BAC Information

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BAC

Clone NameB6Ng01-119B15
Chromosome3 (Build37)
Map Location 126,594,456 - 126,717,438
singlet/doubletdoublet
Overlap geneAnk2
Upstream geneUgt8a, Arsj, Camk2d
Downstream geneLOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119B15.bB6Ng01-119B15.g
ACCDH923403DH923404
length1,1831,100
definitionDH923403|Mus musculus domesticus DNA, BAC clone: B6Ng01-119B15, 5' end.DH923404|Mus musculus domesticus DNA, BAC clone: B6Ng01-119B15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,716,227 - 126,717,438)(126,594,456 - 126,595,465)
sequence
gaattcattctcatccaagaacttactaagaccaaatgcttacttctttt
atatataaaaaaatagaaattaaaatgtcattttaattaaaaataattga
tctgctgacactttgaaagggcagtattggttcttgggagatattcggtg
cttttgatggggacttaaattgtacccagtacagaagtatttgctgggtt
tattttttgggccctggggagtgttagagttctctgactcctgctattgt
tccagaaaagcatgaggctgaggtgtctgtccaggagggtgggtgacatc
atagggcacaagctgtgccacctggaggtttcaggactgggactcatgct
atttatagcgtgctgctcattgaagtgcctcagttggttaggctcgcaga
acattgagggtatgcatataaaatgtgtagggcaagcattttttaaaaac
agtgttaaagcttcagtttgtggttaactgttgagtgctcattagccatt
ggcatacaaggacaatggatttgactcgaggaattgatccttggacagca
tggtctttggggaaagaagacgaatgtcactatgttaaaaaccaatgttt
ttagtagaataccctttttattttattctgtagatcatctctctggccag
ttttgcagaaagtacatcagctgaatcaaatcgttttcttttcaaccaaa
gcttcataaaataatctaaaacttaagtaaacaaatttggaatggaaagt
ataaaagagtctataagaaactgaagacagctattaatttggtcgtgttt
gttttagatggggcaagagcaagcaaagacgtgcctccggtgttctgctt
tccattcataaatcaaagcggtttactgaaccagtggaggttatgaatct
caagtctattaatgtcaagacccagtccccagatttcagacacatttgtt
gttattgtgtttttactccatcagcctagaaagctcctaccaggtttggg
taaccttattcctacctgtagactatccaggactggcagattcatgcatc
attttacactagaggactcaacaagttgctatagtaacaaaaatttgtag
gattaagggaaatcctattttacattctctccattcttggtcgtcggaca
tagagcatcacacactccctgcatgtaggcagc
gaattcttctgatctttgctatacatacacacttaccaactcctagatct
agccaggattccacttccagtgttctgggctcatctgactatactggctc
cttttgtgtgtcaattgatgcaagctagagtcatcagagaggaaggaacc
tcagttaagaaaatgcctccatgaaatctagctttaaagccttttctcaa
ttcatgatcagtgggagagagcccagcacatggcaagtggtgccttcctt
ggggtagtagtcctaggctctataagaaagtaagctgagcaagccatgtg
aagcaagccagtaagcaacacccctccatggcctcttcctaagctcttgc
ctccaggatctagccttgtttgtgtttctgttctgacttccttcagtgat
taacagaaatgtgcaagtataaaccaacaaaccctttccttcccaacttg
ctttttgctcatagtgtttagccacagcaatagaaaccctaagacaatga
ccattcttgtatggtctgctaggcttctaccatgaccttccatgcctgtt
actgacccacaggctctattcatatcatatccatactctctagaaagcaa
gatcctgaacatctttttctaggatctgcctcagtgagtctgcctgatct
taccctccacgtatccaccaaaagccccaaatatcctcaaactccagact
ttgaccaaaatgcatattgttcacatcaccctagtcccctatatctacct
gactttatcccatttaagccatatccatccctaggcccaacttgacccac
aatcctctcttctggcctatcctgttctgtccatatctgatacaaaacta
acaaaacaagtctacatgtcatgatttaatcataaaattcaaacaacatg
agagattagcaaggatcccagtcctatcagtcttgtaaaaaatacttgcc
aataaagattatctgataaagatatatataataaacaaagattatgaatt
taagaattacaaaggaacagctaaatgactagaaatacttaaggagaata
acgcccaggtatacccaggaaaacacaaactaagactggataacaataaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_126716227_126717438
seq2: B6Ng01-119B15.b_47_1229 (reverse)

seq1  GCTG-CTACATGCAGGG---GAGTGAAGCCCTTCTATAGTCCGACGACAG  46
      |||| ||||||||||||   | |||| ||   ||||| ||||||||||  
seq2  GCTGCCTACATGCAGGGAGTGTGTGATGC---TCTAT-GTCCGACGACCA  46

seq1  AGAAATGTGAGAGAAATGTAAAAATTAGGGATTTTCCCCCTAAATTCCTT  96
      || |||| ||||| |||||||||  || ||||||   |||| |||  | |
seq2  AG-AATG-GAGAG-AATGTAAAA--TA-GGATTT---CCCTTAAT--CCT  85

seq1  ACAAAATTTTTGTTAACCTATTAAGCAAACTTTGTTGAGT-CTCTAGTTG  145
      || ||||||||||||  ||||  |||||   ||||||||| |||||| ||
seq2  AC-AAATTTTTGTTA--CTAT--AGCAA--CTTGTTGAGTCCTCTAG-TG  127

seq1  TAAAAATTGATGGCATGAAATCTGCCAGTCCTGGATAAGTCTACAGGTTA  195
      |||||  |||| ||||| |||||||||||||||||| |||||||||| ||
seq2  TAAAA--TGAT-GCATG-AATCTGCCAGTCCTGGAT-AGTCTACAGG-TA  171

seq1  GGAATAAGGTTTACCCAAACCTGGTAGGAGCTTTCTTAGGCTTGATGGAG  245
      ||||||||| ||||||||||||||||||||||||| ||||| ||||||||
seq2  GGAATAAGG-TTACCCAAACCTGGTAGGAGCTTTC-TAGGC-TGATGGAG  218

seq1  TAAAAACAACAATAACAACAAATGTGTCTGAAATCTTGGGGACTGGGTCT  295
      ||||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  TAAAAAC-ACAATAACAACAAATGTGTCTGAAATC-TGGGGACTGGGTCT  266

seq1  TGACATTAATAGACTTGAGATTCATAACCTCCACTGGTTCAGTAAACCGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTAATAGACTTGAGATTCATAACCTCCACTGGTTCAGTAAACCGC  316

seq1  TTTGATTTATGAATGGAAAGCAGAACACCGGAGGCACGTCTTTGCTTGCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTATGAATGGAAAGCAGAACACCGGAGGCACGTCTTTGCTTGCT  366

seq1  CTTGCCCCATCTAAAACAAACACGACCAAATTAATAGCTGTCTTCAGTTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCCATCTAAAACAAACACGACCAAATTAATAGCTGTCTTCAGTTT  416

seq1  CTTATAGACTCTTTTATACTTTCCATTCCAAATTTGTTTACTTAAGTTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGACTCTTTTATACTTTCCATTCCAAATTTGTTTACTTAAGTTTT  466

seq1  AGATTATTTTATGAAGCTTTGGTTGAAAAGAAAACGATTTGATTCAGCTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTTTATGAAGCTTTGGTTGAAAAGAAAACGATTTGATTCAGCTG  516

seq1  ATGTACTTTCTGCAAAACTGGCCAGAGAGATGATCTACAGAATAAAATAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTTTCTGCAAAACTGGCCAGAGAGATGATCTACAGAATAAAATAA  566

seq1  AAAGGGTATTCTACTAAAAACATTGGTTTTTAACATAGTGACATTCGTCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTATTCTACTAAAAACATTGGTTTTTAACATAGTGACATTCGTCT  616

seq1  TCTTTCCCCAAAGACCATGCTGTCCAAGGATCAATTCCTCGAGTCAAATC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCCCAAAGACCATGCTGTCCAAGGATCAATTCCTCGAGTCAAATC  666

seq1  CATTGTCCTTGTATGCCAATGGCTAATGAGCACTCAACAGTTAACCACAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCCTTGTATGCCAATGGCTAATGAGCACTCAACAGTTAACCACAA  716

seq1  ACTGAAGCTTTAACACTGTTTTTAAAAAATGCTTGCCCTACACATTTTAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGCTTTAACACTGTTTTTAAAAAATGCTTGCCCTACACATTTTAT  766

seq1  ATGCATACCCTCAATGTTCTGCGAGCCTAACCAACTGAGGCACTTCAATG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATACCCTCAATGTTCTGCGAGCCTAACCAACTGAGGCACTTCAATG  816

seq1  AGCAGCACGCTATAAATAGCATGAGTCCCAGTCCTGAAACCTCCAGGTGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCACGCTATAAATAGCATGAGTCCCAGTCCTGAAACCTCCAGGTGG  866

seq1  CACAGCTTGTGCCCTATGATGTCACCCACCCTCCTGGACAGACACCTCAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTTGTGCCCTATGATGTCACCCACCCTCCTGGACAGACACCTCAG  916

seq1  CCTCATGCTTTTCTGGAACAATAGCAGGAGTCAGAGAACTCTAACACTCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGCTTTTCTGGAACAATAGCAGGAGTCAGAGAACTCTAACACTCC  966

seq1  CCAGGGCCCAAAAAATAAACCCAGCAAATACTTCTGTACTGGGTACAATT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCCCAAAAAATAAACCCAGCAAATACTTCTGTACTGGGTACAATT  1016

seq1  TAAGTCCCCATCAAAAGCACCGAATATCTCCCAAGAACCAATACTGCCCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCCCCATCAAAAGCACCGAATATCTCCCAAGAACCAATACTGCCCT  1066

seq1  TTCAAAGTGTCAGCAGATCAATTATTTTTAATTAAAATGACATTTTAATT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGTGTCAGCAGATCAATTATTTTTAATTAAAATGACATTTTAATT  1116

seq1  TCTATTTTTTTATATATAAAAGAAGTAAGCATTTGGTCTTAGTAAGTTCT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTTTTATATATAAAAGAAGTAAGCATTTGGTCTTAGTAAGTTCT  1166

seq1  TGGATGAGAATGAATTC  1212
      |||||||||||||||||
seq2  TGGATGAGAATGAATTC  1183

seq1: chr3_126594456_126595465
seq2: B6Ng01-119B15.g_172_1166

seq1  GTGTGTCAATTGATGCAAGCTAGAGTCATCAGAGAGGAAGGAACCTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCAATTGATGCAAGCTAGAGTCATCAGAGAGGAAGGAACCTCAGT  50

seq1  TAAGAAAATGCCTCCATGAAATCTAGCTTTAAAGCCTTTTCTCAATTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAATGCCTCCATGAAATCTAGCTTTAAAGCCTTTTCTCAATTCAT  100

seq1  GATCAGTGGGAGAGAGCCCAGCACATGGCAAGTGGTGCCTTCCTTGGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTGGGAGAGAGCCCAGCACATGGCAAGTGGTGCCTTCCTTGGGGT  150

seq1  AGTAGTCCTAGGCTCTATAAGAAAGTAAGCTGAGCAAGCCATGTGAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCCTAGGCTCTATAAGAAAGTAAGCTGAGCAAGCCATGTGAAGCA  200

seq1  AGCCAGTAAGCAACACCCCTCCATGGCCTCTTCCTAAGCTCTTGCCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTAAGCAACACCCCTCCATGGCCTCTTCCTAAGCTCTTGCCTCCA  250

seq1  GGATCTAGCCTTGTTTGTGTTTCTGTTCTGACTTCCTTCAGTGATTAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTAGCCTTGTTTGTGTTTCTGTTCTGACTTCCTTCAGTGATTAACA  300

seq1  GAAATGTGCAAGTATAAACCAACAAACCCTTTCCTTCCCAACTTGCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGCAAGTATAAACCAACAAACCCTTTCCTTCCCAACTTGCTTTT  350

seq1  TGCTCATAGTGTTTAGCCACAGCAATAGAAACCCTAAGACAATGACCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATAGTGTTTAGCCACAGCAATAGAAACCCTAAGACAATGACCATT  400

seq1  CTTGTATGGTCTGCTAGGCTTCTACCATGACCTTCCATGCCTGTTACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATGGTCTGCTAGGCTTCTACCATGACCTTCCATGCCTGTTACTGA  450

seq1  CCCACAGGCTCTATTCATATCATATCCATACTCTCTAGAAAGCAAGATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGGCTCTATTCATATCATATCCATACTCTCTAGAAAGCAAGATCC  500

seq1  TGAACATCTTTTTCTAGGATCTGCCTCAGTGAGTCTGCCTGATCTTACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATCTTTTTCTAGGATCTGCCTCAGTGAGTCTGCCTGATCTTACCC  550

seq1  TCCACGTATCCACCAAAAGCCCCAAATATCCTCAAACTCCAGACTTTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGTATCCACCAAAAGCCCCAAATATCCTCAAACTCCAGACTTTGAC  600

seq1  CAAAATGCATATTGTTCACATCACCCTAGTCCCCTATATCTACCTGACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGCATATTGTTCACATCACCCTAGTCCCCTATATCTACCTGACTT  650

seq1  TATCCCATTTAAGCCATATCCATCCCTAGGCCCAACTTGACCCACAATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCATTTAAGCCATATCCATCCCTAGGCCCAACTTGACCCACAATCC  700

seq1  TCTCTTCTGGCCTATCCTGTTCTGTCCATATCTGATACAAAACTAACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTGGCCTATCCTGTTCTGTCCATATCTGATACAAAACTAACAAA  750

seq1  ACAAGTCTACATGTCATGATTTAATCATAAAATTCAAACAACATGAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCTACATGTCATGATTTAATCATAAAATTCAAACAACATGAGAGA  800

seq1  TTAAGCAAGGATCCAAGTCCTATCAGTCTTGTAAAAAATACTTGCCAATA  850
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TT-AGCAAGGATCCCAGTCCTATCAGTCTTGTAAAAAATACTTGCCAATA  849

seq1  AAGATTATCTGGATAAAAGAATAATATATAATAAACAAAGAATTAATGGA  900
      |||||||||| ||| |||||   ||||||||||||||||| ||||   ||
seq2  AAGATTATCT-GAT-AAAGA--TATATATAATAAACAAAG-ATTA--TGA  892

seq1  ATTTAAAGAAATTACAAAGGAACAGCTAAATGAACTTAGAAATAACTTAA  950
      ||||||   ||||||||||||||||||||||||   ||||||| ||||||
seq2  ATTTAA--GAATTACAAAGGAACAGCTAAATGA--CTAGAAAT-ACTTAA  937

seq1  AGAGAATAAACGCCCAAGTAATACCCAAGAAAACACAAACATAAGACT-G  999
       |||||| |||||||| || ||||||| |||||||||||| ||||||| |
seq2  GGAGAAT-AACGCCCAGGT-ATACCCAGGAAAACACAAAC-TAAGACTGG  984

seq1  ATAACAATAAA  1010
      |||||||||||
seq2  ATAACAATAAA  995