BAC Information

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BAC

Clone NameB6Ng01-117B04
Chromosome3 (Build37)
Map Location 124,306,582 - 124,307,806
singlet/doubletsinglet
Overlap genenone
Upstream geneNdst3, LOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817
Downstream geneLOC668820, Ndst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117B04.bB6Ng01-117B04.g
ACCDH921907DH921908
length1,2051,259
definitionDH921907|Mus musculus domesticus DNA, BAC clone: B6Ng01-117B04, 5' end.DH921908|Mus musculus domesticus DNA, BAC clone: B6Ng01-117B04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtaagtaaccttcacaactgggttaacaaatgtgccatttaaa
aattgactttagtcatatccgtagcacattgaaaaaatgtaaagatattg
tactgtaatcacattgttttaaattttattatctttttaaaaaatctgtg
aatttcaaaagttgtgataagtatttattacaaaatccattttgtatgct
tataaaagtattaaatgttttatgatataattgtttttcaaataataaat
atttggttgtcccaaagaacataaactttaagtccattttgtctctgttt
tgacatgaaagaataataatttgccagcaaattttaataaatgaataata
aagcatgagtaaataaatgggcaaaactaataatagtcaaatttcatcat
agataatatttttagttttctaatttgagatgatgatgacccagtgtact
tttaatttaatagtataaacaatagttacataaaaatttaaatataaaaa
gaaatctgaagcttattgttatcattctgtctaagctccaccccacagtt
acctggcaacagccaggtgtgcctgacccactatagaagcggctgcttac
cccctccttctctcctgttcctcttctttccttgctctttctcagcttcc
cttcccctctctctccccattccctcacccccatccggttccatgtgctc
atggactctactcctctacctctctctctctctctctctcaatctctgcc
tctactaccctcttgaataaactctattctatagtatacagtctcattct
ctggctggtccctcaaggggaagggatcccttggcatgggcccactgagg
gaccccttctctcatccctcaccccacttccatagaacatatcccttcca
ctctttatctttttataaacacatcacttacaatgatacaatagtgaaat
tatactcgaagcatgaacattatagaatagggatatatttacttgcaaat
tattgcaatttatatgtcatattatttacagagcagattgagaaaataca
ggagtaaacattttacacttggaggagaattattaacaaagactttgtaa
gaactttaaaatatgcaagtttgttatgggtatttgaaatctgttattag
gtcatcaggagatgggtaattgaatgaaactttgctctgttaatttatcc
aaaaa
gaattcatatgtgcagatgccctggtttgtgcagatgacattgtccttat
tgtccattcactgccactggctcttaaagtctttctgccccctcttccac
aagaagctttgtgagaagaggatgcagtgttgatgtgccatttagggttg
agcattcttaaggctgtcaatatctacctcatcacctattgtattaaatc
tatgggtaaagcaataagtaattaaggttcatttttaatactatgctcat
ttaacagagtaatagaaaagttgcaggttcttgacctgacaacatttcca
tgtatgcttttttattggatattttctttatttacatttcaaatgttatc
tcctttccttgtttcctttctgaaaaacacccttcccctatcccctcctc
cctcccgttgctcaccaacctacccactcctgcctcctggccctggcatt
ccctgacactgggcatagagccttcaaaggacaaatggcctctcctctca
ttgatgtctgactaggccatcctctgctacatatgcagctggagccatga
gtcccaccatgtgtgctctttggttggtggtttagaccctgggagctctg
gggatactgactagttcatatccttgttcctcctatgaagcaggatttac
ataaagtcatgaagtagatgaaaactcccatatcaatttcactattacac
ccctaaaaacaacttacagtaattactgtagttcacggactttacagcta
tgttaaaactgatgatatttttttctgctataaaaaaatctgtgtaatat
gaaactatgcatatgcaagatgaaaactaatccatttgaatggataccac
ttccatgtcagtaccagtttgatttgtccatgttctgtttctctcataca
tagcattttcagcatagttttttactattactaaagggtaataggagcat
tgactacaatcagtaaggtttggaatctatagaccaagaagtcaataatt
ctaaacgagagacccatacttagcctccttaggacttgcattagttagtt
tgttgtcctctaataggaatattatttgtttatttataggaaaagattaa
ataagcaaaaaccccaccatttactgtattatctatggattaatcatagg
atgaggtattgacaataataattccatggcatagacttcctcactcgaag
accttctatgtaaagttctccggtttcccttaggacttttgtaaagagga
ctcgtatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_124306582_124307806
seq2: B6Ng01-117B04.b_43_1247

seq1  GAATTCTGTAAGTAACCTTCACAACTGGGTTAACAAATGTGCCATTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAAGTAACCTTCACAACTGGGTTAACAAATGTGCCATTTAAA  50

seq1  AATTGACTTTAGTCATATCCGTAGCACATTGAAAAAATGTAAAGATATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACTTTAGTCATATCCGTAGCACATTGAAAAAATGTAAAGATATTG  100

seq1  TACTGTAATCACATTGTTTTAAATTTTATTATCTTTTTAAAAAATCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAATCACATTGTTTTAAATTTTATTATCTTTTTAAAAAATCTGTG  150

seq1  AATTTCAAAAGTTGTGATAAGTATTTATTACAAAATCCATTTTGTATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAAAAGTTGTGATAAGTATTTATTACAAAATCCATTTTGTATGCT  200

seq1  TATAAAAGTATTAAATGTTTTATGATATAATTGTTTTTCAAATAATAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGTATTAAATGTTTTATGATATAATTGTTTTTCAAATAATAAAT  250

seq1  ATTTGGTTGTCCCAAAGAACATAAACTTTAAGTCCATTTTGTCTCTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTTGTCCCAAAGAACATAAACTTTAAGTCCATTTTGTCTCTGTTT  300

seq1  TGACATGAAAGAATAATAATTTGCCAGCAAATTTTAATAAATGAATAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGAAAGAATAATAATTTGCCAGCAAATTTTAATAAATGAATAATA  350

seq1  AAGCATGAGTAAATAAATGGGCAAAACTAATAATAGTCAAATTTCATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGAGTAAATAAATGGGCAAAACTAATAATAGTCAAATTTCATCAT  400

seq1  AGATAATATTTTTAGTTTTCTAATTTGAGATGATGATGACCCAGTGTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATATTTTTAGTTTTCTAATTTGAGATGATGATGACCCAGTGTACT  450

seq1  TTTAATTTAATAGTATAAACAATAGTTACATAAAAATTTAAATATAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTAATAGTATAAACAATAGTTACATAAAAATTTAAATATAAAAA  500

seq1  GAAATCTGAAGCTTATTGTTATCATTCTGTCTAAGCTCCACCCCACAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTGAAGCTTATTGTTATCATTCTGTCTAAGCTCCACCCCACAGTT  550

seq1  ACCTGGCAACAGCCAGGTGTGCCTGACCCACTATAGAAGCGGCTGCTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCAACAGCCAGGTGTGCCTGACCCACTATAGAAGCGGCTGCTTAC  600

seq1  CCCCTCCTTCTCTCCTGTTCCTCTTCTTTCCTTGCTCTTTCTCAGCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCTTCTCTCCTGTTCCTCTTCTTTCCTTGCTCTTTCTCAGCTTCC  650

seq1  CTTCCCCTCTCTCTCCCCATTCCCTCACCCCCATCCGGTTCCATGTGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCTCTCTCTCCCCATTCCCTCACCCCCATCCGGTTCCATGTGCTC  700

seq1  ATGGACTCTACTCCTCTACCTCTCTCTCTCTCTCTCTCTCAATCTCTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTCTACTCCTCTACCTCTCTCTCTCTCTCTCTCTCAATCTCTGCC  750

seq1  TCTACTACCCTCTTGAATAAACTCTATTCTATAGTATACAGTCTCATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTACCCTCTTGAATAAACTCTATTCTATAGTATACAGTCTCATTCT  800

seq1  CTGGCTGGTCCCTCAAGGGGAAGGGATCCCTTGGCATGGGCCCACTGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGGTCCCTCAAGGGGAAGGGATCCCTTGGCATGGGCCCACTGAGG  850

seq1  GACCCCTTCTCTCATCCCTCACCCCACTTCCATAGAACATATCCCTTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCTTCTCTCATCCCTCACCCCACTTCCATAGAACATATCCCTTCCA  900

seq1  CTCTTTATCTTTTTATAAACACATCACTTACAATGATACAATAGTGAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATCTTTTTATAAACACATCACTTACAATGATACAATAGTGAAAT  950

seq1  TATACTCGAAGCATGAACATTATAGAATAGGAATATATTTACTTGCAAAT  1000
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATACTCGAAGCATGAACATTATAGAATAGGGATATATTTACTTGCAAAT  1000

seq1  TATTGCAATTTATAATGTCATAATTATTTACAAGAGCAGAATGAGAAAAT  1050
      ||||||||||||| ||||||| ||||||||| |||||||| |||||||||
seq2  TATTGCAATTTAT-ATGTCAT-ATTATTTAC-AGAGCAGATTGAGAAAAT  1047

seq1  ACAGGAAGTAAACATTTTACACTTGGAGGAGAAATTATTAAACAAAGACA  1100
      ||||| ||||||||||||||||||||||||| ||||||| ||||||||| 
seq2  ACAGG-AGTAAACATTTTACACTTGGAGGAG-AATTATT-AACAAAGAC-  1093

seq1  TCTGTAAAGAACTTTATAATATGCAAAGTTTGTAATGGTTAAATATTGAT  1150
      | ||| |||||||||| ||||||| |||||||| |||| ||    |||| 
seq2  TTTGT-AAGAACTTTAAAATATGC-AAGTTTGTTATGGGTA---TTTGAA  1138

seq1  ATACATGTTA-TAAGTCATCAGGAGATGAGTTACATATGAAATGAAAACT  1199
      ||   ||||| || |||||||||||||| ||     ||  |||| |||||
seq2  AT--CTGTTATTAGGTCATCAGGAGATGGGT----AATTGAATG-AAACT  1181

seq1  TTGCTCTGTAAAATTTTAATCAAAAA  1225
      ||||||||| ||  ||||  ||||||
seq2  TTGCTCTGTTAA--TTTATCCAAAAA  1205