BAC Information

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BAC

Clone NameB6Ng01-118P18
Chromosome3 (Build37)
Map Location 72,980,475 - 72,981,582
singlet/doubletsinglet
Overlap genenone
Upstream gene2010204N08Rik, Slitrk3
Downstream geneBche, LOC667425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118P18.bB6Ng01-118P18.g
ACCDH923317DH923318
length1,1031,173
definitionDH923317|Mus musculus domesticus DNA, BAC clone: B6Ng01-118P18, 5' end.DH923318|Mus musculus domesticus DNA, BAC clone: B6Ng01-118P18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctagtagtttaaatgattccatggtggagtccatagtaaaactaa
gaaaaaagaacaaatgacctaaaaacactaaaaacacacacacaaaaatt
gccagtgcactgagaccacaggttattgccgattgtgcctcctaaaagct
tctgcaaaacctgcagtttctcagttcacagtggctacgcaaattctgaa
gtgcctgagtatgacctgcttccgtgagagagcacacacattcacatatt
tgctctcctagtgcactttaattgtggtttgtgacatggtagctaattca
tcaaaatttgtcttcacagaagaataggaaggtcttaaataagttgtctt
acataaatcaattatttttaatcactctggttctaatatgtgtacccaaa
ttaatagtgcttaagtcatgataatactgatttatattttaagaatctac
aattacactccactataatgatcatatttaatagaacatatctttataga
tgggaatattttagaacaccagaagctttatgatattcaaaatcagtagc
agttatagatattatatatatatatagtcttctcaattttttagaaaata
tctaaggaagaaaaattaacactttgctgtatatgtgttgggggcctcat
atcagctggtgtatgttgcctggttggtggtccagtgtttgagtgatctt
ggggtccaggataattgagactgctggtcctcctaccggatcaccctcct
cctcagcttcttccaggctttccctaattcaaccacagggatcagcagtg
tctgcccattggttgggtgcaaatatctgcaactgactctttcatctgct
ttttgggtcttccagagtgtggtcatgataggtaccttttgtgagcactt
catagccttagtaatagtgtcaggccttgggaccttccccttgagatgcc
caaccccaacacacatacagtagaggactgccaggtttgggctctgtcag
agaagatgcatgtaacactcagagactggagcctcaggagtctagaggtt
tggtatagtaggagtgggtgtggggacatttcccatggagacaggagttt
gtg
gaattcattaagccctatttaaagcattcagctgcttttcttatccaaat
tccaaacatctttcatagtcttccaagcaacagaatggccaggtctgtca
cagcaacactctactctctgttattaacttctgccttagtcactgatcta
ttgatttatgaaacaccatgttcaagacaactcataaaagaaagcgttta
attgagaaattgcttacacttttagagggtttgctgattattattattat
tattattattattattattattattattatgtcaggaagcaaataggcat
ggtgctgcaacagcactaaaatgctctatatcctgatctgcaagcaatag
gcagacagagacactgcatctgctttgggcttttgaaacctcaaagccca
aaccctgtaaaacaccttcttcttcaagggcacatctcttctaatataag
ccacatctactagtccttcccactcagttccattctctgaggaccaatga
tttaaacatataagtaaaagaacagtgacggtggggcagtcatttttatt
caaaccaccatgacctgcaacactaaaaatgctcagaaatatagaaatta
tattcacttattcatactcttctaaacactaataatgttccactataatg
cattgaattttgtaattgcactatttccttggtagtataataatgattaa
gctctagtgaacatttaagagaaactgggtcctctcttaggtacttgaca
ttttatatttaatttatatccactgtatattatcaatatgctttatatat
ttcattctctcaattttaaattgtcattaaaatactaagggaatgttttc
taaatggatgaatttattttgaaatacatagcagtaactctcatttgaaa
gtgactttaaaagtgtggaatttgaaactaaattttatttttatatcttt
atgagagtcaggaatgtgtctttattttagatacatatatacatcattac
tcttcatttgctttctcaacctccataaactgtctgatctctgatcatac
tatcttatatctctactacataatgtatattacatgagaatatttctaat
tatgtcaggcgtatggaggctgctttagacatacgacaagtttcatacct
tcaagcctctctccgtcgacaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_72980475_72981582
seq2: B6Ng01-118P18.b_49_1151

seq1  GAATTCTAGTAGTTTAAATGATTCCATGGTGGAGTCCATAGTAAAACTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTAGTTTAAATGATTCCATGGTGGAGTCCATAGTAAAACTAA  50

seq1  GAAAAAAGAACAAATGACCTAAAAACACTAAAAACACACACACAAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGAACAAATGACCTAAAAACACTAAAAACACACACACAAAAATT  100

seq1  GCCAGTGCACTGAGACCACAGGTTATTGCCGATTGTGCCTCCTAAAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGCACTGAGACCACAGGTTATTGCCGATTGTGCCTCCTAAAAGCT  150

seq1  TCTGCAAAACCTGCAGTTTCTCAGTTCACAGTGGCTACGCAAATTCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAAACCTGCAGTTTCTCAGTTCACAGTGGCTACGCAAATTCTGAA  200

seq1  GTGCCTGAGTATGACCTGCTTCCGTGAGAGAGCACACACATTCACATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGAGTATGACCTGCTTCCGTGAGAGAGCACACACATTCACATATT  250

seq1  TGCTCTCCTAGTGCACTTTAATTGTGGTTTGTGACATGGTAGCTAATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCCTAGTGCACTTTAATTGTGGTTTGTGACATGGTAGCTAATTCA  300

seq1  TCAAAATTTGTCTTCACAGAAGAATAGGAAGGTCTTAAATAAGTTGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATTTGTCTTCACAGAAGAATAGGAAGGTCTTAAATAAGTTGTCTT  350

seq1  ACATAAATCAATTATTTTTAATCACTCTGGTTCTAATATGTGTACCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATCAATTATTTTTAATCACTCTGGTTCTAATATGTGTACCCAAA  400

seq1  TTAATAGTGCTTAAGTCATGATAATACTGATTTATATTTTAAGAATCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGTGCTTAAGTCATGATAATACTGATTTATATTTTAAGAATCTAC  450

seq1  AATTACACTCCACTATAATGATCATATTTAATAGAACATATCTTTATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACACTCCACTATAATGATCATATTTAATAGAACATATCTTTATAGA  500

seq1  TGGGAATATTTTAGAACACCAGAAGCTTTATGATATTCAAAATCAGTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATATTTTAGAACACCAGAAGCTTTATGATATTCAAAATCAGTAGC  550

seq1  AGTTATAGATATTATATATATATATAGTCTTCTCAATTTTTTAGAAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAGATATTATATATATATATAGTCTTCTCAATTTTTTAGAAAATA  600

seq1  TCTAAGGAAGAAAAATTAACACTTTGCTGTATATGTGTTGGGGGCCTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGAAGAAAAATTAACACTTTGCTGTATATGTGTTGGGGGCCTCAT  650

seq1  ATCAGCTGGTGTATGTTGCCTGGTTGGTGGTCCAGTGTTTGAGTGATCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTGGTGTATGTTGCCTGGTTGGTGGTCCAGTGTTTGAGTGATCTT  700

seq1  GGGGTCCAGGATAATTGAGACTGCTGGTCCTCCTACCGGATCACCCTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCCAGGATAATTGAGACTGCTGGTCCTCCTACCGGATCACCCTCCT  750

seq1  CCTCAGCTTCTTCCAGGCTTTCCCTAATTCAACCACAGGGATCAGCAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCTTCTTCCAGGCTTTCCCTAATTCAACCACAGGGATCAGCAGTG  800

seq1  TCTGCCCATTGGTTGGGTGCAAATATCTGCAACTGACTCTTTCATCTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCATTGGTTGGGTGCAAATATCTGCAACTGACTCTTTCATCTGCT  850

seq1  TTTTGGGTCTTCCAGAGTGTGGTCATGATAGGTACCTTTTTGTGAGCACT  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTTGGGTCTTCCAGAGTGTGGTCATGATAGGTACC-TTTTGTGAGCACT  899

seq1  TCATAGCCTTAGTAATAGTGTCAGGCCTTGGGACC-TCCCCTTGAGATGC  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCATAGCCTTAGTAATAGTGTCAGGCCTTGGGACCTTCCCCTTGAGATGC  949

seq1  CCAACCCCAACACACATACAGTAGAGGACTGCCAGGTTTGGGCTCTGTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCCAACACACATACAGTAGAGGACTGCCAGGTTTGGGCTCTGTCA  999

seq1  GAGAAGATGCATGTAACACTCAAGAGACTGGAGGCCTCAGGGAGTCTAGA  1049
      ||||||||||||||||||||| |||||||||| |||||| ||||||||||
seq2  GAGAAGATGCATGTAACACTC-AGAGACTGGA-GCCTCA-GGAGTCTAGA  1046

seq1  GGTCTGGTATAGTAGAAGGTGGGTTGTGGGGACA-TTCCCATGGAGACAA  1098
      ||| ||||||||||| | ||||| |||||||||| ||||||||||||| |
seq2  GGTTTGGTATAGTAGGA-GTGGG-TGTGGGGACATTTCCCATGGAGAC-A  1093

seq1  GGAGTTTGTG  1108
      ||||||||||
seq2  GGAGTTTGTG  1103