BAC Information

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BAC

Clone NameB6Ng01-120L20
Chromosome3 (Build37)
Map Location 145,297,869 - 145,298,995
singlet/doubletsinglet
Overlap genenone
Upstream geneSh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik
Downstream geneCyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120L20.bB6Ng01-120L20.g
ACCDH924605DH924606
length1,2251,117
definitionDH924605|Mus musculus domesticus DNA, BAC clone: B6Ng01-120L20, 5' end.DH924606|Mus musculus domesticus DNA, BAC clone: B6Ng01-120L20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaaggaatgaacaggcaaggtgctagagacacggtcaagggaac
agtagtaggtaaatcgcctcagtgccactgaggtagctctagcggctgtg
acaatgacaagcgagtcaccccgagtggcagggcgagctgactgaagtgt
gcctcttggtctctcaggctaacactggcattccttcctctgcagctctt
tctccaaacagcatcaaagatctgtcttttattttattgttccatcacgt
cagcacacgtcccaggtctctgtgctcaccttcctcaggaggaaggacat
agggtgacatgtgtgacaggtatgttgggccaggcctgaaagggaaggat
gcacagtcttctggccacattcctctggctaactttcacccaaatttctt
taatttaattttttttttttacttattcactttacatctcacttattgcc
ccctcccagtcacccctctgacaatccttcccccatgacccctcctcttc
ttctctgagtgggtagggaacccccctgggtacaccccccacgctggcac
atcatgaggctagacacccccacgctggcacatcaactctcttccaggct
agatgcttcaggagagccccctgaggccagacaaggcagcccagttagac
gtacatatttcatatacaggcaactgtttttaggatagcccccattccac
tgtttgggacctgcatgaacaccaagctgcacatttgctacataagagca
gggaagccaaggtccagcctgtgtatgctctttggttggtggttcagtct
ctgagagtcccaagggtccaggttagttgactctgttggccttcctatgg
agcccctatctcctttggggcctgcaatcctccctcctattcttccttaa
gagtctccacgttccatccactgtttggctgaagatctctgtatctgtct
gagtcagctgctgggtggagtctctcagaggacaacttgctcctttctgc
agcatacagagtatcattaacagtgttaagatggtgctggcatccctcag
tctctgcctccttcacccgtgctgcatttttgtgactggaaaattgggtg
gaagttatggtggtgggctatggtcccatggttcactgggagtgcctggc
taaggagtggccaatcgttcattccatgatgagtcaagctaggtcctact
ctgaatctgatgatcgcctcacatc
gaattctcccgatgcttttgaaaagggagtcattacatgtttgaactaaa
agtgtggaccttgggggcaactggaaaggcttaggaggtgggacgaaggt
tttttgctcttcgctagctgtgaggcacagagaaggttatgaggtcctaa
gaaccccactttccctgcttgtgagctggaaatgatgggttgtgcatgaa
tcataaaccataaacatgtaaacaaggagataccagcagctgtatcttcg
ttaccacgccaccatcaccatcactcctaccaacatcactgggattgccc
atctccaaaaaaaccgttgaattgtataaagacacaattgcctttcctct
ggaatatataacagtgagatgtagtaagaatgaaccagtagtccaggcct
attatcccagctactacagagtctgaggctggaagattgcctcacatggc
ctgcctaggctagagtgaattctaagctggcctaggcaccgtactgacgc
tcagtctaaaggtgaaaactgggagctggagagatcgttcggtgcttagg
agcctattctgccctcccaaaggactggagttcagttcttagcaccaata
ttagacagcttgccattgtctgagactccagatctagggggtctgactcc
tctcgcctctgtaggtaccaaaactcacatgcacagaccagtccccatgc
tacacacacattattagaaaaaaaatccttaaaattaaaaaatgggggga
aaggcttaggcttaaggatatatagctgagtggtagagtccttgtctagt
ccttccggaggatctaggtttaatcccagtgccatcaattaataaatcaa
ttaacaataaatagaggaagaggagaaccctatgggcccaatgaacacct
ctccaagtgactttgacaagttccctcctgtatctcttggttttgaagct
gactggttttgctccttgagcactagttagtgtaaggcaatcagtgctta
gtaggactctgtaccaagcgtgtcctgttgagcgctcctacttagagcag
gttctgccatgaagaagcttagttaggctaggcttgggcatggtgatatt
ggccctaataccagtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_145297869_145298995
seq2: B6Ng01-120L20.g_69_1185

seq1  GAATTCTCCCGATGCTTTTGAAAAGGGAGTCATTACATGTTTGAACTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCGATGCTTTTGAAAAGGGAGTCATTACATGTTTGAACTAAA  50

seq1  AGTGTGGACCTTGGGGGCAACTGGAAAGGCTTAGGAGGTGGGACGAAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGACCTTGGGGGCAACTGGAAAGGCTTAGGAGGTGGGACGAAGGT  100

seq1  TTTTTGCTCTTCGCTAGCTGTGAGGCACAGAGAAGGTTATGAGGTCCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTCTTCGCTAGCTGTGAGGCACAGAGAAGGTTATGAGGTCCTAA  150

seq1  GAACCCCACTTTCCCTGCTTGTGAGCTGGAAATGATGGGTTGTGCATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCCACTTTCCCTGCTTGTGAGCTGGAAATGATGGGTTGTGCATGAA  200

seq1  TCATAAACCATAAACATGTAAACAAGGAGATACCAGCAGCTGTATCTTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAACCATAAACATGTAAACAAGGAGATACCAGCAGCTGTATCTTCG  250

seq1  TTACCACGCCACCATCACCATCACTCCTACCAACATCACTGGGATTGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACGCCACCATCACCATCACTCCTACCAACATCACTGGGATTGCCC  300

seq1  ATCTCCAAAAAAACCGTTGAATTGTATAAAGACACAATTGCCTTTCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAAAAAAACCGTTGAATTGTATAAAGACACAATTGCCTTTCCTCT  350

seq1  GGAATATATAACAGTGAGATGTAGTAAGAATGAACCAGTAGTCCAGGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATATAACAGTGAGATGTAGTAAGAATGAACCAGTAGTCCAGGCCT  400

seq1  ATTATCCCAGCTACTACAGAGTCTGAGGCTGGAAGATTGCCTCACATGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCCAGCTACTACAGAGTCTGAGGCTGGAAGATTGCCTCACATGGC  450

seq1  CTGCCTAGGCTAGAGTGAATTCTAAGCTGGCCTAGGCACCGTACTGACGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTAGGCTAGAGTGAATTCTAAGCTGGCCTAGGCACCGTACTGACGC  500

seq1  TCAGTCTAAAGGTGAAAACTGGGAGCTGGAGAGATCGTTCGGTGCTTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTAAAGGTGAAAACTGGGAGCTGGAGAGATCGTTCGGTGCTTAGG  550

seq1  AGCCTATTCTGCCCTCCCAAAGGACTGGAGTTCAGTTCTTAGCACCAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTATTCTGCCCTCCCAAAGGACTGGAGTTCAGTTCTTAGCACCAATA  600

seq1  TTAGACAGCTTGCCATTGTCTGAGACTCCAGATCTAGGGGGTCTGACTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAGCTTGCCATTGTCTGAGACTCCAGATCTAGGGGGTCTGACTCC  650

seq1  TCTCGCCTCTGTAGGTACCAAAACTCACATGCACAGACCAGTCCCCATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCCTCTGTAGGTACCAAAACTCACATGCACAGACCAGTCCCCATGC  700

seq1  TACACACACATTATTAGAAAAAAAATCCTTAAAATTAAAAAATGGGGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACATTATTAGAAAAAAAATCCTTAAAATTAAAAAATGGGGGGA  750

seq1  AAGGCTTAGGCTTAAGGATATATAGCTGAGTGGTAGAGTCCTTGTCTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTAGGCTTAAGGATATATAGCTGAGTGGTAGAGTCCTTGTCTAGT  800

seq1  CCTTCCGGAGGATCTAGGTTTAATCCCAGTGCCAATCAATTAATAAATCA  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCTTCCGGAGGATCTAGGTTTAATCCCAGTGCC-ATCAATTAATAAATCA  849

seq1  ATTAACAATAAATAGAGGAAGAGGAGAACCCTATGGGCACAATGAACAAC  900
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  ATTAACAATAAATAGAGGAAGAGGAGAACCCTATGGGCCCAATGAAC-AC  898

seq1  CTCTCCAAGTGACTTTGACAAGTTCCCTCCTGTATCTCTTGGTTTTGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAAGTGACTTTGACAAGTTCCCTCCTGTATCTCTTGGTTTTGAAG  948

seq1  CTGACTGGTTTTGCTCCTTGAGGCACTAGTAAGTGTAAGGCAATCAGTGC  1000
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  CTGACTGGTTTTGCTCCTTGA-GCACTAGTTAGTGTAAGGCAATCAGTGC  997

seq1  TTAGTAGGACTCCTGTACCAGGCGTTGTCCTGTTTGAGCGCTCTACCTTA  1050
      ||||||||||| |||||||| ||| ||||||| ||||||||||   ||||
seq2  TTAGTAGGACT-CTGTACCAAGCG-TGTCCTG-TTGAGCGCTCCTACTTA  1044

seq1  GAAGCCAGTTCTCTGCCATGAAGAAGCTTAGTTTAGGCTAGGC-TGGGCA  1099
      ||   ||| | |||||||||||||||||||| ||||||||||| ||||||
seq2  GA--GCAGGT-TCTGCCATGAAGAAGCTTAG-TTAGGCTAGGCTTGGGCA  1090

seq1  TGGTGATATTGGCCTTTAATCCCAGTAC  1127
      ||||||||||||||  |||| |||||||
seq2  TGGTGATATTGGCC-CTAATACCAGTAC  1117