685 - 45,386,216)
sequence
gaattcttggccagctacaaacaggcagcagtctgtgcacagggaattct
cccacagctcccctaggtcatctgcaatcatgtgtcttggatccttgatt
gcaggtgttatgttctgttcaggtgtgttaaagaaggttcccactatgct
cacttggcagcagagggtaagctggtcttcagggaggagccaaggtggat
tggagaggaggaaatctcgtaggataaactttttgaatcccctgtattgg
tttttttgaaagctaacgacatttgtcctctccatactttgatatttctc
tccttgggaatttatgatccagaactcatactttgcccaaactgggctct
tttgacagtggagtaaccccaggtaaactgacaggtaatctttgctttct
tcatcacttccgtttgggtgtaccctcaaacaccattccactttgtcact
ggcctccagtgagaattttgggcttgtaatcttttccctagttccatcca
tgaaaaatgaaaagttgctaatggtccacttgtagcagaagttgtaaacg
ctgatatgtgtgtatccccaccctgtggcttccatgtctcctgacatttc
tgctggaggtagtttcgagatttaagttgatctgtaaaaaagaactgtaa
gttatttccctttgatcctgttagatacaattatagatacagttttagat
tttagtttcaatttctcctaaattgccccttctattatgtttggaaactt
tgtgtttctaccataattttttttctctaggtttcaatatttgttttata
gaagataatatagatatctagtgagttttaaagtctcccccgcttctctc
ctgctctctgtctcccccctctgtggttgtgctct
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagggagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttccctgccgtctactcctcttgggtgaatttgcttcctttttttctaga
gcttttagatgtgttgtcaagctggtagtatgtgctctctccgtttttct
tgaaggcactcatagctatgagtttccctcttagaatgctttcattgtgt
cctaaggtttgggtacgttggtggcttcattttcataactctaaaaagtc
tttaaattctttcttaattccttcctgaccaggtatcattgagaaaaggt
gttcagtttcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93979828_93980709
seq2: B6Ng01-112G14.b_44_928

seq1  GAATTCTTGGCCAGCTACAAACAGGCAGCAGTCTGTGCACAGGGAATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGCCAGCTACAAACAGGCAGCAGTCTGTGCACAGGGAATTCT  50

seq1  CCCACAGCTCCCCTAGGTCATCTGCAATCATGTGTCTTGGATCCTTGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGCTCCCCTAGGTCATCTGCAATCATGTGTCTTGGATCCTTGATT  100

seq1  GCAGGTGTTATGTTCTGTTCAGGTGTGTTAAAGAAGGTTCCCACTATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGTTATGTTCTGTTCAGGTGTGTTAAAGAAGGTTCCCACTATGCT  150

seq1  CACTTGGCAGCAGAGGGTAAGCTGGTCTTCAGGGAGGAGCCAAGGTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGCAGCAGAGGGTAAGCTGGTCTTCAGGGAGGAGCCAAGGTGGAT  200

seq1  TGGAGAGGAGGAAATCTCGTAGGATAAACTTTTTGAATCCCCTGTATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGGAGGAAATCTCGTAGGATAAACTTTTTGAATCCCCTGTATTGG  250

seq1  TTTTTTTGAAAGCTAACGACATTTGTCCTCTCCATACTTTGATATTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGAAAGCTAACGACATTTGTCCTCTCCATACTTTGATATTTCTC  300

seq1  TCCTTGGGAATTTATGATCCAGAACTCATACTTTGCCCAAACTGGGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGGAATTTATGATCCAGAACTCATACTTTGCCCAAACTGGGCTCT  350

seq1  TTTGACAGTGGAGTAACCCCAGGTAAACTGACAGGTAATCTTTGCTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAGTGGAGTAACCCCAGGTAAACTGACAGGTAATCTTTGCTTTCT  400

seq1  TCATCACTTCCGTTTGGGTGTACCCTCAAACACCATTCCACTTTGTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACTTCCGTTTGGGTGTACCCTCAAACACCATTCCACTTTGTCACT  450

seq1  GGCCTCCAGTGAGAATTTTGGGCTTGTAATCTTTTCCCTAGTTCCATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCAGTGAGAATTTTGGGCTTGTAATCTTTTCCCTAGTTCCATCCA  500

seq1  TGAAAAATGAAAAGTTGCTAATGGTCCACTTGTAGCAGAAGTTGTAAACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATGAAAAGTTGCTAATGGTCCACTTGTAGCAGAAGTTGTAAACG  550

seq1  CTGATATGTGTGTATCCCCACCCTGTGGCTTCCATGTCTCCTGACATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATGTGTGTATCCCCACCCTGTGGCTTCCATGTCTCCTGACATTTC  600

seq1  TGCTGGAGGTAGTTTCGAGATTTAAGTTGATCTGTAAAAAAGAACTGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAGGTAGTTTCGAGATTTAAGTTGATCTGTAAAAAAGAACTGTAA  650

seq1  GTTATTTCCCTTTGATCCTGTTAGATACAATTATAGATACAG-TTTAGAT  699
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTTATTTCCCTTTGATCCTGTTAGATACAATTATAGATACAGTTTTAGAT  700

seq1  TTTAGTTTCAATTTCTCCTAAATTGCCCCTTCTATTATG-TTGGAAAC-T  747
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  TTTAGTTTCAATTTCTCCTAAATTGCCCCTTCTATTATGTTTGGAAACTT  750

seq1  TGTGTTTCTACCAT-ATTTTTTTTCTCTAGGTTTCAATATTTGTTTTATA  796
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCTACCATAATTTTTTTTCTCTAGGTTTCAATATTTGTTTTATA  800

seq1  GAAGATAATATAGATATCTAGTGAGTTTT-AAGTCTCCCCCGCTCTCTCT  845
      ||||||||||||||||||||||||||||| |||||||||||||| |||||
seq2  GAAGATAATATAGATATCTAGTGAGTTTTAAAGTCTCCCCCGCT-TCTCT  849

seq1  CCTGCTCTCTGTCTCCCCCCTCTGTGTTTGTGTCTCT  882
      |||||||||||||||||||||||||| ||||| ||||
seq2  CCTGCTCTCTGTCTCCCCCCTCTGTGGTTGTG-CTCT  885

seq1: chr3_45385685_45386216
seq2: B6Ng01-112G14.g_654_1177 (reverse)

seq1  TGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAAT  50
      |||||||||||||   || |||||||||||||| ||||| ||||||||||
seq2  TGGAAACTGAACA--CCTTTTCTCAATGATACC-TGGTC-AGGAAGGAAT  46

seq1  AAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCA-CA  99
       ||||||||| |||||||||||||||||||  ||||||||||||||| ||
seq2  TAAGAAAGAATTTAAAGACTTTTTAGAGTT--ATGAAAATGAAGCCACCA  94

seq1  ACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACT  149
      ||||||||||||| || |||||||||||||||| ||||||||||||||||
seq2  ACGTACCCAAACC-TTAGGACACAATGAAAGCA-TTCTAAGAGGGAAACT  142

seq1  CATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCA  199
      |||||||||||||||||||||||||||   ||||||||||||||||| ||
seq2  CATAGCTATGAGTGCCTTCAAGAAAAA--CGGAGAGAGCACATACTACCA  190

seq1  GCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCC  240

seq1  AAGAGGAGTAGACGGCA-GGAAATAATCAAACTCAGGGGTGAAATCAACC  298
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAGAGGAGTAGACGGCAGGGAAATAATCAAACTCAGGGGTGAAATCAACC  290

seq1  AAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGG  340

seq1  TTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCCCTAA  390

seq1  AGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAG  440

seq1  ACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTAC  490

seq1  AAAAGGCTATACTCAACAAAACTGGAAAACCTGG  532
      ||||||||||||||||||||||||||||||||||
seq2  AAAAGGCTATACTCAACAAAACTGGAAAACCTGG  524