BAC Information

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BAC

Clone NameB6Ng01-119C02
Chromosome3 (Build37)
Map Location 119,916,536 - 120,061,718
singlet/doubletdoublet
Overlap genenone
Upstream geneDpyd, LOC100043275, LOC100043278, Ptbp2
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119C02.bB6Ng01-119C02.g
ACCDH923425DH923426
length9991,141
definitionDH923425|Mus musculus domesticus DNA, BAC clone: B6Ng01-119C02, 5' end.DH923426|Mus musculus domesticus DNA, BAC clone: B6Ng01-119C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,061,081 - 120,061,718)(119,916,536 - 119,917,711)
sequence
gaattcattatttccaattctctagcttctcctatggcacactttaaaaa
aaaaaaaaaacaacttgtcatttgtcttcacttttgcaaatatgagctgc
aactgatagctttctgtttctgttctgttctgttctcccttgtttgtttg
tttgtttttgtttgttttgtttttttttctttcctgtggtcactctcttg
taattctctttatttgtaataaaacatgtttccccctgagtcttcagtgt
cgttcttcatgcttctctctgtggtttgttaattgtgactgctcaccagg
gctacattcacttcctgcatgtaattatcactatttgataactagagtct
gtcaaaccttgatacctttctagtctgtgttctcccattcttgagctact
tcctcaattcaacatactcctgtctgtatgccataagtgtcaatatgtca
tatgtcagtatgtcagtcataagtgtcctctgagaagctcctcccagcag
cagattaaaacagatagccaaacattagatggccttgggaagtcttgtgc
aagggctgggggaaggattaagagacccagaggagtcagggattccacaa
gaagaccaacagtcaaataacatggacccttggaggttcccagaaactga
accaccaaccaaagaccatacatgggctggacctaggtcccttgcacata
tgtagcagatatgcaggttggtgtttatgtgtatctcccaataactaaag
taaggtcttaccttgactatgttgcctgcttgtggatcttgttctcctaa
ctggactgtcttgtctggcctcagagggagaggatgtacctagttcttca
gtgacatgaggggcagagtaggttgtttccccggaggcagggggaaaacc
tctcacttctcagaggtgaagggaaatggggagtgggaggagccatgagg
gcatctgggaggagaggggtctgtgtcaggatgtaagtgatgaataatg
gaattctataatttagtgttctgcttataataatccaaccttcccccagt
gaaccctatctccagagacaagacctctattctggagcctttctatatta
gataagaggaggtttcaacctctcctaagcatccagcactccatgctttc
agaattttgtcccagcataaaatgatggttgatattcacaggcaacagaa
atgcaactccccattcatcgctatcacgactgctatttctcgtgccccaa
aagcactttgcggactataaaatcttaaacaaatgtgcatacacattatc
actatctcaaattatctggggccaagagacaccgatgctgggtaatcaaa
tttcattgaagtggatgtaaaatgtgagtcgagtaaaagaatgtgttagt
gtgttcagggacacttaggaatttgggtgatatgtcataaaatttcaagt
tctaacttgggagttgaaatgggcctagaataaaataagaggagggaagg
tgaaggagaaaaggatagtttacattttgattattgcatgactaagaatt
cagttgggataaacgagagtaaaattgtaaactgtagacagactaatgaa
gaaaaaaaaaaggacgtatggattcatgtattttgcccttggcagaaaga
tctttcttcaaaagaaaaaaataacaaggcagagcaagaactctagaaga
aaggtgggctggaatcatagatgcctccctgatataaaaggggtgcagtg
atttcctgtatcttgtggaaatagtagctatggagctgttgtggccagcc
cctgacctccgggcatgtcaacgatgtaagaatgaaagggctctagatga
acttccttccgtttctccctcaaggggctggtgttaacagtgcagttcag
atgacctttcccatctgagagtggagaaagtcaagggcttaggagtaaac
gtactgatgcattcttgcgtgtgtgtatatgatctcctcgaggaagattg
aagaagatgcagagcagtatatatctgaaatgtgcacataagaaatgatc
accaaatgcagaaaagactctgcgatgagacgcttgaatctattttcctc
tgacgttagtctgagaatcaaggatctagcctaagcctcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_120061081_120061718
seq2: B6Ng01-119C02.b_44_681 (reverse)

seq1  AACCTCCAAGGGTCCATGTTATTTGACTGTTGGTCTTCTTGTGGAATCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCAAGGGTCCATGTTATTTGACTGTTGGTCTTCTTGTGGAATCCC  50

seq1  TGACTCCTCTGGGTCTCTTAATCCTTCCCCCAGCCCTTGCACAAGACTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCTCTGGGTCTCTTAATCCTTCCCCCAGCCCTTGCACAAGACTTC  100

seq1  CCAAGGCCATCTAATGTTTGGCTATCTGTTTTAATCTGCTGCTGGGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCCATCTAATGTTTGGCTATCTGTTTTAATCTGCTGCTGGGAGGA  150

seq1  GCTTCTCAGAGGACACTTATGACTGACATACTGACATATGACATATTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCAGAGGACACTTATGACTGACATACTGACATATGACATATTGAC  200

seq1  ACTTATGGCATACAGACAGGAGTATGTTGAATTGAGGAAGTAGCTCAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGGCATACAGACAGGAGTATGTTGAATTGAGGAAGTAGCTCAAGA  250

seq1  ATGGGAGAACACAGACTAGAAAGGTATCAAGGTTTGACAGACTCTAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGAACACAGACTAGAAAGGTATCAAGGTTTGACAGACTCTAGTTA  300

seq1  TCAAATAGTGATAATTACATGCAGGAAGTGAATGTAGCCCTGGTGAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGTGATAATTACATGCAGGAAGTGAATGTAGCCCTGGTGAGCAG  350

seq1  TCACAATTAACAAACCACAGAGAGAAGCATGAAGAACGACACTGAAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATTAACAAACCACAGAGAGAAGCATGAAGAACGACACTGAAGACT  400

seq1  CAGGGGGAAACATGTTTTATTACAAATAAAGAGAATTACAAGAGAGTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGGAAACATGTTTTATTACAAATAAAGAGAATTACAAGAGAGTGAC  450

seq1  CACAGGAAAGAAAAAAAAACAAAACAAACAAAAACAAACAAACAAACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAAAGAAAAAAAAACAAAACAAACAAAAACAAACAAACAAACAAG  500

seq1  GGAGAACAGAACAGAACAGAAACAGAAAGCTATCAGTTGCAGCTCATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACAGAACAGAACAGAAACAGAAAGCTATCAGTTGCAGCTCATATT  550

seq1  TGCAAAAGTGAAGACAAATGACAAGTTGTTTTTTTTTTTTTTTAAAGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAGTGAAGACAAATGACAAGTTGTTTTTTTTTTTTTTTAAAGTGT  600

seq1  GCCATAGGAGAAGCTAGAGAATTGGAAATAATGAATTC  638
      ||||||||||||||||||||||||||||||||||||||
seq2  GCCATAGGAGAAGCTAGAGAATTGGAAATAATGAATTC  638

seq1: chr3_119916536_119917711
seq2: B6Ng01-119C02.g_67_1207

seq1  GAATTCTATAATTTAGTGTTCTGCTTATAATAATCCAACCTTCCCCCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAATTTAGTGTTCTGCTTATAATAATCCAACCTTCCCCCAGT  50

seq1  GAACCCTATCTCCAGAGACAAGACCTCTATTCTGGAGCCTTTCTATATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTATCTCCAGAGACAAGACCTCTATTCTGGAGCCTTTCTATATTA  100

seq1  GATAAGAGGAGGTTTCAACCTCTCCTAAGCATCCAGCACTCCATGCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGAGGAGGTTTCAACCTCTCCTAAGCATCCAGCACTCCATGCTTTC  150

seq1  AGAATTTTGTCCCAGCATAAAATGATGGTTGATATTCACAGGCAACAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTGTCCCAGCATAAAATGATGGTTGATATTCACAGGCAACAGAA  200

seq1  ATGCAACTCCCCATTCATCGCTATCACGACTGCTATTTCTCGTGCCCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACTCCCCATTCATCGCTATCACGACTGCTATTTCTCGTGCCCCAA  250

seq1  AAGCACTTTGCGGACTATAAAATCTTAAACAAATGTGCATACACATTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTTGCGGACTATAAAATCTTAAACAAATGTGCATACACATTATC  300

seq1  ACTATCTCAAATTATCTGGGGCCAAGAGACACCGATGCTGGGTAATCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTCAAATTATCTGGGGCCAAGAGACACCGATGCTGGGTAATCAAA  350

seq1  TTTCATTGAAGTGGATGTAAAATGTGAGTCGAGTAAAAGAATGTGTTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGAAGTGGATGTAAAATGTGAGTCGAGTAAAAGAATGTGTTAGT  400

seq1  GTGTTCAGGGACACTTAGGAATTTGGGTGATATGTCATAAAATTTCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAGGGACACTTAGGAATTTGGGTGATATGTCATAAAATTTCAAGT  450

seq1  TCTAACTTGGGAGTTGAAATGGGCCTAGAATAAAATAAGAGGAGGGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTTGGGAGTTGAAATGGGCCTAGAATAAAATAAGAGGAGGGAAGG  500

seq1  TGAAGGAGAAAAGGATAGTTTACATTTTGATTATTGCATGACTAAGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAGAAAAGGATAGTTTACATTTTGATTATTGCATGACTAAGAATT  550

seq1  CAGTTGGGATAAACGAGAGTAAAATTGTAAACTGTAGACAGACTAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGGATAAACGAGAGTAAAATTGTAAACTGTAGACAGACTAATGAA  600

seq1  GAAAAAAAAAAGGACGTATGGATTCATGTATTTTGCCCTTGGCAGAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAAGGACGTATGGATTCATGTATTTTGCCCTTGGCAGAAAGA  650

seq1  TCTTTCTTCAAAAGAAAAAAATAACAAGGCAGAGCAAGAACTCTAGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTCAAAAGAAAAAAATAACAAGGCAGAGCAAGAACTCTAGAAGA  700

seq1  AAGGTGGGCTGGAATCATAGATGCCTCCCTGATATAAAAGGGGTGCAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGGCTGGAATCATAGATGCCTCCCTGATATAAAAGGGGTGCAGTG  750

seq1  ATTTCCTGTATCTTGTGGAAATAGTAGCTATGGAGCTGTTGTGGCCAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTGTATCTTGTGGAAATAGTAGCTATGGAGCTGTTGTGGCCAGCC  800

seq1  CCTGACCTCCGGGCATGTCAACGATGTAAGAATG-AAGGGCTCTAGATGA  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCTGACCTCCGGGCATGTCAACGATGTAAGAATGAAAGGGCTCTAGATGA  850

seq1  ACTTCCTTCCGTTTCTCCCTCAAAGGGGCTGGTGTTAACAGTGCAGTTCA  899
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACTTCCTTCCGTTTCTCCCTC-AAGGGGCTGGTGTTAACAGTGCAGTTCA  899

seq1  GATGACCTTTCCCATCTGAGAGTGGAGAAAGTCAAGGGCTTAGGGAGTAA  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GATGACCTTTCCCATCTGAGAGTGGAGAAAGTCAAGGGCTTA-GGAGTAA  948

seq1  ACGTACTGAATGCATTCTTGCGTGTGTGTATATGAATTCTCCCTTCAGAG  999
      |||||||| ||||||||||||||||||||||||||  |||||  || |||
seq2  ACGTACTG-ATGCATTCTTGCGTGTGTGTATATGA--TCTCC--TC-GAG  992

seq1  GAAAGATTTGAAAGAAAGATGCAGAGCAGTATATAAATCTGAAAATGTGC  1049
      | |||| |||||   |||||||||||||||||||  ||||| ||||||||
seq2  G-AAGA-TTGAA--GAAGATGCAGAGCAGTATAT--ATCTG-AAATGTGC  1035

seq1  ACCATAAGAAAATGAATCACCAAAATGGCAAGAAAAGACATCTGCAGATG  1099
      | |||||| ||||| |||||| |||||   ||||||||| ||||| ||||
seq2  A-CATAAG-AAATG-ATCACC-AAATG--CAGAAAAGAC-TCTGC-GATG  1077

seq1  AGACGCTGGAATCTATTTTTCCTCTGGACAGTAGTCTGAGAAAAAAAAAA  1149
      ||||||| ||||||| ||||||||| |||  |||||||||||  ||  | 
seq2  AGACGCTTGAATCTA-TTTTCCTCT-GACGTTAGTCTGAGAATCAAGGA-  1124

seq1  AAAAAGAATTCTAAGCCTAAGCCTCAG  1176
               ||| ||||||||||||||
seq2  ---------TCT-AGCCTAAGCCTCAG  1141